mRNA_P-wetherbeei_contig55963.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55963.1.1
Unique NamemRNA_P-wetherbeei_contig55963.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig55963.1.1 vs. uniprot
Match: A0A6A7MAI3_9PROT (BrnT family toxin n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6A7MAI3_9PROT)

HSP 1 Score: 152 bits (385), Expect = 8.000e-46
Identity = 77/94 (81.91%), Postives = 83/94 (88.30%), Query Frame = 1 
Query:    1 MPDLRFEWDARKSASNANKHKVTFEEARSAFADPDGLVIDDPDHSEEEERFILLGLSYAVRLLVVCHAFRSDVVRIISARKATPREAATYRRKR 282
            MP+LRFEWD RKSASNA KH VTF   RSAFADP+GLVIDDPDHSE+EERFILLGLSYA+RLLVVCH FRSD +RIISARKAT RE+ TYRR R
Sbjct:    1 MPELRFEWDPRKSASNARKHGVTF---RSAFADPNGLVIDDPDHSEDEERFILLGLSYALRLLVVCHVFRSDAIRIISARKATSRESQTYRRNR 91
[Close]
BLAST of mRNA_P-wetherbeei_contig55963.1.1 vs. uniprot
Match: A0A840LBX1_9BURK (Uncharacterized DUF497 family protein n=1 Tax=Paucibacter oligotrophus TaxID=1769250 RepID=A0A840LBX1_9BURK)

HSP 1 Score: 120 bits (302), Expect = 3.620e-33
Identity = 59/92 (64.13%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    1 MPDLRFEWDARKSASNANKHKVTFEEARSAFADPDGLVIDDPDHSEEEERFILLGLSYAVRLLVVCHAFRSD--VVRIISARKATPREAATY 270
            M  LRFEWD +K+A+NA KH VTFEEARS F D    +IDDPDHSE+EERF++LGLS ++RLL+VCH +RS+  V+R+ISARKAT RE+ +Y
Sbjct:    1 MSMLRFEWDEQKAAANAKKHGVTFEEARSVFVDERAKLIDDPDHSEDEERFVILGLSSSLRLLLVCHCYRSEGHVIRLISARKATARESRSY 92
[Close]
BLAST of mRNA_P-wetherbeei_contig55963.1.1 vs. uniprot
Match: A0A4P2PTR1_SORCE (Uncharacterized protein n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A4P2PTR1_SORCE)

HSP 1 Score: 120 bits (302), Expect = 4.200e-33
Identity = 60/92 (65.22%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:    1 MPDLRFEWDARKSASNANKHKVTFEEARSAFADPDGLVIDDPDHSEEEERFILLGLSYAVRLLVVCHAFRS--DVVRIISARKATPREAATY 270
            M  LRFEWDARKSA N  KH V+F+EAR+ F D   L++DDPDHSE E+RFILLGLS   R+LVVCH +R   +V+RIISAR+ATP E ATY
Sbjct:    1 MAGLRFEWDARKSAVNKRKHGVSFDEARTVFTDDRALLLDDPDHSESEDRFILLGLSATTRILVVCHCYRQSGNVIRIISARRATPSERATY 92
[Close]
BLAST of mRNA_P-wetherbeei_contig55963.1.1 vs. uniprot
Match: A0A1F4K549_9BURK (Uncharacterized protein n=1 Tax=Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 TaxID=1797566 RepID=A0A1F4K549_9BURK)

HSP 1 Score: 117 bits (294), Expect = 5.950e-32
Identity = 59/92 (64.13%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:    1 MPDLRFEWDARKSASNANKHKVTFEEARSAFADPDGLVIDDPDHSEEEERFILLGLSYAVRLLVVCHAFRSD--VVRIISARKATPREAATY 270
            M  L FEWD RK+A+NA KH V+FEEARS F D    +IDDPDHSE+EERF+LLGLS  +RLL+VCH +RS+  V+RIISARKA+  EA  Y
Sbjct:    1 MSTLHFEWDDRKAAANAKKHGVSFEEARSVFVDERAKLIDDPDHSEDEERFVLLGLSSTLRLLLVCHCYRSEGNVIRIISARKASANEAKAY 92
[Close]
BLAST of mRNA_P-wetherbeei_contig55963.1.1 vs. uniprot
Match: A0A126ZB89_9BURK (Uncharacterized protein n=1 Tax=Variovorax sp. PAMC 28711 TaxID=1795631 RepID=A0A126ZB89_9BURK)

HSP 1 Score: 117 bits (294), Expect = 5.950e-32
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:    1 MPDLRFEWDARKSASNANKHKVTFEEARSAFADPDGLVIDDPDHSEEEERFILLGLSYAVRLLVVCHAFRSD--VVRIISARKATPREAATY 270
            M  L FEWD RK+A NA KH VTF+EA+S F D    +IDDPDHS++EERF+LLGLS A+RLL+VCH +RS+  V+RI+SARKAT RE+  Y
Sbjct:    1 MSSLLFEWDERKAALNARKHGVTFDEAKSVFVDERARLIDDPDHSDDEERFVLLGLSSALRLLLVCHCYRSEGNVIRIVSARKATGRESKAY 92
[Close]
BLAST of mRNA_P-wetherbeei_contig55963.1.1 vs. uniprot
Match: A0A844B4B5_9BURK (BrnT family toxin n=1 Tax=Caenimonas koreensis DSM 17982 TaxID=1121255 RepID=A0A844B4B5_9BURK)

HSP 1 Score: 116 bits (291), Expect = 1.700e-31
Identity = 57/92 (61.96%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    1 MPDLRFEWDARKSASNANKHKVTFEEARSAFADPDGLVIDDPDHSEEEERFILLGLSYAVRLLVVCHAFRSD--VVRIISARKATPREAATY 270
            M DL+FEWD RK+A+NA KH V F+EA+S F+D    +IDDPDHS+EE+RF+LLGLS  +R+LVVCH +RS+  V+RIISARKAT  E+  Y
Sbjct:    1 MSDLKFEWDPRKAAANAKKHGVGFDEAKSVFSDERAKLIDDPDHSDEEDRFVLLGLSGVLRMLVVCHCYRSEGNVIRIISARKATAGESRLY 92
[Close]
BLAST of mRNA_P-wetherbeei_contig55963.1.1 vs. uniprot
Match: A0A1J5PW03_9ZZZZ (Uncharacterized protein n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5PW03_9ZZZZ)

HSP 1 Score: 115 bits (289), Expect = 3.420e-31
Identity = 56/92 (60.87%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:    1 MPDLRFEWDARKSASNANKHKVTFEEARSAFADPDGLVIDDPDHSEEEERFILLGLSYAVRLLVVCHAFRSD--VVRIISARKATPREAATY 270
            M  LRFEWD RK+ +NA KH V+F+EA+S F D    +IDDPDHS++EERF+LLGLS  +RLLVVCH +RS+  ++RIISARKA+  EA +Y
Sbjct:    1 MSTLRFEWDERKATANAKKHGVSFDEAKSVFLDERAKLIDDPDHSDDEERFVLLGLSRTLRLLVVCHCYRSEGNIIRIISARKASAHEAKSY 92
[Close]
BLAST of mRNA_P-wetherbeei_contig55963.1.1 vs. uniprot
Match: A0A1F4IVE0_9BURK (Uncharacterized protein n=2 Tax=Burkholderiales TaxID=80840 RepID=A0A1F4IVE0_9BURK)

HSP 1 Score: 115 bits (288), Expect = 4.860e-31
Identity = 55/92 (59.78%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:    1 MPDLRFEWDARKSASNANKHKVTFEEARSAFADPDGLVIDDPDHSEEEERFILLGLSYAVRLLVVCHAFRSD--VVRIISARKATPREAATY 270
            M  LRFEWD RK+A+NA KH V+FEEA+S F D    +IDDPDHS++E+RF+LLGLS ++RLLVVCH +R +  ++R ISARKAT +E+  Y
Sbjct:    1 MSTLRFEWDERKAAANAKKHGVSFEEAKSVFVDEQAKLIDDPDHSQDEDRFVLLGLSSSLRLLVVCHCYRDEGNIIRFISARKATTQESRFY 92
[Close]
BLAST of mRNA_P-wetherbeei_contig55963.1.1 vs. uniprot
Match: A0A7Y5DL10_9PROT (BrnT family toxin n=1 Tax=Gallionella sp. TaxID=2052161 RepID=A0A7Y5DL10_9PROT)

HSP 1 Score: 115 bits (287), Expect = 6.890e-31
Identity = 57/92 (61.96%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    1 MPDLRFEWDARKSASNANKHKVTFEEARSAFADPDGLVIDDPDHSEEEERFILLGLSYAVRLLVVCHAFRSD--VVRIISARKATPREAATY 270
            M  LRFEWDARK+++N  KH V+FEEARS FAD    +IDDPDHSE E+RF+LLG+S  +RLL+VCH +RS+  +VRIISARKA  +E+ +Y
Sbjct:    1 MNTLRFEWDARKASANFKKHGVSFEEARSVFADERAKLIDDPDHSEAEDRFVLLGVSSTLRLLLVCHCYRSEGNIVRIISARKAIGKESKSY 92
[Close]
BLAST of mRNA_P-wetherbeei_contig55963.1.1 vs. uniprot
Match: A0A6B2QVV5_9BURK (BrnT family toxin n=1 Tax=Orrella amnicola TaxID=2707330 RepID=A0A6B2QVV5_9BURK)

HSP 1 Score: 115 bits (287), Expect = 7.090e-31
Identity = 53/94 (56.38%), Postives = 75/94 (79.79%), Query Frame = 1 
Query:    1 MPDLRFEWDARKSASNANKHKVTFEEARSAFADPDGLVIDDPDHSEEEERFILLGLSYAVRLLVVCHAFRS--DVVRIISARKATPREAATYRR 276
            M +++FEWD  K+ SN  KH ++F+EA+S F D   L+I+DPDHSE E+RFILLGLS+++R+++VCH +RS  + +RIISARKAT +EA TY+R
Sbjct:    1 MKEIKFEWDVAKAISNLKKHGISFDEAKSVFYDEQALLINDPDHSEAEDRFILLGLSHSIRVVLVCHCYRSQGNTIRIISARKATSKEAKTYKR 94
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55963.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A7MAI3_9PROT8.000e-4681.91BrnT family toxin n=1 Tax=Rhodospirillales bacteri... [more]
A0A840LBX1_9BURK3.620e-3364.13Uncharacterized DUF497 family protein n=1 Tax=Pauc... [more]
A0A4P2PTR1_SORCE4.200e-3365.22Uncharacterized protein n=1 Tax=Sorangium cellulos... [more]
A0A1F4K549_9BURK5.950e-3264.13Uncharacterized protein n=1 Tax=Burkholderiales ba... [more]
A0A126ZB89_9BURK5.950e-3263.04Uncharacterized protein n=1 Tax=Variovorax sp. PAM... [more]
A0A844B4B5_9BURK1.700e-3161.96BrnT family toxin n=1 Tax=Caenimonas koreensis DSM... [more]
A0A1J5PW03_9ZZZZ3.420e-3160.87Uncharacterized protein n=1 Tax=mine drainage meta... [more]
A0A1F4IVE0_9BURK4.860e-3159.78Uncharacterized protein n=2 Tax=Burkholderiales Ta... [more]
A0A7Y5DL10_9PROT6.890e-3161.96BrnT family toxin n=1 Tax=Gallionella sp. TaxID=20... [more]
A0A6B2QVV5_9BURK7.090e-3156.38BrnT family toxin n=1 Tax=Orrella amnicola TaxID=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55963contigP-wetherbeei_contig55963:4..407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog864051.BurJ1DRAFT_1933
PFAMsBrnT_toxin
Model size404
Max annot lvl28216|Betaproteobacteria
KEGG koko:K09803
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.02e-31
EggNOG OGsCOG2929@1|root,COG2929@2|Bacteria,1N6QP@1224|Proteobacteria,2WAXH@28216|Betaproteobacteria,1KP5J@119065|unclassified Burkholderiales
DescriptionRibonuclease toxin, BrnT, of type II toxin-antitoxin system
Cds size285
COG categoryS
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186832.6147592-UTR-P-wetherbeei_contig55963:3..1221683186832.6147592-UTR-P-wetherbeei_contig55963:3..122Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig55963 4..122 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186832.6272295-CDS-P-wetherbeei_contig55963:122..4071683186832.6272295-CDS-P-wetherbeei_contig55963:122..407Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55963 123..407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55963.1.1prot_P-wetherbeei_contig55963.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55963 123..407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55963.1.1

>prot_P-wetherbeei_contig55963.1.1 ID=prot_P-wetherbeei_contig55963.1.1|Name=mRNA_P-wetherbeei_contig55963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
MPDLRFEWDARKSASNANKHKVTFEEARSAFADPDGLVIDDPDHSEEEER
FILLGLSYAVRLLVVCHAFRSDVVRIISARKATPREAATYRRKR*
back to top

mRNA from alignment at P-wetherbeei_contig55963:4..407-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55963.1.1 ID=mRNA_P-wetherbeei_contig55963.1.1|Name=mRNA_P-wetherbeei_contig55963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=404bp|location=Sequence derived from alignment at P-wetherbeei_contig55963:4..407- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGATCTGCGGTTCGAATGGGATGCGCGAAAGTCGGCGAGTAACGC
CAACAAGCACAAGGTCACGTTCGAAGAGGCCCGTTCCGCCTTTGCCGATC
CAGACGGCCTGGTGATCGACGATCCGGATCATTCAGAGGAAGAGGAGCGG
TTCATCCTCCTGGGCTTGAGCTACGCAGTGCGCCTGCTCGTGGTTTGTCA
CGCCTTCCGGTCGGACGTGGTTCGCATCATCTCCGCCCGCAAGGCAACAC
CCCGCGAAGCCGCAACCTATCGAAGGAAAAGATGACAATGCGCAAAGACT
ACGATTTTGCCACCGCCCGCAAAAATCCTCTTGCCGCGCGACTGAAGAAG
CAGGTCACGATCCGGCTCGACCCGGAGTCGATCGCCTACTTCAAGGCCGT
GTCT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig55963:4..407-

>mRNA_P-wetherbeei_contig55963.1.1 ID=mRNA_P-wetherbeei_contig55963.1.1|Name=mRNA_P-wetherbeei_contig55963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig55963:4..407- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCGATCTGCGGTTCGAATGGGATGCGCGAAAGTCGGCGAGTAACGC
CAACAAGCACAAGGTCACGTTCGAAGAGGCCCGTTCCGCCTTTGCCGATC
CAGACGGCCTGGTGATCGACGATCCGGATCATTCAGAGGAAGAGGAGCGG
TTCATCCTCCTGGGCTTGAGCTACGCAGTGCGCCTGCTCGTGGTTTGTCA
CGCCTTCCGGTCGGACGTGGTTCGCATCATCTCCGCCCGCAAGGCAACAC
CCCGCGAAGCCGCAACCTATCGAAGGAAAAGATGA
back to top