mRNA_P-wetherbeei_contig5605.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5605.3.1
Unique NamemRNA_P-wetherbeei_contig5605.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5605.3.1 vs. uniprot
Match: A0A177R079_9PROT (CoA-binding protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A177R079_9PROT)

HSP 1 Score: 262 bits (669), Expect = 9.390e-88
Identity = 125/153 (81.70%), Postives = 142/153 (92.81%), Query Frame = 1
Query:   13 DINSLRRILQGNRTIAVVGLSANWFRPSYFAAKYMLEHGYRVIPVNPQYTEVLGQKCYKSLSEIPEKVDIVDCFQKSERIMPLAEEAIAIGAKVLWQQIGVTNVAAAEKARAAGLDAVMDRCVKIEHGRLFGGLNWVGVNTGVISAKRPRWIA 471
            DIN+LRRIL+  RT+AVVGLSA+WFRPSYFAAKYM EHGYRVIPVNP+YTE+LGQKCYKSL +IPEKVD+VD F+K++ + P+AEEAIAIGAKVLWQQ+GV N AAA KARAAGL+AVMDRCVKIEHGRLFGGLNWVGVNT VIS+KRPRW+A
Sbjct:    3 DINTLRRILRECRTLAVVGLSADWFRPSYFAAKYMQEHGYRVIPVNPKYTEILGQKCYKSLRDIPEKVDLVDVFRKTQDVPPIAEEAIAIGAKVLWQQLGVKNEAAAAKARAAGLEAVMDRCVKIEHGRLFGGLNWVGVNTRVISSKRPRWLA 155          
BLAST of mRNA_P-wetherbeei_contig5605.3.1 vs. uniprot
Match: A0A2V7JYL3_9BACT (CoA-binding protein n=6 Tax=Bacteria TaxID=2 RepID=A0A2V7JYL3_9BACT)

HSP 1 Score: 261 bits (668), Expect = 1.330e-87
Identity = 123/153 (80.39%), Postives = 142/153 (92.81%), Query Frame = 1
Query:   13 DINSLRRILQGNRTIAVVGLSANWFRPSYFAAKYMLEHGYRVIPVNPQYTEVLGQKCYKSLSEIPEKVDIVDCFQKSERIMPLAEEAIAIGAKVLWQQIGVTNVAAAEKARAAGLDAVMDRCVKIEHGRLFGGLNWVGVNTGVISAKRPRWIA 471
            DIN+LRR+L+ +R IAVVGLSA+W+RPSYFAAKYM EHGYRVIPVNP+Y E+LG+KCYKSL E+PEK+DIVD F+K++ +MP+AEEAIAIGAKVLWQQ+GV N AAA KARAAGLDAV+DRCVKIEHGRLFGGLNWVGVNT VISAKRPRW+A
Sbjct:    3 DINALRRLLRESRVIAVVGLSADWYRPSYFAAKYMQEHGYRVIPVNPKYGEILGEKCYKSLREVPEKIDIVDVFRKTQDVMPIAEEAIAIGAKVLWQQLGVKNEAAAAKARAAGLDAVVDRCVKIEHGRLFGGLNWVGVNTRVISAKRPRWLA 155          
BLAST of mRNA_P-wetherbeei_contig5605.3.1 vs. uniprot
Match: A0A536Y5A7_9PROT (CoA-binding protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536Y5A7_9PROT)

HSP 1 Score: 255 bits (652), Expect = 3.780e-85
Identity = 119/153 (77.78%), Postives = 138/153 (90.20%), Query Frame = 1
Query:   13 DINSLRRILQGNRTIAVVGLSANWFRPSYFAAKYMLEHGYRVIPVNPQYTEVLGQKCYKSLSEIPEKVDIVDCFQKSERIMPLAEEAIAIGAKVLWQQIGVTNVAAAEKARAAGLDAVMDRCVKIEHGRLFGGLNWVGVNTGVISAKRPRWIA 471
            DINSLRRIL+ + TIAVVGLSA+W+RPSYFAAKYM EHGYR++PVNP+Y E+LG+KCY SL E+PEK+DIVD F+K+  +MP+AE+AIAI AKVLWQQ+GV N AAA KA AAGLDAVMDRCVKIEHGRLFGGLNWVGVNT +ISAKRPRW+A
Sbjct:    4 DINSLRRILRESHTIAVVGLSADWYRPSYFAAKYMQEHGYRIVPVNPKYREILGEKCYPSLREVPEKIDIVDVFRKTADVMPIAEDAIAISAKVLWQQLGVKNEAAAAKAHAAGLDAVMDRCVKIEHGRLFGGLNWVGVNTHIISAKRPRWLA 156          
BLAST of mRNA_P-wetherbeei_contig5605.3.1 vs. uniprot
Match: A0A521XSV8_9PROT (CoA-binding protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521XSV8_9PROT)

HSP 1 Score: 254 bits (649), Expect = 1.080e-84
Identity = 121/153 (79.08%), Postives = 136/153 (88.89%), Query Frame = 1
Query:   13 DINSLRRILQGNRTIAVVGLSANWFRPSYFAAKYMLEHGYRVIPVNPQYTEVLGQKCYKSLSEIPEKVDIVDCFQKSERIMPLAEEAIAIGAKVLWQQIGVTNVAAAEKARAAGLDAVMDRCVKIEHGRLFGGLNWVGVNTGVISAKRPRWIA 471
            DI +LRRIL+ NR IAVVGLSANW+RPS+FAAKYM+EHGY +IPVNP Y EVLGQ+CY  L +IP KVDIVDCF+K+E IMP+AE+AIAIGAKVLWQQ+GV N AAA KARAAGLDAV DRCVKIEH RLFGGLNW GVNTGVISAKRPRW++
Sbjct:    4 DIPTLRRILRENRVIAVVGLSANWYRPSFFAAKYMMEHGYTIIPVNPAYAEVLGQQCYAGLRDIPVKVDIVDCFRKAEDIMPIAEDAIAIGAKVLWQQLGVKNEAAALKARAAGLDAVTDRCVKIEHARLFGGLNWAGVNTGVISAKRPRWLS 156          
BLAST of mRNA_P-wetherbeei_contig5605.3.1 vs. uniprot
Match: A0A1F3YK77_9PROT (CoA-binding protein n=2 Tax=Bacteria TaxID=2 RepID=A0A1F3YK77_9PROT)

HSP 1 Score: 254 bits (648), Expect = 1.540e-84
Identity = 122/153 (79.74%), Postives = 138/153 (90.20%), Query Frame = 1
Query:   13 DINSLRRILQGNRTIAVVGLSANWFRPSYFAAKYMLEHGYRVIPVNPQYTEVLGQKCYKSLSEIPEKVDIVDCFQKSERIMPLAEEAIAIGAKVLWQQIGVTNVAAAEKARAAGLDAVMDRCVKIEHGRLFGGLNWVGVNTGVISAKRPRWIA 471
            DIN+LRRIL+  R +A+VGLSA+W RPSYFAAKYMLEHGYRVIPVNPQY EVLGQKCY SL EIPEKVD+VD F+K+  +MP+AE+AIAIGA+VLWQQ+GV N AAA KA AAGL++VMDRCVKIEHGRLFGGLNWVGVNT VISAKRPRW+A
Sbjct:    4 DINTLRRILRECRVLAIVGLSASWHRPSYFAAKYMLEHGYRVIPVNPQYQEVLGQKCYASLREIPEKVDLVDVFRKTADVMPVAEDAIAIGARVLWQQLGVKNEAAAAKALAAGLESVMDRCVKIEHGRLFGGLNWVGVNTRVISAKRPRWLA 156          
BLAST of mRNA_P-wetherbeei_contig5605.3.1 vs. uniprot
Match: A0A521YQT5_9PROT (CoA-binding protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521YQT5_9PROT)

HSP 1 Score: 251 bits (642), Expect = 1.220e-83
Identity = 120/153 (78.43%), Postives = 135/153 (88.24%), Query Frame = 1
Query:   13 DINSLRRILQGNRTIAVVGLSANWFRPSYFAAKYMLEHGYRVIPVNPQYTEVLGQKCYKSLSEIPEKVDIVDCFQKSERIMPLAEEAIAIGAKVLWQQIGVTNVAAAEKARAAGLDAVMDRCVKIEHGRLFGGLNWVGVNTGVISAKRPRWIA 471
            DIN+LRRIL+ N  IAVVGLSA W RPSYFAAKYM EHGYRVIPVNP+Y  VLG+KCYK L +IPEKVDIVD F+K++ +MP+AEEAIAIGAKVLWQQ+GV N  AA KARAAGL+ V+DRCVKIEHGRLFGGLNWVGVNT V+SAKRPRW+A
Sbjct:    3 DINTLRRILKENHVIAVVGLSAEWHRPSYFAAKYMQEHGYRVIPVNPKYESVLGEKCYKRLRDIPEKVDIVDVFRKTQDVMPIAEEAIAIGAKVLWQQLGVRNEEAAAKARAAGLETVLDRCVKIEHGRLFGGLNWVGVNTRVLSAKRPRWLA 155          
BLAST of mRNA_P-wetherbeei_contig5605.3.1 vs. uniprot
Match: A0A536W4Z9_9PROT (CoA-binding protein n=9 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536W4Z9_9PROT)

HSP 1 Score: 250 bits (638), Expect = 5.140e-83
Identity = 119/152 (78.29%), Postives = 134/152 (88.16%), Query Frame = 1
Query:   13 DINSLRRILQGNRTIAVVGLSANWFRPSYFAAKYMLEHGYRVIPVNPQYTEVLGQKCYKSLSEIPEKVDIVDCFQKSERIMPLAEEAIAIGAKVLWQQIGVTNVAAAEKARAAGLDAVMDRCVKIEHGRLFGGLNWVGVNTGVISAKRPRWI 468
            DI  LRRIL+ ++ IAVVGLS +WFRPSYFAAKYMLEHGY VIPVNP Y  +LGQKCYKSL +IP KVDIVDCF+K+  IMP+AE+AIAIGAKVLWQQ+GVTNV AA KA AAGL+AVMDRC+KIEHGRLFGGLNW GVNT VISAKRP+W+
Sbjct:    4 DIPGLRRILKTSKVIAVVGLSGDWFRPSYFAAKYMLEHGYTVIPVNPGYDSILGQKCYKSLRDIPVKVDIVDCFRKTGEIMPIAEDAIAIGAKVLWQQLGVTNVEAARKAEAAGLEAVMDRCMKIEHGRLFGGLNWCGVNTRVISAKRPQWL 155          
BLAST of mRNA_P-wetherbeei_contig5605.3.1 vs. uniprot
Match: A0A1F4C6R9_9PROT (CoA-binding protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23 TaxID=1797499 RepID=A0A1F4C6R9_9PROT)

HSP 1 Score: 248 bits (634), Expect = 2.090e-82
Identity = 119/152 (78.29%), Postives = 131/152 (86.18%), Query Frame = 1
Query:   13 DINSLRRILQGNRTIAVVGLSANWFRPSYFAAKYMLEHGYRVIPVNPQYTEVLGQKCYKSLSEIPEKVDIVDCFQKSERIMPLAEEAIAIGAKVLWQQIGVTNVAAAEKARAAGLDAVMDRCVKIEHGRLFGGLNWVGVNTGVISAKRPRWI 468
            DI +LRRIL+ NR IAVVGLSANW+RPS+FAAKYM+E GY VIPVNP Y EVLGQKCY SL +IP KVDIVDCF+K+E IMP+A +AIAIGAKVLWQQ+GV N  AA KA  AGLD VMDRCVKIEH RLFGGLNW GVNTGVISAKRPRW+
Sbjct:    4 DIQTLRRILRENRVIAVVGLSANWYRPSFFAAKYMMERGYSVIPVNPAYKEVLGQKCYASLRDIPVKVDIVDCFRKTEDIMPIAGDAIAIGAKVLWQQLGVRNEEAARKAEGAGLDTVMDRCVKIEHARLFGGLNWAGVNTGVISAKRPRWL 155          
BLAST of mRNA_P-wetherbeei_contig5605.3.1 vs. uniprot
Match: A0A0S8F5W0_9GAMM (CoA-binding protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A0S8F5W0_9GAMM)

HSP 1 Score: 244 bits (622), Expect = 1.510e-80
Identity = 113/154 (73.38%), Postives = 135/154 (87.66%), Query Frame = 1
Query:    7 DTDINSLRRILQGNRTIAVVGLSANWFRPSYFAAKYMLEHGYRVIPVNPQYTEVLGQKCYKSLSEIPEKVDIVDCFQKSERIMPLAEEAIAIGAKVLWQQIGVTNVAAAEKARAAGLDAVMDRCVKIEHGRLFGGLNWVGVNTGVISAKRPRWI 468
            +TDIN+LRRIL+ ++T+A+VGLSANW+RPS+FAAKYM EHGYR+IPVNP Y EVLG+KCY SL +IPEKVD+VDCF+KSE I PLA++AI IGAKVLW Q+GV N  AA+ AR AGL+ V DRCVKIEHGRLFGGLNW GVNT VIS+KRP+W+
Sbjct:    4 NTDINTLRRILKQSKTLAIVGLSANWYRPSFFAAKYMQEHGYRIIPVNPAYEEVLGEKCYPSLKDIPEKVDMVDCFRKSEDIEPLAKQAIEIGAKVLWLQLGVVNEKAAKMAREAGLEVVQDRCVKIEHGRLFGGLNWAGVNTKVISSKRPQWL 157          
BLAST of mRNA_P-wetherbeei_contig5605.3.1 vs. uniprot
Match: A0A5C7EI80_9PROT (CoA-binding protein n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A5C7EI80_9PROT)

HSP 1 Score: 241 bits (614), Expect = 2.500e-79
Identity = 116/154 (75.32%), Postives = 131/154 (85.06%), Query Frame = 1
Query:    7 DTDINSLRRILQGNRTIAVVGLSANWFRPSYFAAKYMLEHGYRVIPVNPQYTEVLGQKCYKSLSEIPEKVDIVDCFQKSERIMPLAEEAIAIGAKVLWQQIGVTNVAAAEKARAAGLDAVMDRCVKIEHGRLFGGLNWVGVNTGVISAKRPRWI 468
            + DI +LRRIL  NR IAVVG+SA+W+RPS+FAAKYML+HGYRVIPVNP Y EVLGQKCY  L +I EKVDIVDCF+KS  I P+ ++AIAIGAKVLW QIGV N  AAEKA AAGL+ VMDRCVKIEH RLFGGLNW+GVNT VISAKRPRW+
Sbjct:    4 EPDIPTLRRILGENRVIAVVGISAHWYRPSHFAAKYMLDHGYRVIPVNPSYEEVLGQKCYPCLRDIAEKVDIVDCFRKSADIPPIVDDAIAIGAKVLWMQIGVINHEAAEKALAAGLEVVMDRCVKIEHARLFGGLNWIGVNTRVISAKRPRWL 157          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5605.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A177R079_9PROT9.390e-8881.70CoA-binding protein n=2 Tax=unclassified Betaprote... [more]
A0A2V7JYL3_9BACT1.330e-8780.39CoA-binding protein n=6 Tax=Bacteria TaxID=2 RepID... [more]
A0A536Y5A7_9PROT3.780e-8577.78CoA-binding protein n=2 Tax=Betaproteobacteria bac... [more]
A0A521XSV8_9PROT1.080e-8479.08CoA-binding protein n=1 Tax=Betaproteobacteria bac... [more]
A0A1F3YK77_9PROT1.540e-8479.74CoA-binding protein n=2 Tax=Bacteria TaxID=2 RepID... [more]
A0A521YQT5_9PROT1.220e-8378.43CoA-binding protein n=2 Tax=unclassified Betaprote... [more]
A0A536W4Z9_9PROT5.140e-8378.29CoA-binding protein n=9 Tax=Betaproteobacteria bac... [more]
A0A1F4C6R9_9PROT2.090e-8278.29CoA-binding protein n=1 Tax=Betaproteobacteria bac... [more]
A0A0S8F5W0_9GAMM1.510e-8073.38CoA-binding protein n=2 Tax=Gammaproteobacteria Ta... [more]
A0A5C7EI80_9PROT2.500e-7975.32CoA-binding protein n=3 Tax=Proteobacteria TaxID=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5605contigP-wetherbeei_contig5605:2785..3261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123367.C666_14400
PFAMsCoA_binding_2
Model size477
Max annot lvl206389|Rhodocyclales
KEGG koko:K06929
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.1e-72
EggNOG OGsCOG1832@1|root,COG1832@2|Bacteria,1N03D@1224|Proteobacteria,2VU9G@28216|Betaproteobacteria,2KWFV@206389|Rhodocyclales
DescriptionCoA-binding protein
Cds size477
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186834.2214184-CDS-P-wetherbeei_contig5605:2784..32611683186834.2214184-CDS-P-wetherbeei_contig5605:2784..3261Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5605 2785..3261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5605.3.1prot_P-wetherbeei_contig5605.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5605 2785..3261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5605.3.1

>prot_P-wetherbeei_contig5605.3.1 ID=prot_P-wetherbeei_contig5605.3.1|Name=mRNA_P-wetherbeei_contig5605.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
MPDTDINSLRRILQGNRTIAVVGLSANWFRPSYFAAKYMLEHGYRVIPVN
PQYTEVLGQKCYKSLSEIPEKVDIVDCFQKSERIMPLAEEAIAIGAKVLW
QQIGVTNVAAAEKARAAGLDAVMDRCVKIEHGRLFGGLNWVGVNTGVISA
KRPRWIAT*
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mRNA from alignment at P-wetherbeei_contig5605:2785..3261+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5605.3.1 ID=mRNA_P-wetherbeei_contig5605.3.1|Name=mRNA_P-wetherbeei_contig5605.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig5605:2785..3261+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGACACCGACATCAACTCGCTACGCAGAATCCTCCAAGGCAACCG GACGATCGCGGTGGTGGGGCTGTCGGCGAACTGGTTCCGGCCGAGCTACT TCGCGGCCAAGTACATGCTCGAGCACGGCTACCGCGTCATCCCGGTCAAC CCGCAGTACACCGAAGTGCTGGGGCAGAAGTGCTACAAGTCGCTGTCCGA GATCCCTGAAAAGGTCGACATCGTCGACTGCTTCCAGAAGAGCGAACGGA TCATGCCGCTGGCCGAGGAAGCCATCGCGATCGGGGCGAAGGTGCTGTGG CAGCAGATCGGCGTGACCAACGTGGCTGCGGCCGAAAAAGCCCGCGCCGC CGGGCTCGACGCCGTGATGGATCGGTGCGTGAAAATAGAGCACGGGCGCC TGTTCGGCGGCCTCAACTGGGTAGGGGTGAACACCGGCGTGATCTCCGCG AAGCGGCCGCGCTGGATAGCAACCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5605:2785..3261+

>mRNA_P-wetherbeei_contig5605.3.1 ID=mRNA_P-wetherbeei_contig5605.3.1|Name=mRNA_P-wetherbeei_contig5605.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig5605:2785..3261+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGACACCGACATCAACTCGCTACGCAGAATCCTCCAAGGCAACCG
GACGATCGCGGTGGTGGGGCTGTCGGCGAACTGGTTCCGGCCGAGCTACT
TCGCGGCCAAGTACATGCTCGAGCACGGCTACCGCGTCATCCCGGTCAAC
CCGCAGTACACCGAAGTGCTGGGGCAGAAGTGCTACAAGTCGCTGTCCGA
GATCCCTGAAAAGGTCGACATCGTCGACTGCTTCCAGAAGAGCGAACGGA
TCATGCCGCTGGCCGAGGAAGCCATCGCGATCGGGGCGAAGGTGCTGTGG
CAGCAGATCGGCGTGACCAACGTGGCTGCGGCCGAAAAAGCCCGCGCCGC
CGGGCTCGACGCCGTGATGGATCGGTGCGTGAAAATAGAGCACGGGCGCC
TGTTCGGCGGCCTCAACTGGGTAGGGGTGAACACCGGCGTGATCTCCGCG
AAGCGGCCGCGCTGGATAGCAACCTGA
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