mRNA_P-wetherbeei_contig56103.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56103.1.1
Unique NamemRNA_P-wetherbeei_contig56103.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56103.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56103contigP-wetherbeei_contig56103:1..204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog795359.TOPB45_0817
PFAMsPDZ_2
Model size204
Max annot lvl200940|Thermodesulfobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.79e-10
EggNOG OGsCOG0265@1|root,COG1293@1|root,COG0265@2|Bacteria,COG1293@2|Bacteria,2GH1Q@200940|Thermodesulfobacteria
DescriptionDomain present in PSD-95, Dlg, and ZO-1/2.
Cds size204
COG categoryKO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.1468132-CDS-P-wetherbeei_contig56103:0..2041683186835.1468132-CDS-P-wetherbeei_contig56103:0..204Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56103 1..204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56103.1.1prot_P-wetherbeei_contig56103.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56103 1..204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56103.1.1

>prot_P-wetherbeei_contig56103.1.1 ID=prot_P-wetherbeei_contig56103.1.1|Name=mRNA_P-wetherbeei_contig56103.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=68bp
QAPQAFNVLDQVEYDPRTQKVSLAGHYDPAFGSQRIPYLQYFATFLDYPR
PRFSLDPTPESRAAWNEL
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mRNA from alignment at P-wetherbeei_contig56103:1..204-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56103.1.1 ID=mRNA_P-wetherbeei_contig56103.1.1|Name=mRNA_P-wetherbeei_contig56103.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig56103:1..204- (Phaeothamnion wetherbeei SAG_119_79)
CAAGCGCCGCAGGCATTCAACGTTCTCGATCAGGTCGAATACGACCCGAG
AACGCAGAAGGTAAGCCTCGCGGGTCATTATGACCCCGCCTTCGGTTCCC
AGCGCATTCCTTATCTGCAGTATTTCGCCACCTTCCTCGATTATCCGCGC
CCTAGGTTCTCCCTCGATCCCACGCCGGAATCGCGCGCGGCGTGGAACGA
GCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56103:1..204-

>mRNA_P-wetherbeei_contig56103.1.1 ID=mRNA_P-wetherbeei_contig56103.1.1|Name=mRNA_P-wetherbeei_contig56103.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=204bp|location=Sequence derived from alignment at P-wetherbeei_contig56103:1..204- (Phaeothamnion wetherbeei SAG_119_79)
CAAGCGCCGCAGGCATTCAACGTTCTCGATCAGGTCGAATACGACCCGAG
AACGCAGAAGGTAAGCCTCGCGGGTCATTATGACCCCGCCTTCGGTTCCC
AGCGCATTCCTTATCTGCAGTATTTCGCCACCTTCCTCGATTATCCGCGC
CCTAGGTTCTCCCTCGATCCCACGCCGGAATCGCGCGCGGCGTGGAACGA
GCTG
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