mRNA_P-wetherbeei_contig56092.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56092.1.1
Unique NamemRNA_P-wetherbeei_contig56092.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56092.1.1 vs. uniprot
Match: A0A7C2VJ02_9BACT (Metal-dependent transcriptional regulator n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C2VJ02_9BACT)

HSP 1 Score: 68.9 bits (167), Expect = 8.520e-13
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    7 AMEDYLKAIFRLQEGTGRVTTQALARRLSVAPASATNMLKRLAELQLVNY 156
            AMEDYLKAI++LQ+  G  TTQALAR L V PASATNMLK+LA L+LV Y
Sbjct:    7 AMEDYLKAIYKLQQQAGSATTQALARLLKVKPASATNMLKKLARLKLVRY 56
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BLAST of mRNA_P-wetherbeei_contig56092.1.1 vs. uniprot
Match: A0A3M1LE39_9CHLR (Metal-dependent transcriptional regulator n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1LE39_9CHLR)

HSP 1 Score: 66.6 bits (161), Expect = 5.110e-12
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    7 AMEDYLKAIFRLQEGTGRVTTQALARRLSVAPASATNMLKRLAELQLVNY 156
            AMEDYLKAI++LQ+ TGR TT A+A  L VAPAS T MLK+LA L+LV+Y
Sbjct:    5 AMEDYLKAIYKLQQPTGRATTTAIAEALEVAPASVTGMLKKLAALKLVDY 54
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BLAST of mRNA_P-wetherbeei_contig56092.1.1 vs. uniprot
Match: A0A399ZVN7_9CHLR (DtxR family transcriptional regulator (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A399ZVN7_9CHLR)

HSP 1 Score: 63.2 bits (152), Expect = 6.280e-12
Identity = 33/52 (63.46%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 SPAMEDYLKAIFRLQEGTGRVTTQALARRLSVAPASATNMLKRLAELQLVNY 156
            S ++E+YLKAI++LQE +  VTT ALA+ L+VAPASATNM+K+LA LQLV +
Sbjct:    3 SASIENYLKAIYQLQENSETVTTTALAQYLAVAPASATNMIKKLARLQLVRH 54
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BLAST of mRNA_P-wetherbeei_contig56092.1.1 vs. uniprot
Match: A0A2H5XBB5_9BACT (Iron-dependent repressor IdeR n=1 Tax=bacterium HR17 TaxID=2035412 RepID=A0A2H5XBB5_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 9.180e-12
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 SPAMEDYLKAIFRLQEGTGRVTTQALARRLSVAPASATNMLKRLAELQLVNY 156
            +PAMEDYLK I++LQ+   +VTTQA+A+ + V PAS TNMLK+LA L+LV Y
Sbjct:    5 TPAMEDYLKVIYKLQQKDAKVTTQAIAKAMRVKPASVTNMLKKLARLRLVQY 56
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BLAST of mRNA_P-wetherbeei_contig56092.1.1 vs. uniprot
Match: A0A1Q7FUR2_9BACT (HTH dtxR-type domain-containing protein n=1 Tax=Armatimonadetes bacterium 13_1_40CM_64_14 TaxID=1805026 RepID=A0A1Q7FUR2_9BACT)

HSP 1 Score: 62.0 bits (149), Expect = 2.730e-10
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:   10 MEDYLKAIFRLQEGTGRVTTQALARRLSVAPASATNMLKRLAELQLVNY 156
            MEDYLKAI++LQ G   V+T ALARRL VA ASAT M++RLA L+LV+Y
Sbjct:    8 MEDYLKAIYKLQRGRDSVSTSALARRLHVAAASATAMIQRLARLKLVSY 56
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BLAST of mRNA_P-wetherbeei_contig56092.1.1 vs. uniprot
Match: A0A7V9VII6_9CHLR (Metal-dependent transcriptional regulator n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VII6_9CHLR)

HSP 1 Score: 62.0 bits (149), Expect = 3.520e-10
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 SPAMEDYLKAIFRLQEGTGRVTTQALARRLSVAPASATNMLKRLAELQLVNY 156
            S AM+DYLKAI+RLQ+G GR TT  LA  L ++  SATNM+KRLAE+ LV +
Sbjct:   21 SVAMQDYLKAIYRLQQGDGRATTLNLANELGLSGPSATNMIKRLAEISLVEH 72
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BLAST of mRNA_P-wetherbeei_contig56092.1.1 vs. uniprot
Match: A0A849ZXG6_9CHLR (Metal-dependent transcriptional regulator n=1 Tax=Caldilineales bacterium TaxID=2306055 RepID=A0A849ZXG6_9CHLR)

HSP 1 Score: 61.2 bits (147), Expect = 5.970e-10
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    7 AMEDYLKAIFRLQEGTGRVTTQALARRLSVAPASATNMLKRLAELQLVNY 156
            A+EDYLK IF +Q   G+V T  LA RL VAPASAT M+KRLAE+ LV Y
Sbjct:    5 AVEDYLKTIFEIQRERGKVATTMLAERLGVAPASATGMIKRLAEMHLVVY 54
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BLAST of mRNA_P-wetherbeei_contig56092.1.1 vs. uniprot
Match: A0A7C5E9Y4_9CHLR (Metal-dependent transcriptional regulator n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C5E9Y4_9CHLR)

HSP 1 Score: 60.5 bits (145), Expect = 1.020e-9
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   10 MEDYLKAIFRLQEGTGRVTTQALARRLSVAPASATNMLKRLAELQLVNY 156
            M+DYLKAI++L E  G+  T ALA  L VAPAS TNM K+LAEL LV Y
Sbjct:    1 MQDYLKAIYKLHEQNGQAPTSALAEMLGVAPASVTNMCKKLAELHLVEY 49
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BLAST of mRNA_P-wetherbeei_contig56092.1.1 vs. uniprot
Match: B9L1D6_THERP (Transcriptional repressor n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) TaxID=309801 RepID=B9L1D6_THERP)

HSP 1 Score: 60.5 bits (145), Expect = 1.320e-9
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    7 AMEDYLKAIFRLQEGTGRVTTQALARRLSVAPASATNMLKRLAELQLVNY 156
            AMEDYLK IF L+   GRVTTQA+A RL V   S TNMLKR+A L LV++
Sbjct:   16 AMEDYLKVIFALERDEGRVTTQAIAERLRVQSPSVTNMLKRMAALDLVDH 65
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BLAST of mRNA_P-wetherbeei_contig56092.1.1 vs. uniprot
Match: A0A7C5UIH0_9BACT (Metal-dependent transcriptional regulator n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C5UIH0_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.870e-9
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 SPAMEDYLKAIFRLQEGTGRVTTQALARRLSVAPASATNMLKRLAELQLVNY 156
            +PAMEDYLK I++LQ+ +  VTTQA+A  + +  AS TNMLK+LA L+LV Y
Sbjct:    5 TPAMEDYLKVIYKLQKRSEVVTTQAIAEAMKIKAASVTNMLKKLARLKLVRY 56
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56092.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C2VJ02_9BACT8.520e-1372.00Metal-dependent transcriptional regulator n=1 Tax=... [more]
A0A3M1LE39_9CHLR5.110e-1268.00Metal-dependent transcriptional regulator n=1 Tax=... [more]
A0A399ZVN7_9CHLR6.280e-1263.46DtxR family transcriptional regulator (Fragment) n... [more]
A0A2H5XBB5_9BACT9.180e-1261.54Iron-dependent repressor IdeR n=1 Tax=bacterium HR... [more]
A0A1Q7FUR2_9BACT2.730e-1067.35HTH dtxR-type domain-containing protein n=1 Tax=Ar... [more]
A0A7V9VII6_9CHLR3.520e-1061.54Metal-dependent transcriptional regulator n=1 Tax=... [more]
A0A849ZXG6_9CHLR5.970e-1064.00Metal-dependent transcriptional regulator n=1 Tax=... [more]
A0A7C5E9Y4_9CHLR1.020e-963.27Metal-dependent transcriptional regulator n=1 Tax=... [more]
B9L1D6_THERP1.320e-964.00Transcriptional repressor n=1 Tax=Thermomicrobium ... [more]
A0A7C5UIH0_9BACT1.870e-957.69Metal-dependent transcriptional regulator n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56092contigP-wetherbeei_contig56092:3..158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog309801.trd_1195
PFAMsFe_dep_repr_C,Fe_dep_repress,FeoA
Model size156
Max annot lvl189775|Thermomicrobia
KEGG koko:K03709
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue7.15e-10
EggNOG OGsCOG1321@1|root,COG1918@1|root,COG1321@2|Bacteria,COG1918@2|Bacteria,2G6N4@200795|Chloroflexi,27YBV@189775|Thermomicrobia
DescriptionFeoA
Cds size147
COG categoryK
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186834.662338-CDS-P-wetherbeei_contig56092:2..1491683186834.662338-CDS-P-wetherbeei_contig56092:2..149Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56092 3..149 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186834.6744206-UTR-P-wetherbeei_contig56092:149..1581683186834.6744206-UTR-P-wetherbeei_contig56092:149..158Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig56092 150..158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56092.1.1prot_P-wetherbeei_contig56092.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56092 3..149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56092.1.1

>prot_P-wetherbeei_contig56092.1.1 ID=prot_P-wetherbeei_contig56092.1.1|Name=mRNA_P-wetherbeei_contig56092.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=49bp
MEDYLKAIFRLQEGTGRVTTQALARRLSVAPASATNMLKRLAELQLVNY
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mRNA from alignment at P-wetherbeei_contig56092:3..158-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56092.1.1 ID=mRNA_P-wetherbeei_contig56092.1.1|Name=mRNA_P-wetherbeei_contig56092.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=156bp|location=Sequence derived from alignment at P-wetherbeei_contig56092:3..158- (Phaeothamnion wetherbeei SAG_119_79)
AGTCCCGCCATGGAGGACTACCTGAAGGCTATTTTTCGCCTCCAGGAAGG
CACCGGTCGGGTCACGACCCAGGCCCTGGCGCGTCGACTCTCTGTAGCGC
CCGCGTCTGCCACCAATATGCTCAAGCGTTTGGCCGAGCTCCAGCTGGTG
AACTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56092:3..158-

>mRNA_P-wetherbeei_contig56092.1.1 ID=mRNA_P-wetherbeei_contig56092.1.1|Name=mRNA_P-wetherbeei_contig56092.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=147bp|location=Sequence derived from alignment at P-wetherbeei_contig56092:3..158- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGACTACCTGAAGGCTATTTTTCGCCTCCAGGAAGGCACCGGTCG
GGTCACGACCCAGGCCCTGGCGCGTCGACTCTCTGTAGCGCCCGCGTCTG
CCACCAATATGCTCAAGCGTTTGGCCGAGCTCCAGCTGGTGAACTAC
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