mRNA_P-wetherbeei_contig560.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig560.5.1
Unique NamemRNA_P-wetherbeei_contig560.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig560.5.1 vs. uniprot
Match: A0A7S2WH42_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WH42_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 5.960e-17
Identity = 52/125 (41.60%), Postives = 68/125 (54.40%), Query Frame = 1
Query:    1 VLAVWLPLSMGFDVLFVDDDLVWW----RSIEHLLATGDAADADIVMQDDGSRRHDFAPGFGNTGKGSKLPVCLYLVRHNPRSLYFMRTMLQSYDSIVNRATHQGVFDTLLDEHVVNTGLKSVTL 363
            VL V+LP+ +GF+VLF D DLVW     R   H  A   + D D+   DDGSR   F+P F NTG         Y +R+N R+ YFM++ML S D I+   +HQ     LL +H    GL+  TL
Sbjct:  168 VLCVYLPVDLGFNVLFQDADLVWLQDPLRQYFHKPAV--SGDFDMYFMDDGSRSTRFSPFFSNTG--------FYYIRNNERTKYFMQSMLYSSDLIIEWRSHQSALVQLLADHASTFGLRVKTL 282          
BLAST of mRNA_P-wetherbeei_contig560.5.1 vs. uniprot
Match: A0A7S2WG47_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WG47_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 8.980e-17
Identity = 52/125 (41.60%), Postives = 68/125 (54.40%), Query Frame = 1
Query:    1 VLAVWLPLSMGFDVLFVDDDLVWW----RSIEHLLATGDAADADIVMQDDGSRRHDFAPGFGNTGKGSKLPVCLYLVRHNPRSLYFMRTMLQSYDSIVNRATHQGVFDTLLDEHVVNTGLKSVTL 363
            VL V+LP+ +GF+VLF D DLVW     R   H  A   + D D+   DDGSR   F+P F NTG         Y +R+N R+ YFM++ML S D I+   +HQ     LL +H    GL+  TL
Sbjct:  419 VLCVYLPVDLGFNVLFQDADLVWLQDPLRQYFHKPAV--SGDFDMYFMDDGSRSTRFSPFFSNTG--------FYYIRNNERTKYFMQSMLYSSDLIIEWRSHQSALVQLLADHASTFGLRVKTL 533          
BLAST of mRNA_P-wetherbeei_contig560.5.1 vs. uniprot
Match: A0A7S0BYX8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BYX8_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 5.850e-16
Identity = 50/124 (40.32%), Postives = 66/124 (53.23%), Query Frame = 1
Query:    1 VLAVWLPLSMGFDVLFVDDDLVWWRSIEHLLATGDAA-DADIVMQDDGSRRHDFAPGFGNTGKGSKLPVCLYLVRHNPRSLYFMRTMLQSYDSIVNRATHQGVFDTLLDEHVVNTGLKSVTLHE 369
            VLAV L   +G+DVLF+D DLVW++    L    ++  + D++ QDDGSR   +AP   NTG         Y VRHNPR+ Y    +L S D I    +HQ     LL EH    GLK  T+ +
Sbjct:  164 VLAVQLINHIGYDVLFMDVDLVWYKDPLELFHNDESLQEFDLIFQDDGSRSIRYAPFCANTG--------FYFVRHNPRTRYLFTALLYSGDVIKAAKSHQQALSALLSEHSSLYGLKVKTIED 279          
BLAST of mRNA_P-wetherbeei_contig560.5.1 vs. uniprot
Match: A0A6U5L4L7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5L4L7_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.130e-13
Identity = 43/119 (36.13%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    1 VLAVWLPLSMGFDVLFVDDDLVWWRSIEHLL--ATGDAADADIVMQDDGSRRHDFAPGFGNTGKGSKLPVCLYLVRHNPRSLYFMRTMLQSYDSIVNRATHQGVFDTLLDEHVVNTGLK 351
            VL+V +   +G+D+LF D D+VW++    L    + D A+ DI+ QDDG+R   +AP   N+G         Y VRHN R++Y   +++   D I+   +HQ V  +LL EH    GL+
Sbjct:  426 VLSVQMVNFLGYDLLFQDVDMVWYKDPLDLFHDKSNDLAEYDILFQDDGARSQRYAPYSANSG--------FYYVRHNARTVYLFTSLMYHGDMIIQSGSHQQVLISLLTEHASLFGLR 536          
BLAST of mRNA_P-wetherbeei_contig560.5.1 vs. uniprot
Match: A0A8J2WSU3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSU3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.750e-13
Identity = 41/107 (38.32%), Postives = 56/107 (52.34%), Query Frame = 1
Query:    7 AVWLPLSMGFDVLFVDDDLVWWRSIEHLLATGDAADADIVMQDDGSRRHDFAPGFGNTGKGSKLPVCLYLVRHNPRSLYFMRTMLQSYDSIVNRATHQGVFDTLLDE 327
             V+L  ++G+D+LF D DL WWR      AT    D D    DDG+R   FAP + NTG         YL+RHNPR+     T++  YD ++   +HQ V   +L E
Sbjct:  304 CVYLVNALGYDLLFQDADLYWWREPWSFFAT--RPDIDTFWMDDGARTSRFAPLYPNTG--------YYLIRHNPRTALLCETLVGMYDVVLAWQSHQAVVSQVLGE 400          
BLAST of mRNA_P-wetherbeei_contig560.5.1 vs. uniprot
Match: A0A7R9WVE0_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WVE0_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.450e-13
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 1
Query:    1 VLAVWLPLSMGFDVLFVDDDLVWWRS-IEHLLATGDAADADIVMQDDGSRRHDFAPGFGNTGKGSKLPVCLYLVRHNPRSLYFMRTMLQSYDSIVNRATHQGVFDTLLDEHVVNTGLK 351
            V  V +   +G+DVLF D DLVW+++ +E+     +  D DI  QDDG+    +AP   NTG         Y VR+N R+ YF  ++L + D I++  +HQ     LL+EH    GL+
Sbjct:    7 VYCVQMVNMLGYDVLFQDVDLVWYKNPLEYFYNHDNYPDFDIYFQDDGNHALFYAPYSANTG--------FYYVRYNDRTQYFFNSLLLAGDLILSTHSHQNALIALLNEHASMYGLR 116          
BLAST of mRNA_P-wetherbeei_contig560.5.1 vs. uniprot
Match: A0A1E7EJP1_9STRA (Nucleotid_trans domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EJP1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.500e-12
Identity = 42/123 (34.15%), Postives = 65/123 (52.85%), Query Frame = 1
Query:    1 VLAVWLPLSMGFDVLFVDDDLVWWRSIEHLLATGDAADADIVMQDDGSRRHDFAPGFGNTGKGSKLPVCLYLVRHNPRSLYFMRTMLQSYDSIVNRATHQGVFDTLLDEHVVNTGLKSVTLHE 369
            V  V L +S+G+DVLF D D++W ++    L T ++ + D++ QDDGSR+  + P   NTG         Y VR+ P ++YF  ++L+  D I    +HQ     LL E     GL+    H+
Sbjct:  276 VYCVHLVMSLGYDVLFQDVDVIWNQNPLEYLTTKESKEWDMMFQDDGSRQARYNPYSPNTG--------FYFVRNTPLTMYFFGSLLRMGDLISATKSHQAALSALLAEFAGWKGLRVKVWHK 390          
BLAST of mRNA_P-wetherbeei_contig560.5.1 vs. uniprot
Match: A0A1Z5KS91_FISSO (Nucleotid_trans domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KS91_FISSO)

HSP 1 Score: 70.9 bits (172), Expect = 8.600e-12
Identity = 46/128 (35.94%), Postives = 63/128 (49.22%), Query Frame = 1
Query:    1 VLAVWLPLSMGFDVLFVDDDLVWWRS-IEHLLATG--DAADADIVMQDDGSRRHDFAPGFGNTGKGSKLPVCLYLVRHNPRSLYFMRTMLQSYDSIVNRATHQGVFDTLLDEHVVNTGLKSVTLHEDD 375
            V  V L   +G+D+LF D D+VW+++ +E+  A       D D+  QDDG+R   +AP   NTG         Y VRHN R+ Y     L+  D I    +HQ    TLL +   + GLK   L  DD
Sbjct:  348 VYCVQLINMLGYDLLFQDVDIVWYKNPLEYFHADNIPTIGDFDLYFQDDGARSSRYAPYSPNTG--------FYFVRHNARTEYLFSVFLRMGDVIQQSGSHQSALTTLLADFASDRGLKVKVLGRDD 467          
BLAST of mRNA_P-wetherbeei_contig560.5.1 vs. uniprot
Match: A0A7S4AKP5_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AKP5_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 8.630e-12
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 1
Query:    1 VLAVWLPLSMGFDVLFVDDDLVWWRSIEHLLATGDAADADIVMQDDGSRRHDFAPGFGNTGKGSKLPVCLYLVRHNPRSLYFMRTMLQSYDSIVNRATHQGVFDTLLDEHVVNTGLK 351
            V  V L +S+G+DVLF D D+VW  +    L T ++ + D++ QDDGSR+  + P   NTG         Y VR+N  + YF  ++++  D +    +HQ     L+ E V   GL+
Sbjct:  376 VYCVHLIISLGYDVLFQDVDVVWHENPLEYLETEESKEWDMIFQDDGSRQVRYQPYSPNTG--------FYFVRNNELTTYFFNSLVKMGDLVTKSKSHQAALTALMAEFVSWKGLR 484          
BLAST of mRNA_P-wetherbeei_contig560.5.1 vs. uniprot
Match: A0A7S0CD54_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CD54_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 9.800e-12
Identity = 42/122 (34.43%), Postives = 66/122 (54.10%), Query Frame = 1
Query:    1 VLAVWLPLSMGFDVLFVDDDLVWWRSIEHLLATGDA-ADADIVMQDDGSRRHDFAPGFGNTGKGSKLPVCLYLVRHNPRSLYFMRTMLQSYDSIVNRATHQGVFDTLLDEHVVNTGLKSVTL 363
            V++V L   +G+D+LF+D D+VW++   +   + ++ A  DI+ QDDG+R   +AP   N+G         Y VRHN R+ +    +L S + I+   +HQ      L+EH    GLK  TL
Sbjct:  147 VISVALINLLGYDLLFMDVDIVWYKEPLNFFHSDESVAQYDIMFQDDGARSIRYAPYSANSG--------FYYVRHNERTTHLFTRLLNSGELIIESKSHQQALGIFLEEHSSLYGLKVKTL 260          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig560.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2WH42_9STRA5.960e-1741.60Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2WG47_9STRA8.980e-1741.60Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0BYX8_9STRA5.850e-1640.32Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A6U5L4L7_9STRA1.130e-1336.13Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A8J2WSU3_9STRA3.750e-1338.32Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9WVE0_9STRA4.450e-1336.44Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A1E7EJP1_9STRA4.500e-1234.15Nucleotid_trans domain-containing protein n=1 Tax=... [more]
A0A1Z5KS91_FISSO8.600e-1235.94Nucleotid_trans domain-containing protein n=2 Tax=... [more]
A0A7S4AKP5_9STRA8.630e-1234.19Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S0CD54_9STRA9.800e-1234.43Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig560contigP-wetherbeei_contig560:8379..9158 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr49150
PFAMsNucleotid_trans
Model size375
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.64e-12
EggNOG OGs2CPXH@1|root,2R34C@2759|Eukaryota,2XEBI@2836|Bacillariophyta
DescriptionNucleotide-diphospho-sugar transferase
Cds size348
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186833.3682685-CDS-P-wetherbeei_contig560:8378..85481683186833.3682685-CDS-P-wetherbeei_contig560:8378..8548Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig560 8379..8548 -
1683186833.377331-CDS-P-wetherbeei_contig560:8953..91311683186833.377331-CDS-P-wetherbeei_contig560:8953..9131Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig560 8954..9131 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186833.3893683-UTR-P-wetherbeei_contig560:9131..91581683186833.3893683-UTR-P-wetherbeei_contig560:9131..9158Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig560 9132..9158 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig560.5.1prot_P-wetherbeei_contig560.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig560 8379..9131 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig560.5.1

>prot_P-wetherbeei_contig560.5.1 ID=prot_P-wetherbeei_contig560.5.1|Name=mRNA_P-wetherbeei_contig560.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=116bp
MGFDVLFVDDDLVWWRSIEHLLATGDAADADIVMQDDGSRRHDFAPGFGN
TGKGSKLPVCLYLVRHNPRSLYFMRTMLQSYDSIVNRATHQGVFDTLLDE
HVVNTGLKSVTLHEDD
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mRNA from alignment at P-wetherbeei_contig560:8379..9158-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig560.5.1 ID=mRNA_P-wetherbeei_contig560.5.1|Name=mRNA_P-wetherbeei_contig560.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=780bp|location=Sequence derived from alignment at P-wetherbeei_contig560:8379..9158- (Phaeothamnion wetherbeei SAG_119_79)
GTCCTGGCGGTGTGGCTGCCGCTGTCGATGGGCTTCGACGTCCTCTTTGT GGACGACGACCTCGTGTGGTGGCGCTCCATCGAGCATCTGCTGGCGACGG GCGATGCCGCTGATGCTGACATCGTAATGCAAGACGACGGGAGCCGCCGT CACGACTTCGCGCCCGGCTTCGGAAACACAGGCAAGGGCAGCAAATTGCC TGTTTGTGGAAGAGGCTTCGAACCAATCGTGCCCTGCGAGTATGCGGTTT TCCTGGCTATAGTGAACCTGTTTTTTTCGAAGCGAACATGTCAAGGCATC CTGCATTCTCAAGAGGAACGACTGGAAAGAGAACCTTGTGTCCGTGCAGT GCCAAGAAAAGGGGGAAGCCACCACAAACAAGCCCGGATGTGTCGGCCAC GCAACGTCGCATGGCCACTCTTGGCGCCTCCCGCCGAACCCGTTCCTTTC GTCGTACCTGCACTCGCGTTCGCGTGCTAATGCCGCCGCCGCCGAACCAT CTCTTATGAACGCATCGTTGTGCCCCCTTTTCCCTTCTCACCCTCTTCCC CCCTCCCCTCCTTCCCTTGCGTTCCCTCCCTCTCTGCCGCCTCTCCCTCT GCCTCTTCAGGTCTTTACTTGGTGCGGCACAACCCGCGGTCGCTGTACTT CATGCGCACCATGCTGCAGAGCTACGACTCCATCGTGAATCGCGCCACAC ACCAGGGCGTCTTCGACACGCTCCTCGACGAGCACGTCGTCAACACAGGC CTCAAGAGCGTCACGTTGCACGAGGACGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig560:8379..9158-

>mRNA_P-wetherbeei_contig560.5.1 ID=mRNA_P-wetherbeei_contig560.5.1|Name=mRNA_P-wetherbeei_contig560.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=348bp|location=Sequence derived from alignment at P-wetherbeei_contig560:8379..9158- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCTTCGACGTCCTCTTTGTGGACGACGACCTCGTGTGGTGGCGCTC
CATCGAGCATCTGCTGGCGACGGGCGATGCCGCTGATGCTGACATCGTAA
TGCAAGACGACGGGAGCCGCCGTCACGACTTCGCGCCCGGCTTCGGAAAC
ACAGGCAAGGGCAGCAAATTGCCTGTTTGTCTTTACTTGGTGCGGCACAA
CCCGCGGTCGCTGTACTTCATGCGCACCATGCTGCAGAGCTACGACTCCA
TCGTGAATCGCGCCACACACCAGGGCGTCTTCGACACGCTCCTCGACGAG
CACGTCGTCAACACAGGCCTCAAGAGCGTCACGTTGCACGAGGACGAC
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