mRNA_P-wetherbeei_contig56057.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56057.1.1
Unique NamemRNA_P-wetherbeei_contig56057.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56057.1.1 vs. uniprot
Match: A0A2M7NA49_9PROT (AsmA domain-containing protein (Fragment) n=1 Tax=Gallionellales bacterium CG_4_10_14_3_um_filter_54_96 TaxID=1974013 RepID=A0A2M7NA49_9PROT)

HSP 1 Score: 63.5 bits (153), Expect = 1.120e-10
Identity = 37/111 (33.33%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    1 MKTRFRLFVIIAVSVLGLTAAAPWLVPTSAWKGPLEEAVSRALDAPVTLGAIDVVLLPLPHVTLKDMDVGKGA-ITLSAAAAYPELLSLFSSPRRVRRVELKQLHINPEGL 330
            MK   R+ + +A+ +LGL  A P+ +    +   LE+AVS  L+ PV++  I    LP+PHVT++ + VGK A + L      P++ SL+   R ++R+E+  L +  E +
Sbjct:    1 MKWLKRILIALAL-LLGLALALPFFISLDDYIPQLEKAVSARLNEPVSIARIRFAALPVPHVTIEGITVGKSADVKLGLVTVTPDMYSLWQPVRVIKRIEIDTLTLTREAI 110          
BLAST of mRNA_P-wetherbeei_contig56057.1.1 vs. uniprot
Match: A0A2M7C398_9PROT (Uncharacterized protein n=2 Tax=unclassified Nitrosomonadales TaxID=1660158 RepID=A0A2M7C398_9PROT)

HSP 1 Score: 63.9 bits (154), Expect = 1.340e-9
Identity = 37/111 (33.33%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    1 MKTRFRLFVIIAVSVLGLTAAAPWLVPTSAWKGPLEEAVSRALDAPVTLGAIDVVLLPLPHVTLKDMDVGKGA-ITLSAAAAYPELLSLFSSPRRVRRVELKQLHINPEGL 330
            MK   R+ + +A+ +LGL  A P+ +    +   LE+AVS  L+ PV++  I    LP+PHVT++ + VGK A + L      P++ SL+   R ++R+E+  L +  E +
Sbjct:    1 MKWLKRILIALAL-LLGLALALPFFISLDDYLPQLEKAVSARLNEPVSIARIRFAALPVPHVTIEGITVGKSADVKLGLVTVTPDMYSLWQPVRVIKRIEIDTLTLTREAI 110          
BLAST of mRNA_P-wetherbeei_contig56057.1.1 vs. uniprot
Match: A0A1J4YYH7_9PROT (AsmA domain-containing protein (Fragment) n=2 Tax=Nitrosomonadales TaxID=32003 RepID=A0A1J4YYH7_9PROT)

HSP 1 Score: 63.5 bits (153), Expect = 1.640e-9
Identity = 37/111 (33.33%), Postives = 63/111 (56.76%), Query Frame = 1
Query:    1 MKTRFRLFVIIAVSVLGLTAAAPWLVPTSAWKGPLEEAVSRALDAPVTLGAIDVVLLPLPHVTLKDMDVGKGA-ITLSAAAAYPELLSLFSSPRRVRRVELKQLHINPEGL 330
            MK   R+ + +A+ +LGL  A P+ +    +   LE+AVS  L+ PV++  I    LP+PHVT++ + VGK A + L      P++ SL+   R ++R+E+  L +  E +
Sbjct:    1 MKWLKRILIALAL-LLGLALALPFFISLDDYIPQLEKAVSARLNEPVSIARIRFAALPVPHVTIEGITVGKSADVKLGLVTVTPDIYSLWQPVRVIKRIEIDTLTLTREAI 110          
BLAST of mRNA_P-wetherbeei_contig56057.1.1 vs. uniprot
Match: A0A3N5X6X3_9PROT (AsmA_2 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A3N5X6X3_9PROT)

HSP 1 Score: 57.4 bits (137), Expect = 2.650e-7
Identity = 35/110 (31.82%), Postives = 58/110 (52.73%), Query Frame = 1
Query:    1 MKTRFRLFVIIAVSVLGLTAAAPWLVPTSAWKGPLEEAVSRALDAPVTLGAIDVVLLPLPHVTLKDMDVGKGAITLSAAAAYPELLSLFSSPRRVRRVELKQLHINPEGL 330
            MK   RL ++ AV V  L A  P+ V    ++  +E  ++  L  PV L  + +  LPLPHV +  +++GK  + +   A  P+LLSL +  + +R V++  L +   GL
Sbjct:    1 MKWLKRLVLLFAVVVAAL-AIVPFFVSLDDYRPRIERLLAEKLKEPVKLKNLRLAGLPLPHVIIDGIEIGKADVKVGRIAVTPDLLSLLTDTKIIRSVDITGLVLTQRGL 109          
BLAST of mRNA_P-wetherbeei_contig56057.1.1 vs. uniprot
Match: A0A0S8CAB6_9PROT (AsmA_2 domain-containing protein n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8CAB6_9PROT)

HSP 1 Score: 50.8 bits (120), Expect = 5.240e-5
Identity = 31/94 (32.98%), Postives = 49/94 (52.13%), Query Frame = 1
Query:   52 LTAAAPWLVPTSAWKGPLEEAVSRALDAPVTLGAIDVVLLPLPHVTLKDMDVGK-GAITLSAAAAYPELLSLFSSPRRVRRVELKQLHINPEGL 330
            L A AP  +  + +   +E  VS  L  PV +  +    LPLPHV +  + +GK GAIT +     P+L SL  S R +R + ++QL +  + +
Sbjct:   17 LLAVAPLFISLNDYVLLVEAEVSAKLGEPVKITGLRAGGLPLPHVAVDGISIGKTGAITAANVTITPDLWSLLGSTRVIRSIRIEQLVLTQKAI 110          
BLAST of mRNA_P-wetherbeei_contig56057.1.1 vs. uniprot
Match: A0A1G0B641_9PROT (Uncharacterized protein n=2 Tax=Nitrosomonadales TaxID=32003 RepID=A0A1G0B641_9PROT)

HSP 1 Score: 50.8 bits (120), Expect = 5.250e-5
Identity = 33/111 (29.73%), Postives = 55/111 (49.55%), Query Frame = 1
Query:    1 MKTRFRLFVIIAVSVLGLTAAAPWLVPTSAWKGPLEEAVSRALDAPVTLGAIDVVLLPLPHVTLKDMDVGKGA-ITLSAAAAYPELLSLFSSPRRVRRVELKQLHINPEGL 330
            MK   R+ + +A+ +L +  A P+ +    +   +E+  S  L  PVT+ +I    LPLPHVT+  + VGK   I L      P L SL      ++ +E+  L +  +G+
Sbjct:    1 MKWLKRILISLAI-LLAIAVALPFFISLDDYIPQIEKKASAGLKEPVTVKSIRFSALPLPHVTIDGIAVGKTHDIRLGKVVVTPALFSLLQPTTVIKSIEIDSLVLTQKGM 110          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56057.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2M7NA49_9PROT1.120e-1033.33AsmA domain-containing protein (Fragment) n=1 Tax=... [more]
A0A2M7C398_9PROT1.340e-933.33Uncharacterized protein n=2 Tax=unclassified Nitro... [more]
A0A1J4YYH7_9PROT1.640e-933.33AsmA domain-containing protein (Fragment) n=2 Tax=... [more]
A0A3N5X6X3_9PROT2.650e-731.82AsmA_2 domain-containing protein n=1 Tax=Betaprote... [more]
A0A0S8CAB6_9PROT5.240e-532.98AsmA_2 domain-containing protein n=1 Tax=Betaprote... [more]
A0A1G0B641_9PROT5.250e-529.73Uncharacterized protein n=2 Tax=Nitrosomonadales T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56057contigP-wetherbeei_contig56057:137..466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1163617.SCD_n01552
PFAMsAsmA,AsmA_2
Model size330
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.25e-08
EggNOG OGsCOG2982@1|root,COG2982@2|Bacteria,1RD61@1224|Proteobacteria,2VS09@28216|Betaproteobacteria
DescriptionProtein involved in outer membrane biogenesis
Cds size330
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186834.303893-CDS-P-wetherbeei_contig56057:136..4661683186834.303893-CDS-P-wetherbeei_contig56057:136..466Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56057 137..466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56057.1.1prot_P-wetherbeei_contig56057.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56057 137..466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56057.1.1

>prot_P-wetherbeei_contig56057.1.1 ID=prot_P-wetherbeei_contig56057.1.1|Name=mRNA_P-wetherbeei_contig56057.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
MKTRFRLFVIIAVSVLGLTAAAPWLVPTSAWKGPLEEAVSRALDAPVTLG
AIDVVLLPLPHVTLKDMDVGKGAITLSAAAAYPELLSLFSSPRRVRRVEL
KQLHINPEGL
back to top

mRNA from alignment at P-wetherbeei_contig56057:137..466+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56057.1.1 ID=mRNA_P-wetherbeei_contig56057.1.1|Name=mRNA_P-wetherbeei_contig56057.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig56057:137..466+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGACCCGATTCAGGTTATTTGTCATTATTGCGGTGAGTGTCCTCGG CCTCACTGCGGCGGCCCCGTGGCTGGTGCCTACGTCCGCCTGGAAGGGCC CGCTGGAAGAGGCGGTTTCCAGGGCGCTGGACGCGCCGGTCACCCTGGGC GCCATCGACGTGGTGCTGTTGCCGCTGCCGCACGTCACCCTCAAGGACAT GGATGTCGGCAAGGGCGCCATCACGCTTTCTGCCGCGGCAGCTTATCCGG AGCTGTTGTCGTTGTTCTCCTCGCCCCGGCGCGTGCGCCGGGTGGAACTG AAGCAACTGCACATCAACCCCGAGGGGCTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig56057:137..466+

>mRNA_P-wetherbeei_contig56057.1.1 ID=mRNA_P-wetherbeei_contig56057.1.1|Name=mRNA_P-wetherbeei_contig56057.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig56057:137..466+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGACCCGATTCAGGTTATTTGTCATTATTGCGGTGAGTGTCCTCGG
CCTCACTGCGGCGGCCCCGTGGCTGGTGCCTACGTCCGCCTGGAAGGGCC
CGCTGGAAGAGGCGGTTTCCAGGGCGCTGGACGCGCCGGTCACCCTGGGC
GCCATCGACGTGGTGCTGTTGCCGCTGCCGCACGTCACCCTCAAGGACAT
GGATGTCGGCAAGGGCGCCATCACGCTTTCTGCCGCGGCAGCTTATCCGG
AGCTGTTGTCGTTGTTCTCCTCGCCCCGGCGCGTGCGCCGGGTGGAACTG
AAGCAACTGCACATCAACCCCGAGGGGCTG
back to top