mRNA_P-wetherbeei_contig56052.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56052.1.1
Unique NamemRNA_P-wetherbeei_contig56052.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig56052.1.1 vs. uniprot
Match: UPI001128A559 (VPLPA-CTERM sorting domain-containing protein n=1 Tax=Methylomonas koyamae TaxID=702114 RepID=UPI001128A559)

HSP 1 Score: 60.5 bits (145), Expect = 2.890e-9
Identity = 33/63 (52.38%), Postives = 40/63 (63.49%), Query Frame = 1
Query:    1 SAEDRYFAAIFDGGIARISITSLNGSGDWEVDHLQYGIAAVPVPAAVWMLAPALAGLLGLRRK 189
            + EDR+F  I   GI+ I I S+ G  +WEVDHLQYG A VPVPA V +    L G LGL R+
Sbjct:  185 TGEDRFFGVINASGISAIRI-SMPGKNNWEVDHLQYGYAPVPVPATVLLFLSGL-GCLGLARR 245          
BLAST of mRNA_P-wetherbeei_contig56052.1.1 vs. uniprot
Match: A0A1W9JQD3_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium ST_bin11 TaxID=1978759 RepID=A0A1W9JQD3_9PROT)

HSP 1 Score: 60.1 bits (144), Expect = 3.380e-9
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    1 SAEDRYFAAIFDGGIARISITSLNGSGDWEVDHLQYGIAAVPVPAAVWMLAPALAGL-LGLRRK 189
            + EDR+F  I  GGI+ I I S+ G  +WEVDHLQYG A VP+PA+V +    L+ L  GLR K
Sbjct:  163 TGEDRFFGVINAGGISAIRI-SMPGKNNWEVDHLQYGYAPVPLPASVVLFLSGLSWLGFGLRSK 225          
BLAST of mRNA_P-wetherbeei_contig56052.1.1 vs. uniprot
Match: A0A2T5K279_9PROT (Putative secreted protein with PEP-CTERM sorting signal n=1 Tax=Nitrosospira sp. Nsp2 TaxID=136548 RepID=A0A2T5K279_9PROT)

HSP 1 Score: 59.3 bits (142), Expect = 6.090e-9
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 SAEDRYFAAIFDGGIARISITSLNGSGDWEVDHLQYGIA-----AVPVPAAVWMLAPALAGLLGLRRK 189
            +AEDR+F      GI  I ITSL+ S DWE+DHLQYG+A     AVP P  + +L   +AG+  LRR+
Sbjct:  167 TAEDRFFGVTSASGIGSIRITSLS-STDWEIDHLQYGLASVPSGAVPEPGTLALLIAGVAGIRFLRRR 233          
BLAST of mRNA_P-wetherbeei_contig56052.1.1 vs. uniprot
Match: UPI001AD3579B (Uncharacterized protein n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=UPI001AD3579B)

HSP 1 Score: 52.4 bits (124), Expect = 2.020e-6
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    4 AEDRYFAAIFDGGIARISITSLNGSGDWEVDHLQYGIAAVPVPAAVWMLAPALAGLLGLRRK 189
            AEDR+F  +  GGI+RI I  +  SGD+EVDHLQ+G+  VP P    ++   +A L G RR+
Sbjct:  160 AEDRFFGVLHPGGISRIEI-GMPDSGDFEVDHLQFGVP-VPEPGTATLVVAGIAAL-GWRRR 218          
BLAST of mRNA_P-wetherbeei_contig56052.1.1 vs. uniprot
Match: A0A4Q3UBG1_9BACT (PEP-CTERM sorting domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A4Q3UBG1_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 2.970e-6
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query:    7 EDRYFAAIFDGGIARISITSLNGSGDWEVDHLQYGIAAVPVPAAVWMLAPALAGLLGLRR 186
            +D ++ AI  GGI++I I S  G    E+DHLQYG+ AVP PA++  LA  +A +L  RR
Sbjct:  170 DDYFYGAINPGGISKIHIHS--GVAGIELDHLQYGVEAVPEPASIAALAVGIAAMLRRRR 227          
BLAST of mRNA_P-wetherbeei_contig56052.1.1 vs. uniprot
Match: A0A2E2DAM9_9GAMM (Uncharacterized protein n=1 Tax=Methylophaga sp. TaxID=2024840 RepID=A0A2E2DAM9_9GAMM)

HSP 1 Score: 50.8 bits (120), Expect = 7.290e-6
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   19 FAAIFDGGIARISITSLNGSGDWEVDHLQY----GIAAVPVPAAVWMLAPALAGLLGLRRKR 192
            F A+FD  ++ +   S    G   + H+       I+AVPVPAA+W+ APAL GL+GLRRK+
Sbjct:  154 FVALFDDAVSELYFKSFIKQG---ISHIALFNTANISAVPVPAALWLFAPALLGLVGLRRKQ 212          
BLAST of mRNA_P-wetherbeei_contig56052.1.1 vs. uniprot
Match: A0A2T4CZF1_9GAMM (Uncharacterized protein n=1 Tax=Pseudidiomarina aestuarii TaxID=624146 RepID=A0A2T4CZF1_9GAMM)

HSP 1 Score: 49.7 bits (117), Expect = 1.480e-5
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   28 IFDGGIARISITSLNGSGDWEVDHLQY-GIAAVPVPAAVWMLAPALAGLLGLRRK 189
            +F+  I ++S T+  G    +V H+ Y   +AVP+PAA+W+LAP L G LGLRR+
Sbjct:  130 LFNSPITQLSYTTHTGQ---DVSHIAYFNTSAVPLPAALWLLAPTLIGFLGLRRR 181          
BLAST of mRNA_P-wetherbeei_contig56052.1.1 vs. uniprot
Match: A0A2E2DAE7_9GAMM (Uncharacterized protein n=1 Tax=Methylophaga sp. TaxID=2024840 RepID=A0A2E2DAE7_9GAMM)

HSP 1 Score: 48.9 bits (115), Expect = 2.390e-5
Identity = 28/66 (42.42%), Postives = 43/66 (65.15%), Query Frame = 1
Query:    1 SAEDRYFAAIFDGGIARISITSLNGSGD-WEVDHLQYGIAAVPVPAAVWMLAPALAGLLGLRRKRV 195
            S + R+   I+ G +A +++  LNG+ + ++ D     ++ VPVPAA ++LAPAL G LGLRRK V
Sbjct:  103 SGDFRFTGLIYAGTVASVNL--LNGNRNVFKYDVSLQSVSEVPVPAAFFLLAPALLGFLGLRRKNV 166          
BLAST of mRNA_P-wetherbeei_contig56052.1.1 vs. uniprot
Match: A0A3D1CGE2_9GAMM (Uncharacterized protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A3D1CGE2_9GAMM)

HSP 1 Score: 48.1 bits (113), Expect = 5.550e-5
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   28 IFDGGIARISITSLNGSGDWEVDHLQY---GIAAVPVPAAVWMLAPALAGLLGLRRK 189
            +F+  I+ +     NG    +V H+ Y    ++ VPVPAA+W+ APA+ GLLGLRR+
Sbjct:  127 LFNSPISSLDFLPHNGK---DVSHIAYFNTSVSEVPVPAALWLFAPAMMGLLGLRRR 180          
BLAST of mRNA_P-wetherbeei_contig56052.1.1 vs. uniprot
Match: A0A0E9MNF2_9SPHN (PEP-CTERM domain-containing protein n=1 Tax=Sphingomonas changbaiensis NBRC 104936 TaxID=1219043 RepID=A0A0E9MNF2_9SPHN)

HSP 1 Score: 48.1 bits (113), Expect = 7.660e-5
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 1
Query:    1 SAEDRYFAAIFDGGIARISITSLNGSGDWEVDHLQYGIAAV---PVPAAVWMLAPALAGLLG 177
            +AEDR++ A   GGI+R++I++    G  E+DH+QYGIAAV   P PAA W L     G+ G
Sbjct:  158 TAEDRFYGATNPGGISRLTISN---PGATEIDHIQYGIAAVRGVPEPAA-WALMLGGLGVAG 215          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56052.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
UPI001128A5592.890e-952.38VPLPA-CTERM sorting domain-containing protein n=1 ... [more]
A0A1W9JQD3_9PROT3.380e-951.56Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A2T5K279_9PROT6.090e-948.53Putative secreted protein with PEP-CTERM sorting s... [more]
UPI001AD3579B2.020e-646.77Uncharacterized protein n=1 Tax=Myxococcaceae bact... [more]
A0A4Q3UBG1_9BACT2.970e-646.67PEP-CTERM sorting domain-containing protein n=1 Ta... [more]
A0A2E2DAM9_9GAMM7.290e-643.55Uncharacterized protein n=1 Tax=Methylophaga sp. T... [more]
A0A2T4CZF1_9GAMM1.480e-545.45Uncharacterized protein n=1 Tax=Pseudidiomarina ae... [more]
A0A2E2DAE7_9GAMM2.390e-542.42Uncharacterized protein n=1 Tax=Methylophaga sp. T... [more]
A0A3D1CGE2_9GAMM5.550e-542.11Uncharacterized protein n=2 Tax=Gammaproteobacteri... [more]
A0A0E9MNF2_9SPHN7.660e-546.77PEP-CTERM domain-containing protein n=1 Tax=Sphing... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56052contigP-wetherbeei_contig56052:321..518 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog306281.AJLK01000122_gene420
Model size198
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.61e-08
EggNOG OGs2E8PN@1|root,3330T@2|Bacteria,1GFR6@1117|Cyanobacteria
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186834.245257-CDS-P-wetherbeei_contig56052:320..5181683186834.245257-CDS-P-wetherbeei_contig56052:320..518Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56052 321..518 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56052.1.1prot_P-wetherbeei_contig56052.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56052 321..518 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56052.1.1

>prot_P-wetherbeei_contig56052.1.1 ID=prot_P-wetherbeei_contig56052.1.1|Name=mRNA_P-wetherbeei_contig56052.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=66bp
SAEDRYFAAIFDGGIARISITSLNGSGDWEVDHLQYGIAAVPVPAAVWML
APALAGLLGLRRKRV*
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mRNA from alignment at P-wetherbeei_contig56052:321..518-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56052.1.1 ID=mRNA_P-wetherbeei_contig56052.1.1|Name=mRNA_P-wetherbeei_contig56052.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig56052:321..518- (Phaeothamnion wetherbeei SAG_119_79)
TCGGCCGAAGACCGCTACTTCGCTGCAATCTTCGATGGCGGTATTGCTCG TATCTCCATCACGAGTTTGAACGGTTCTGGTGATTGGGAAGTCGATCACC TGCAGTACGGCATTGCGGCCGTGCCGGTGCCGGCTGCGGTATGGATGCTG GCGCCGGCGCTGGCTGGTCTGCTGGGGCTGCGTCGTAAGCGCGTTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56052:321..518-

>mRNA_P-wetherbeei_contig56052.1.1 ID=mRNA_P-wetherbeei_contig56052.1.1|Name=mRNA_P-wetherbeei_contig56052.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=198bp|location=Sequence derived from alignment at P-wetherbeei_contig56052:321..518- (Phaeothamnion wetherbeei SAG_119_79)
TCGGCCGAAGACCGCTACTTCGCTGCAATCTTCGATGGCGGTATTGCTCG
TATCTCCATCACGAGTTTGAACGGTTCTGGTGATTGGGAAGTCGATCACC
TGCAGTACGGCATTGCGGCCGTGCCGGTGCCGGCTGCGGTATGGATGCTG
GCGCCGGCGCTGGCTGGTCTGCTGGGGCTGCGTCGTAAGCGCGTTTAG
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