mRNA_P-wetherbeei_contig56012.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: UPI000930F9E4 (OmpA family protein n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI000930F9E4) HSP 1 Score: 159 bits (402), Expect = 2.780e-44 Identity = 90/155 (58.06%), Postives = 111/155 (71.61%), Query Frame = 1
Query: 19 MLRRVALVLFSLLVLGVAAIFAAGHLGINLPWEIAAVDHESPSTNRDDAKSPDA------AAEKALRETTAALENAPGAEPPSGSVVLDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKLTYQVSRAAP 465
MLRRVA++L L + G A+FAA HLGI LPW+ AA D E PS +R+ + + A AAEKA+ +TTAAL A GSV +DISRISPDGTSV AG A+P++YVTVLE+GKPAGT KTDS G WSL+TE++F S DPKL+Y+V R P
Sbjct: 1 MLRRVAVLLILLAISG-GALFAARHLGIPLPWDFAATDPEPPSKDREASPAKGAEEPAKSAAEKAIEDTTAALAPQEPAPAQPGSVSIDISRISPDGTSVIAGHAEPDSYVTVLEEGKPAGTAKTDSGGNWSLATEHRFASTDPKLSYEVRRTPP 154
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: UPI000A03DBFC (OmpA family protein n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI000A03DBFC) HSP 1 Score: 152 bits (383), Expect = 1.810e-41 Identity = 86/168 (51.19%), Postives = 110/168 (65.48%), Query Frame = 1
Query: 1 TVAEVSMLRRVALVLFSLLVLGVAAIFAAGHLGINLPWEIAAVDHESPSTNRDDAKSPDA-------------AAEKALRETTAALENAPGAEPPSGSVVLDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKLTYQVSRAAP 465
T EV+MLRRVALVL L G+AAIFAAG G+ LPW+IA+ P+ S D +AE + +T AAL + +P SG+V +DISRISPDG+SVFAGRA+P+TYVTV+E+GKPAGTVK+D GEWSL T+++F S DP LT+ S+ P
Sbjct: 2 TQVEVAMLRRVALVLLLLAASGLAAIFAAGRFGVTLPWDIASSTAPDPAQKTAAPVSKDXXXXXXXXXXXAAKSAETVIDQTVAALGKSDEPKPASGNVEIDISRISPDGSSVFAGRAEPDTYVTVMENGKPAGTVKSDEQGEWSLVTDHRFASTDPTLTFSTSKTPP 169
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: V5SH05_9HYPH (OmpA-like domain-containing protein n=1 Tax=Hyphomicrobium nitrativorans NL23 TaxID=1029756 RepID=V5SH05_9HYPH) HSP 1 Score: 144 bits (362), Expect = 5.650e-38 Identity = 82/159 (51.57%), Postives = 103/159 (64.78%), Query Frame = 1
Query: 19 MLRRVALVLFSLLVLGVAAIFAAGHLGINLPWEIAAVDH-ESPSTNRDDAKSP-------DAAAEKALRETTAAL--ENAPGAEPPSGSVVLDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKLTYQVSRAAP 465
MLRR ALVL LLV A IFAA LG++LPW +A+ E PST + ++P A+AE+A+ +T AAL + A +PP G V LDISRISPDG SVFAGRA+P Y+TV DGK AGTV+ D G WSLSTE+KF DP +T++ + P
Sbjct: 1 MLRRTALVLLGLLVTAAAGIFAADRLGMDLPWTVASTQAPEQPSTENEAPRAPGEAPSKASASAERAIEDTVAALAGDTAADTQPPPGDVALDISRISPDGPSVFAGRAEPRAYITVYADGKSAGTVQADDGGSWSLSTEHKFAGADPTITFESAPTPP 159
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: A0A6I3KLL9_9HYPH (OmpA family protein n=1 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KLL9_9HYPH) HSP 1 Score: 78.6 bits (192), Expect = 3.010e-14 Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 1
Query: 145 STNRDDAKSPDAAAEKALRETTAALENAPGAEPPSGSV-VLDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKL 438
+T ++DAK+P E E A + A+P G DI+RI P+GTSVFAGRA+P+++VT+ DGK GT + D NGEW+ +TE K + D KL
Sbjct: 38 TTKQEDAKAP---GESPKGEIEAMQDALAPAKPGDGQAPAFDIARIDPNGTSVFAGRAEPKSFVTITADGKEIGTAEADENGEWTFTTEAKIPNPDAKL 133
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: UPI00092FE092 (OmpA family protein n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI00092FE092) HSP 1 Score: 77.4 bits (189), Expect = 8.300e-14 Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 1
Query: 136 ESPSTNRDDAKSPDAAAEKALRETTAALENAPGAEPPSGSVVLDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKL 438
E P+T D A A AL + ALE P P GS DI+RI P+GTSVFAGR +P + VT+ DGK GT + D NGEW+ +TE + ++ D KL
Sbjct: 40 EEPATKADTANRQPADDIDALHK---ALERNP--TPSDGSASFDIARIDPEGTSVFAGRGEPNSLVTITVDGKEIGTAQVDENGEWTFTTEGRISNPDGKL 135
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: A0A2W4KSQ5_9PROT (OmpA-like domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4KSQ5_9PROT) HSP 1 Score: 73.2 bits (178), Expect = 2.120e-12 Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1
Query: 262 LDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKL 438
D++RISP+G SVFAG+A P + VTV DGKP G+ K D GEW+L TE TS DP L
Sbjct: 77 FDVARISPNGPSVFAGQAPPNSLVTVTVDGKPVGSTKVDERGEWTLVTEQPITSPDPVL 135
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: A0A6I0EIY7_HYPSQ (OmpA family protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EIY7_HYPSQ) HSP 1 Score: 71.2 bits (173), Expect = 1.140e-11 Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 1
Query: 136 ESPSTNRDDAKSPDAAAEKALRETTAALENAPGAEPPSGSVVLDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKL 438
+SP+ A + D A E L+E + + GA P DI+RI P+GTSVFAGRA+P + VT+ DGK GT + D NGEW+ +T+ K + + KL
Sbjct: 39 QSPTKAAKSATAQDEAQE--LQEALSPPSDTQGAAPS-----FDIARIDPNGTSVFAGRAEPRSVVTITADGKEIGTAQADENGEWTFTTDAKIPNAEAKL 132
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: A0A2E5PDE6_9PROT (Peptidoglycan-binding protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5PDE6_9PROT) HSP 1 Score: 66.6 bits (161), Expect = 5.660e-10 Identity = 39/90 (43.33%), Postives = 51/90 (56.67%), Query Frame = 1
Query: 187 EKALRETTAALENAPGAE-----PPSGSVVLDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKLT 441
E+AL + AALE + P S D+ RISP+G +V AGRA+P + +TVLEDG P GTV+ D GEW L S D +L+
Sbjct: 68 EQALDSSAAALEKTKAKQVVETPPLVSSPSFDVVRISPNGRAVIAGRAEPGSQITVLEDGIPLGTVEVDRRGEWVLVPNSNLKSGDRQLS 157
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: A0A1G8FML4_9PROT (LysM domain-containing protein n=1 Tax=Roseospirillum parvum TaxID=83401 RepID=A0A1G8FML4_9PROT) HSP 1 Score: 55.8 bits (133), Expect = 3.270e-6 Identity = 28/74 (37.84%), Postives = 40/74 (54.05%), Query Frame = 1
Query: 244 PSGSVVLDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKLTYQVSRAAP 465
P G+ D++R+ G V AGRA P++ VTV DG+P GT +TD+ GE+ + +LT AAP
Sbjct: 72 PPGTPSFDVARVDDQGNLVVAGRAAPDSEVTVSIDGEPKGTARTDARGEFVFLPDQPLPPGPHQLTLSARPAAP 145
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Match: A0A124II48_9PROT (OmpA-like domain-containing protein n=1 Tax=Alphaproteobacteria bacterium BRH_c36 TaxID=1734406 RepID=A0A124II48_9PROT) HSP 1 Score: 54.7 bits (130), Expect = 8.230e-6 Identity = 26/66 (39.39%), Postives = 36/66 (54.55%), Query Frame = 1
Query: 262 LDISRISPDGTSVFAGRADPETYVTVLEDGKPAGTVKTDSNGEWSLSTEYKFTSNDPKLTYQVSRA 459
D++R+SPDG SVFAGRA P V ++ GT DS G W+L TE + +L + + A
Sbjct: 89 FDVARVSPDGVSVFAGRARPFERVNIIVGDLVVGTASADSQGNWTLVTEERIPDPSAELHLETATA 154 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig56012.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig56012.1.1 >prot_P-wetherbeei_contig56012.1.1 ID=prot_P-wetherbeei_contig56012.1.1|Name=mRNA_P-wetherbeei_contig56012.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=149bp MLRRVALVLFSLLVLGVAAIFAAGHLGINLPWEIAAVDHESPSTNRDDAKback to top mRNA from alignment at P-wetherbeei_contig56012:2..466- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig56012.1.1 ID=mRNA_P-wetherbeei_contig56012.1.1|Name=mRNA_P-wetherbeei_contig56012.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig56012:2..466- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig56012:2..466- >mRNA_P-wetherbeei_contig56012.1.1 ID=mRNA_P-wetherbeei_contig56012.1.1|Name=mRNA_P-wetherbeei_contig56012.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig56012:2..466- (Phaeothamnion wetherbeei SAG_119_79)back to top |