mRNA_P-wetherbeei_contig56113.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56113.1.1
Unique NamemRNA_P-wetherbeei_contig56113.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56113.1.1 vs. uniprot
Match: A0A3N5KN34_9ACTN (Peroxidase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3N5KN34_9ACTN)

HSP 1 Score: 139 bits (351), Expect = 2.140e-39
Identity = 74/129 (57.36%), Postives = 90/129 (69.77%), Query Frame = 1
Query:    4 HMMAGLAVVLRPELGLSRRQQEMIASVVSVKNSCFY*TESHIEFLRRASLDEKLAAELRRDHTPADLSAADRAVLDFTVKLTTAAYKITPADLARLREVGFDDVAILQITIIAAWFNYINRVADALGVG 390
            H  A    ++ P+L L RRQ EMIA+VVS  N  +Y T SH EFLRRA+ D+ LA  +RRD   A +S ADRA+L++  ++T  A  +T    ARLR  GFDD AILQIT+IAAWFNYINRVADALGVG
Sbjct:   58 HAFATFGALMSPDLPLDRRQHEMIATVVSTTNRTYYCTLSHTEFLRRATSDDDLAEAIRRDFRTAPISDADRAMLEYVEQITLDATCVTDGHHARLRAAGFDDQAILQITLIAAWFNYINRVADALGVG 186          
BLAST of mRNA_P-wetherbeei_contig56113.1.1 vs. uniprot
Match: A0A142YGB9_9PLAN (Carboxymuconolactone decarboxylase family protein n=1 Tax=Planctomyces sp. SH-PL62 TaxID=1636152 RepID=A0A142YGB9_9PLAN)

HSP 1 Score: 133 bits (334), Expect = 8.430e-37
Identity = 71/130 (54.62%), Postives = 90/130 (69.23%), Query Frame = 1
Query:    4 HMMAGLAVVLRPELGLSRRQQEMIASVVSVKNSCFY*TESHIEFLRRASLDEKLAAELRRDHTPADLSAADRAVLDFTVKLTTAAYKITPADLARLREVGFDDVAILQITIIAAWFNYINRVADALGVGR 393
            H  A    ++  +L LSRR  EMIA +VSV N C Y + SH EFLRR  LD++L   L+ D+  A ++ A+RA+LD+ V++T  A +ITPA   RLR VGFDD  ILQIT+IA+WFN INR ADALGVGR
Sbjct:   60 HAFATFGSLMAADLPLSRRDHEMIALMVSVTNRCRYCSASHAEFLRRVVLDDELVRRLQEDYANAAITEAERAMLDYAVQVTRDATRITPAWHDRLRAVGFDDRGILQITLIASWFNSINRTADALGVGR 189          
BLAST of mRNA_P-wetherbeei_contig56113.1.1 vs. uniprot
Match: UPI0013EC49D0 (peroxidase-related enzyme n=1 Tax=Paludisphaera soli TaxID=2712865 RepID=UPI0013EC49D0)

HSP 1 Score: 132 bits (333), Expect = 1.130e-36
Identity = 71/130 (54.62%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    4 HMMAGLAVVLRPELGLSRRQQEMIASVVSVKNSCFY*TESHIEFLRRASLDEKLAAELRRDHTPADLSAADRAVLDFTVKLTTAAYKITPADLARLREVGFDDVAILQITIIAAWFNYINRVADALGVGR 393
            H  A    ++ P+L L RR  EMIA +VS+ N C Y + SH EFL R  LDE LA  L  D+  A LS A+RA+LD+ V++T  A +++PA   RLR VGFDD  ILQIT+IA+WFN INR ADALGVGR
Sbjct:   58 HAFATFGSLMAPDLPLRRRDHEMIALMVSLTNRCRYCSASHREFLNRVELDESLARALAEDYANAPLSEAERAMLDYAVQITRDATRLSPAWHDRLRAVGFDDRGILQITLIASWFNAINRTADALGVGR 187          
BLAST of mRNA_P-wetherbeei_contig56113.1.1 vs. uniprot
Match: UPI0019B71FEA (Peroxidase-related enzyme n=1 Tax=Chthonomonadaceae bacterium TaxID=2739509 RepID=UPI0019B71FEA)

HSP 1 Score: 132 bits (331), Expect = 2.330e-36
Identity = 67/131 (51.15%), Postives = 93/131 (70.99%), Query Frame = 1
Query:    1 RHMMAGLAVVLRPELGLSRRQQEMIASVVSVKNSCFY*TESHIEFLRRASLDEKLAAELRRDHTPADLSAADRAVLDFTVKLTTAAYKITPADLARLREVGFDDVAILQITIIAAWFNYINRVADALGVGR 393
            +H  A     + P+L L+RRQ E+IA+ VS  N  FY + +H EFLRRA+ D+ L   ++ D+  A LS A+R ++++ +++T  A +I+    ARL EVGFDDVAILQIT+IA+WFNYINR+ADALGVGR
Sbjct:   58 KHAFATFGACMSPDLPLNRRQHELIATAVSQANCTFYCSTAHREFLRRATHDDALVEAMKTDYRTAPLSEAERVMVEYAMQITQDATQISRETHARLHEVGFDDVAILQITMIASWFNYINRMADALGVGR 188          
BLAST of mRNA_P-wetherbeei_contig56113.1.1 vs. uniprot
Match: A0A7C4ZHQ6_9BACT (Peroxidase n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A7C4ZHQ6_9BACT)

HSP 1 Score: 123 bits (309), Expect = 4.290e-34
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 1
Query:  118 ESHIEFLRRASLDEKLAAELRRDHTPADLSAADRAVLDFTVKLTTAAYKITPADLARLREVGFDDVAILQITIIAAWFNYINRVADALGVGR 393
            ESH EFLRR +LDE LAA ++RD+T ADL+  DR +LD+  +LT  A  I PADL RLREVGF+D AILQI +IA+WFNYINRVAD LGVGR
Sbjct:    2 ESHAEFLRRVTLDEDLAAAIKRDYTSADLNERDRRMLDYVHQLTVDASLIVPADLDRLREVGFNDQAILQINLIASWFNYINRVADGLGVGR 93          
BLAST of mRNA_P-wetherbeei_contig56113.1.1 vs. uniprot
Match: A0A2W4RGW5_9BACT (Alkylhydroperoxidase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2W4RGW5_9BACT)

HSP 1 Score: 125 bits (315), Expect = 6.800e-34
Identity = 68/130 (52.31%), Postives = 84/130 (64.62%), Query Frame = 1
Query:    4 HMMAGLAVVLRPELGLSRRQQEMIASVVSVKNSCFY*TESHIEFLRRASLDEKLAAELRRDHTPADLSAADRAVLDFTVKLTTAAYKITPADLARLREVGFDDVAILQITIIAAWFNYINRVADALGVGR 393
            H  A   V++ P+L L+RRQ EMIA+VVS  N   Y + SH EFL R + D   A  + RD   A +   DRA+L++  ++T  A  +T A   RLRE GFDD  ILQIT+IAAWFNYINRVADALGVG 
Sbjct:   58 HAFATFGVLMSPDLPLTRRQHEMIATVVSAANRTRYCSLSHTEFLTRVTGDRPFAEAVARDFRTAPIDDRDRAMLEYVEQITRDATGVTDAHHVRLREAGFDDRGILQITLIAAWFNYINRVADALGVGH 187          
BLAST of mRNA_P-wetherbeei_contig56113.1.1 vs. uniprot
Match: A0A7C2P2F2_9PLAN (CMD domain-containing protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C2P2F2_9PLAN)

HSP 1 Score: 125 bits (313), Expect = 1.220e-33
Identity = 69/130 (53.08%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    4 HMMAGLAVVLRPELGLSRRQQEMIASVVSVKNSCFY*TESHIEFLRRASLDEKLAAELRRDHTPADLSAADRAVLDFTVKLTTAAYKITPADLARLREVGFDDVAILQITIIAAWFNYINRVADALGVGR 393
            H       ++ P L LSRRQ E+IA+VVS  N   Y + SH EFLRRA+ D  L   +++D+  A L+ A+RA+ D+  +LT  A K+  +D+ RLR VGFDD  ILQIT+IAAWFN INRVADALGVGR
Sbjct:   59 HHFTTFGSLMDPALPLSRRQHELIATVVSQANCTRYCSVSHREFLRRATGDAALVDAVQKDYRTAPLTDAERAMCDYADQLTRDATKLQRSDIERLRSVGFDDRGILQITLIAAWFNSINRVADALGVGR 188          
BLAST of mRNA_P-wetherbeei_contig56113.1.1 vs. uniprot
Match: A0A538RXR9_9BACT (Peroxidase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A538RXR9_9BACT)

HSP 1 Score: 121 bits (304), Expect = 2.130e-33
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 1
Query:  118 ESHIEFLRRASLDEKLAAELRRDHTPADLSAADRAVLDFTVKLTTAAYKITPADLARLREVGFDDVAILQITIIAAWFNYINRVADALGVGRPD 399
            ESH EFLR  +LDE+LAA LRRD+  A+LSA DRA+LD+  KLT    K+   DL RLR+VGFDD  ILQI +IA+WFNYINRVAD LGVGR +
Sbjct:    2 ESHAEFLRVVTLDEELAAALRRDYRQANLSAPDRAMLDYVAKLTQCPAKVCREDLERLRQVGFDDRGILQINLIASWFNYINRVADGLGVGRAE 95          
BLAST of mRNA_P-wetherbeei_contig56113.1.1 vs. uniprot
Match: A0A6M5YF57_9BACT (Uncharacterized protein n=1 Tax=Frigoriglobus tundricola TaxID=2774151 RepID=A0A6M5YF57_9BACT)

HSP 1 Score: 119 bits (299), Expect = 8.620e-33
Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = 1
Query:  136 LRRASLDEKLAAELRRDHTPADLSAADRAVLDFTVKLTTAAYKITPADLARLREVGFDDVAILQITIIAAWFNYINRVADALGVGRPD 399
            +RRA LD +LAA+L RD+T ADL+ ADRA+LDF VKLT   YK T  D+ +LR  GFDD  +LQIT+IAA+FNYINRVADALGVG+P+
Sbjct:    1 MRRAGLDAELAAQLERDYTKADLAPADRAMLDFAVKLTRTPYKHTREDVEKLRAAGFDDTGVLQITVIAAFFNYINRVADALGVGKPE 88          
BLAST of mRNA_P-wetherbeei_contig56113.1.1 vs. uniprot
Match: A0A354GQP7_9BACT (Peroxidase n=1 Tax=Planctomycetales bacterium TaxID=2053591 RepID=A0A354GQP7_9BACT)

HSP 1 Score: 117 bits (294), Expect = 4.300e-32
Identity = 60/82 (73.17%), Postives = 67/82 (81.71%), Query Frame = 1
Query:  148 SLDEKLAAELRRDHTPADLSAADRAVLDFTVKLTTAAYKITPADLARLREVGFDDVAILQITIIAAWFNYINRVADALGVGR 393
            SLD +LAA LRRD+  ADL+  DRA+LDFT KLT  AYK TP DL +LR VGFDD AILQIT++AAWFNYINRVAD LGVGR
Sbjct:    2 SLDAELAAALRRDYREADLTPQDRAMLDFTAKLTKEAYKTTPDDLEQLRIVGFDDRAILQITMLAAWFNYINRVADVLGVGR 83          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56113.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3N5KN34_9ACTN2.140e-3957.36Peroxidase n=1 Tax=Actinomycetia bacterium TaxID=1... [more]
A0A142YGB9_9PLAN8.430e-3754.62Carboxymuconolactone decarboxylase family protein ... [more]
UPI0013EC49D01.130e-3654.62peroxidase-related enzyme n=1 Tax=Paludisphaera so... [more]
UPI0019B71FEA2.330e-3651.15Peroxidase-related enzyme n=1 Tax=Chthonomonadacea... [more]
A0A7C4ZHQ6_9BACT4.290e-3467.39Peroxidase n=1 Tax=Gemmataceae bacterium TaxID=205... [more]
A0A2W4RGW5_9BACT6.800e-3452.31Alkylhydroperoxidase n=1 Tax=Acidobacteria bacteri... [more]
A0A7C2P2F2_9PLAN1.220e-3353.08CMD domain-containing protein n=1 Tax=Schlesneria ... [more]
A0A538RXR9_9BACT2.130e-3364.89Peroxidase n=1 Tax=Planctomycetes bacterium TaxID=... [more]
A0A6M5YF57_9BACT8.620e-3365.91Uncharacterized protein n=1 Tax=Frigoriglobus tund... [more]
A0A354GQP7_9BACT4.300e-3273.17Peroxidase n=1 Tax=Planctomycetales bacterium TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56113contigP-wetherbeei_contig56113:121..519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1210884.HG799471_gene14734
Model size399
Max annot lvl2|Bacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue9.69e-07
EggNOG OGs2EQP8@1|root,33I96@2|Bacteria
Cds size108
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.2302577-UTR-P-wetherbeei_contig56113:120..4051683186835.2302577-UTR-P-wetherbeei_contig56113:120..405Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig56113 121..405 -
1683186835.2622645-UTR-P-wetherbeei_contig56113:513..5191683186835.2622645-UTR-P-wetherbeei_contig56113:513..519Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig56113 514..519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.242251-CDS-P-wetherbeei_contig56113:405..5131683186835.242251-CDS-P-wetherbeei_contig56113:405..513Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56113 406..513 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56113.1.1prot_P-wetherbeei_contig56113.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56113 406..513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56113.1.1

>prot_P-wetherbeei_contig56113.1.1 ID=prot_P-wetherbeei_contig56113.1.1|Name=mRNA_P-wetherbeei_contig56113.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=36bp
MMAGLAVVLRPELGLSRRQQEMIASVVSVKNSCFY*
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mRNA from alignment at P-wetherbeei_contig56113:121..519-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56113.1.1 ID=mRNA_P-wetherbeei_contig56113.1.1|Name=mRNA_P-wetherbeei_contig56113.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=399bp|location=Sequence derived from alignment at P-wetherbeei_contig56113:121..519- (Phaeothamnion wetherbeei SAG_119_79)
CGCCACATGATGGCCGGCCTGGCCGTCGTGCTCCGGCCGGAACTGGGGCT GAGCCGGCGCCAACAGGAAATGATCGCCTCGGTCGTGTCGGTCAAAAACA GTTGCTTCTACTGAACGGAGAGCCACATCGAGTTCCTCCGCCGGGCCAGC CTGGACGAGAAACTCGCCGCCGAGTTACGGCGGGACCACACTCCGGCCGA CCTCTCCGCGGCCGACCGCGCCGTCCTCGACTTCACGGTCAAGCTGACCA CGGCCGCGTACAAGATAACGCCCGCGGATCTGGCCAGGCTGCGCGAGGTC GGGTTCGACGATGTGGCGATCCTCCAGATCACCATCATCGCGGCGTGGTT CAACTACATCAACCGGGTCGCCGACGCGCTCGGCGTGGGCCGACCCGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56113:121..519-

>mRNA_P-wetherbeei_contig56113.1.1 ID=mRNA_P-wetherbeei_contig56113.1.1|Name=mRNA_P-wetherbeei_contig56113.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=108bp|location=Sequence derived from alignment at P-wetherbeei_contig56113:121..519- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGGCCGGCCTGGCCGTCGTGCTCCGGCCGGAACTGGGGCTGAGCCG
GCGCCAACAGGAAATGATCGCCTCGGTCGTGTCGGTCAAAAACAGTTGCT
TCTACTGA
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