mRNA_P-wetherbeei_contig12508.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12508.1.1
Unique NamemRNA_P-wetherbeei_contig12508.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12508.1.1 vs. uniprot
Match: D8LG80_ECTSI (40S ribosomal protein S30 n=2 Tax=PX clade TaxID=569578 RepID=D8LG80_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.940e-33
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    4 MGKVHGSLARAGKVKGQTPKVDKQEKKKNPAGRAKKRMQYNRRFVNVVTGLGGKRLGPNSNAAKV 198
            MGKVHGSLARAGKVKGQTPK+DK EKKK P GRAKKRMQYNRRFVNVVTG+GGKRLGPNSNAAKV
Sbjct:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65
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BLAST of mRNA_P-wetherbeei_contig12508.1.1 vs. uniprot
Match: K0R2S3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R2S3_THAOC)

HSP 1 Score: 110 bits (276), Expect = 5.660e-30
Identity = 55/65 (84.62%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    4 MGKVHGSLARAGKVKGQTPKVDKQEKKKNPAGRAKKRMQYNRRFVNVVTGLGGKRLGPNSNAAKV 198
            MGKVHGSLARAGKVKGQTPKV+ QEKKK P GRAKKRMQYNRR+VNVVTG+GGK++GPNSNA K+
Sbjct:   58 MGKVHGSLARAGKVKGQTPKVEAQEKKKQPRGRAKKRMQYNRRYVNVVTGMGGKKVGPNSNADKM 122
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BLAST of mRNA_P-wetherbeei_contig12508.1.1 vs. uniprot
Match: A0A7S2V4V4_9STRA (Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2V4V4_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.630e-29
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:    7 GKVHGSLARAGKVKGQTPKVDKQEKKKNPAGRAKKRMQYNRRFVNVVTGLGGKRLGPNSNAAKV 198
            GKVHGSLARAGKVKGQTPKV+ QEKKK   GRAKKRMQYNRRFVNVVTG+GGK+LGPNSNA+KV
Sbjct:   77 GKVHGSLARAGKVKGQTPKVEAQEKKKKLTGRAKKRMQYNRRFVNVVTGVGGKKLGPNSNASKV 140
[Close]
BLAST of mRNA_P-wetherbeei_contig12508.1.1 vs. uniprot
Match: A0A1E7F7Q1_9STRA (40S ribosomal protein S30 n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A1E7F7Q1_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.160e-28
Identity = 54/66 (81.82%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:    4 MGKVHGSLARAGKVKGQTPKVDKQEK-KKNPAGRAKKRMQYNRRFVNVVTGLGGKRLGPNSNAAKV 198
            MGKVHGSLARAGKVK QTPKV+KQE+ KK P GRAKKR+QYNRR+VNVVTG+GGKR+GPNSNA K+
Sbjct:    1 MGKVHGSLARAGKVKNQTPKVEKQEEGKKQPRGRAKKRLQYNRRYVNVVTGMGGKRVGPNSNADKM 66
[Close]
BLAST of mRNA_P-wetherbeei_contig12508.1.1 vs. uniprot
Match: A0A8J2X0V5_9STRA (Hypothetical protein n=3 Tax=Pelagomonadales TaxID=54409 RepID=A0A8J2X0V5_9STRA)

HSP 1 Score: 105 bits (263), Expect = 3.060e-27
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    7 GKVHGSLARAGKVKGQTPKVDKQEKKKNPAGRAKKRMQYNRRFVNVVTGLGGKRLGPNSNA 189
            GKVHGSLARAGKVKGQTPKV+KQEKKK P GRAKKRM YNRRFVNVV G+GGKR GPNSNA
Sbjct:   91 GKVHGSLARAGKVKGQTPKVEKQEKKKLPTGRAKKRMLYNRRFVNVVAGVGGKRFGPNSNA 151
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BLAST of mRNA_P-wetherbeei_contig12508.1.1 vs. uniprot
Match: A0A4D9D2L7_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2L7_9STRA)

HSP 1 Score: 104 bits (259), Expect = 3.720e-27
Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:    7 GKVHGSLARAGKVKGQTPKVDKQEKKKNPAGRAKKRMQYNRRFVNVVTGLGGKRLGPNSNAAKV 198
            GKVHGSLARAGKVKGQTPKV+KQEK+K P GRAKKR+ Y+RRF+NV TG+GGKRLGPNSNA K+
Sbjct:   77 GKVHGSLARAGKVKGQTPKVEKQEKRKTPRGRAKKRVLYSRRFLNVATGVGGKRLGPNSNADKM 140
[Close]
BLAST of mRNA_P-wetherbeei_contig12508.1.1 vs. uniprot
Match: A0A2P6VFJ9_9CHLO (40S ribosomal protein S30 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFJ9_9CHLO)

HSP 1 Score: 100 bits (249), Expect = 1.290e-26
Identity = 50/60 (83.33%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:    4 MGKVHGSLARAGKVKGQTPKVDKQEKKKNPAGRAKKRMQYNRRFVNVVTGLGGKRLGPNS 183
            MGKVHGSLARAGKV+GQTPKV KQEKKK P GRA+KR+QYNRRFVNVV G GGK+ GPNS
Sbjct:    1 MGKVHGSLARAGKVRGQTPKVPKQEKKKTPKGRARKRLQYNRRFVNVVVGFGGKKKGPNS 60
[Close]
BLAST of mRNA_P-wetherbeei_contig12508.1.1 vs. uniprot
Match: A0A484DSZ2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSZ2_BRELC)

HSP 1 Score: 99.4 bits (246), Expect = 7.080e-26
Identity = 55/65 (84.62%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    7 GKVHGSLARAGKVKGQTPKVDKQE-KKKNPAGRAKKRMQYNRRFVNVVTGLGGKRLGPNSNAAKV 198
            GKVHGSLARAGKVKGQTPKV KQE  KK   GRAKKR QYNRRFVNVV G GGK+LGPNSNAAKV
Sbjct:   21 GKVHGSLARAGKVKGQTPKVPKQEDSKKALTGRAKKRWQYNRRFVNVVAGSGGKKLGPNSNAAKV 85
[Close]
BLAST of mRNA_P-wetherbeei_contig12508.1.1 vs. uniprot
Match: G4YM34_PHYSP (Uncharacterized protein n=14 Tax=Peronosporaceae TaxID=4777 RepID=G4YM34_PHYSP)

HSP 1 Score: 99.4 bits (246), Expect = 7.280e-26
Identity = 54/64 (84.38%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    7 GKVHGSLARAGKVKGQTPKVDKQE-KKKNPAGRAKKRMQYNRRFVNVVTGLGGKRLGPNSNAAK 195
            GKVHGSLARAGKVKGQTPKV KQE  KK   GRAKKR QYNRRFVNVV G+GGK+LGPNSNAAK
Sbjct:   22 GKVHGSLARAGKVKGQTPKVPKQEDSKKALTGRAKKRWQYNRRFVNVVAGMGGKKLGPNSNAAK 85
[Close]
BLAST of mRNA_P-wetherbeei_contig12508.1.1 vs. uniprot
Match: A0A7S3LSY6_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LSY6_9STRA)

HSP 1 Score: 101 bits (251), Expect = 7.360e-26
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    7 GKVHGSLARAGKVKGQTPKVDKQEKKKNPAGRAKKRMQYNRRFVNVVTGLGGKRLGPNSNAAKV 198
            GKVHGSLARAGKVKGQTPKV KQ+KK+ P GRAKKRMQYNRRFVNVV G  GKR+GPN+NAA++
Sbjct:   77 GKVHGSLARAGKVKGQTPKVAKQDKKRVPTGRAKKRMQYNRRFVNVVNGGMGKRVGPNNNAARL 140
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12508.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG80_ECTSI1.940e-3392.3140S ribosomal protein S30 n=2 Tax=PX clade TaxID=5... [more]
K0R2S3_THAOC5.660e-3084.62Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2V4V4_9STRA2.630e-2987.50Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696... [more]
A0A1E7F7Q1_9STRA3.160e-2881.8240S ribosomal protein S30 n=4 Tax=Bacillariophyta ... [more]
A0A8J2X0V5_9STRA3.060e-2788.52Hypothetical protein n=3 Tax=Pelagomonadales TaxID... [more]
A0A4D9D2L7_9STRA3.720e-2781.25Ubiquitin-like domain-containing protein n=2 Tax=M... [more]
A0A2P6VFJ9_9CHLO1.290e-2683.3340S ribosomal protein S30 n=1 Tax=Micractinium con... [more]
A0A484DSZ2_BRELC7.080e-2684.62Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
G4YM34_PHYSP7.280e-2684.38Uncharacterized protein n=14 Tax=Peronosporaceae T... [more]
A0A7S3LSY6_9STRA7.360e-2681.25Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12508contigP-wetherbeei_contig12508:1778..1978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LG80
Preferred nameRPS30
PFAMsRibosomal_S30
Model size201
Max annot lvl2759|Eukaryota
KEGG koko:K02983
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
Evalue2.14e-34
EggNOG OGsKOG0009@1|root,KOG0009@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein S30
Ec32 orthologEc-17_004070.1
Descriptionstructural constituent of ribosome
Cds size198
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185951.200602-CDS-P-wetherbeei_contig12508:1777..19751683185951.200602-CDS-P-wetherbeei_contig12508:1777..1975Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12508 1778..1975 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185951.2118106-UTR-P-wetherbeei_contig12508:1975..19781683185951.2118106-UTR-P-wetherbeei_contig12508:1975..1978Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12508 1976..1978 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12508.1.1prot_P-wetherbeei_contig12508.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12508 1778..1975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12508.1.1

>prot_P-wetherbeei_contig12508.1.1 ID=prot_P-wetherbeei_contig12508.1.1|Name=mRNA_P-wetherbeei_contig12508.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
MGKVHGSLARAGKVKGQTPKVDKQEKKKNPAGRAKKRMQYNRRFVNVVTG
LGGKRLGPNSNAAKV*
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mRNA from alignment at P-wetherbeei_contig12508:1778..1978-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12508.1.1 ID=mRNA_P-wetherbeei_contig12508.1.1|Name=mRNA_P-wetherbeei_contig12508.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig12508:1778..1978- (Phaeothamnion wetherbeei SAG_119_79)
GCCATGGGCAAGGTGCACGGCTCGCTGGCTCGTGCCGGCAAGGTCAAGGG
CCAGACGCCCAAGGTCGACAAGCAAGAGAAGAAGAAGAATCCGGCCGGGC
GGGCAAAGAAACGGATGCAGTACAATCGGCGCTTCGTCAACGTCGTCACC
GGACTCGGCGGCAAGCGCCTGGGACCGAACTCGAACGCCGCCAAGGTCTA
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12508:1778..1978-

>mRNA_P-wetherbeei_contig12508.1.1 ID=mRNA_P-wetherbeei_contig12508.1.1|Name=mRNA_P-wetherbeei_contig12508.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig12508:1778..1978- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCAAGGTGCACGGCTCGCTGGCTCGTGCCGGCAAGGTCAAGGGCCA
GACGCCCAAGGTCGACAAGCAAGAGAAGAAGAAGAATCCGGCCGGGCGGG
CAAAGAAACGGATGCAGTACAATCGGCGCTTCGTCAACGTCGTCACCGGA
CTCGGCGGCAAGCGCCTGGGACCGAACTCGAACGCCGCCAAGGTCTAA
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