mRNA_P-wetherbeei_contig56021.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig56021.1.1
Unique NamemRNA_P-wetherbeei_contig56021.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig56021.1.1 vs. uniprot
Match: A0A2M6UDT0_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium nitroreducens TaxID=709803 RepID=A0A2M6UDT0_9BRAD)

HSP 1 Score: 131 bits (329), Expect = 5.180e-36
Identity = 68/134 (50.75%), Postives = 89/134 (66.42%), Query Frame = 1 
Query:    4 MNLSTPNRMIWIYFAALRRRVRELQKISDADLQKIEIAFCIMLSVIVVETFLNVFFRVVVSEKEFIQCSSAILNDIEKRKGLAHKLKTWPQTVFGKQLDGTATALLDFEKIRTRRNSLMHFTSSQEILALEGIQ 405
            M  STPNRM+W+YF+AL+RRV+ +Q   +   Q  +IA C+ML+V VVETFLN+FFRV VSE  F Q    I  D+E+R  L HKL+ WP+ VFG+ LD     L  F  ++ +RN LMHFTS+ E  A +G Q
Sbjct:    1 MGYSTPNRMVWLYFSALQRRVQAIQATGNGAAQA-DIALCLMLTVAVVETFLNLFFRVAVSEPAFAQHKGRITRDLERRASLDHKLRRWPEAVFGRPLDPDDPILRSFFALKEKRNRLMHFTSTHETFAGDGFQ 133
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BLAST of mRNA_P-wetherbeei_contig56021.1.1 vs. uniprot
Match: UPI0011AFCF44 (hypothetical protein n=1 Tax=Macromonas bipunctata TaxID=183670 RepID=UPI0011AFCF44)

HSP 1 Score: 100 bits (249), Expect = 6.360e-24
Identity = 48/130 (36.92%), Postives = 83/130 (63.85%), Query Frame = 1 
Query:   13 STPNRMIWIYFAALRRRVRELQKISDADLQKIEIAFCIMLSVIVVETFLNVFFRVVVSEKEFIQCSSAILNDIEKRKGLAHKLKTWPQTVFGKQLDGTATALLDFEKIRTRRNSLMHFTSSQEILALEGI 402
            S+PNRM+W YF ALRR  R +Q+  +A+  + + A C++L+V  VE FLN++FR++V E+ F      I+ D++ + G+  K++ WP  VFG +++  +     F +++ +RN L HF+SS E + + G+
Sbjct:    6 SSPNRMVWEYFEALRRLCRRVQECKNANEIRQDAALCVILAVNGVEVFLNIYFRILVPERMFESSYERIVQDLKSKVGIDIKIRDWPHVVFGSKINFGSGIGQKFTELKNKRNKLTHFSSSHETIKIPGV 135
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BLAST of mRNA_P-wetherbeei_contig56021.1.1 vs. uniprot
Match: A0A3S0FSX8_9RHOO (Uncharacterized protein n=1 Tax=Rhodocyclaceae bacterium TaxID=1898103 RepID=A0A3S0FSX8_9RHOO)

HSP 1 Score: 68.9 bits (167), Expect = 6.080e-12
Identity = 40/113 (35.40%), Postives = 64/113 (56.64%), Query Frame = 1 
Query:   64 VRELQKISDADLQKIEIAFCIMLSVIVVETFLNVFFRVVVSEKEFIQCSSAILNDIEKRKGLAHKLKTWPQTVFGKQLDGTATALLDFEKIRTRRNSLMHFTSSQEILALEGI 402
            ++  ++    +L +   A  ++++V V E FLN++FRV V EK       ++L D+  R  L HKLK WP       LD  + A  +F K+++ RNS++HFTSS E + L G+
Sbjct:    1 MQNAKEAQGPELARQATALAVVMAVTVGEVFLNLWFRVRVEEKAVPGHRDSLLKDLNVRIPLHHKLKHWPSRYLSAPLDLNSGAGGEFVKLKSLRNSIVHFTSSHESIELAGV 113
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56021.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2M6UDT0_9BRAD5.180e-3650.75Uncharacterized protein n=1 Tax=Bradyrhizobium nit... [more]
UPI0011AFCF446.360e-2436.92hypothetical protein n=1 Tax=Macromonas bipunctata... [more]
A0A3S0FSX8_9RHOO6.080e-1235.40Uncharacterized protein n=1 Tax=Rhodocyclaceae bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig56021contigP-wetherbeei_contig56021:115..519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size405
Hectar predicted targeting categoryother localisation
Exons1
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186833.9020975-UTR-P-wetherbeei_contig56021:114..1171683186833.9020975-UTR-P-wetherbeei_contig56021:114..117Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig56021 115..117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186833.9103816-CDS-P-wetherbeei_contig56021:117..5191683186833.9103816-CDS-P-wetherbeei_contig56021:117..519Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig56021 118..519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig56021.1.1prot_P-wetherbeei_contig56021.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig56021 118..519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig56021.1.1

>prot_P-wetherbeei_contig56021.1.1 ID=prot_P-wetherbeei_contig56021.1.1|Name=mRNA_P-wetherbeei_contig56021.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
MNLSTPNRMIWIYFAALRRRVRELQKISDADLQKIEIAFCIMLSVIVVET
FLNVFFRVVVSEKEFIQCSSAILNDIEKRKGLAHKLKTWPQTVFGKQLDG
TATALLDFEKIRTRRNSLMHFTSSQEILALEGIQ
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mRNA from alignment at P-wetherbeei_contig56021:115..519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig56021.1.1 ID=mRNA_P-wetherbeei_contig56021.1.1|Name=mRNA_P-wetherbeei_contig56021.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig56021:115..519+ (Phaeothamnion wetherbeei SAG_119_79)
GACATGAATTTGTCTACACCCAACAGAATGATTTGGATTTACTTCGCCGC
TCTCCGCCGTCGTGTCCGCGAACTGCAGAAAATATCCGACGCTGACTTGC
AGAAGATCGAAATTGCCTTTTGCATAATGCTTTCAGTAATCGTAGTTGAA
ACGTTCCTTAATGTTTTCTTCCGAGTGGTTGTTAGCGAAAAAGAATTCAT
CCAGTGCAGTTCTGCTATTCTAAACGATATAGAAAAACGAAAAGGTCTTG
CTCACAAATTAAAGACTTGGCCCCAGACAGTTTTTGGAAAACAACTAGAT
GGAACAGCAACGGCTCTACTCGATTTCGAAAAAATTCGGACTCGCCGCAA
TAGTTTAATGCACTTCACAAGTTCTCAAGAGATATTGGCGCTTGAAGGTA
TTCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig56021:115..519+

>mRNA_P-wetherbeei_contig56021.1.1 ID=mRNA_P-wetherbeei_contig56021.1.1|Name=mRNA_P-wetherbeei_contig56021.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig56021:115..519+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAATTTGTCTACACCCAACAGAATGATTTGGATTTACTTCGCCGCTCT
CCGCCGTCGTGTCCGCGAACTGCAGAAAATATCCGACGCTGACTTGCAGA
AGATCGAAATTGCCTTTTGCATAATGCTTTCAGTAATCGTAGTTGAAACG
TTCCTTAATGTTTTCTTCCGAGTGGTTGTTAGCGAAAAAGAATTCATCCA
GTGCAGTTCTGCTATTCTAAACGATATAGAAAAACGAAAAGGTCTTGCTC
ACAAATTAAAGACTTGGCCCCAGACAGTTTTTGGAAAACAACTAGATGGA
ACAGCAACGGCTCTACTCGATTTCGAAAAAATTCGGACTCGCCGCAATAG
TTTAATGCACTTCACAAGTTCTCAAGAGATATTGGCGCTTGAAGGTATTC
AA
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