mRNA_P-wetherbeei_contig55927.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55927.1.1
Unique NamemRNA_P-wetherbeei_contig55927.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig55927.1.1 vs. uniprot
Match: A0A1G9YT59_9BACT (DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains n=2 Tax=Siphonobacter aquaeclarae TaxID=563176 RepID=A0A1G9YT59_9BACT)

HSP 1 Score: 111 bits (277), Expect = 1.530e-28
Identity = 44/83 (53.01%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:    1 MKRILVVEDHPIMSAGTCQMVRNYLTDAVFTEVDTFWKALQAANMEQYDLVIMDVGIPGGNSVQMVEKFRTMHPNMRLLMFSG 249
            MK++LVVEDHPI+SA TCQ++  Y+ D   TEV TFW+AL+   +E+YDLV+MD+G+PGGN+++M+ + R++ P +R+L+F+G
Sbjct:   22 MKKVLVVEDHPIVSAATCQVITQYVPDVECTEVSTFWRALELVGLEEYDLVVMDLGVPGGNTIEMITRLRSIRPGIRILIFTG 104
[Close]
BLAST of mRNA_P-wetherbeei_contig55927.1.1 vs. uniprot
Match: A0A1G9YKI8_9BACT (Two component transcriptional regulator, LuxR family n=1 Tax=Siphonobacter aquaeclarae TaxID=563176 RepID=A0A1G9YKI8_9BACT)

HSP 1 Score: 103 bits (258), Expect = 6.620e-26
Identity = 46/83 (55.42%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    1 MKRILVVEDHPIMSAGTCQMVRNYLTDAVFTEVDTFWKALQAANMEQYDLVIMDVGIPGGNSVQMVEKFRTMHPNMRLLMFSG 249
            MKRIL+VEDHPI++  T   V  YL DAV  + ++FWKAL+    E +DLVI+D+GIPGGNS+QM+EK R+  P +R+L+F+G
Sbjct:    1 MKRILIVEDHPIVATATTLAVSQYLPDAVCVDTNSFWKALELVETEPFDLVILDLGIPGGNSIQMIEKLRSRQPKVRILIFTG 83
[Close]
BLAST of mRNA_P-wetherbeei_contig55927.1.1 vs. uniprot
Match: A0A5B0FQU7_9BACT (Response regulator transcription factor n=1 Tax=Dyadobacter sp. UC 10 TaxID=2605428 RepID=A0A5B0FQU7_9BACT)

HSP 1 Score: 101 bits (251), Expect = 6.610e-25
Identity = 46/83 (55.42%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:    1 MKRILVVEDHPIMSAGTCQMVRNYLTDAVFTEVDTFWKALQAANMEQYDLVIMDVGIPGGNSVQMVEKFRTMHPNMRLLMFSG 249
            MK IL+ EDHPIM +GT Q+V  Y  D+V TEVDTF KA+ +A  +  DL I+D+GIPGGNSV+M+E F+  HP++++L+FS 
Sbjct:    1 MKHILIAEDHPIMRSGTRQIVHTYFPDSVITEVDTFKKAIMSAGEKACDLAILDIGIPGGNSVKMIEVFKERHPDVKVLIFSS 83
[Close]
BLAST of mRNA_P-wetherbeei_contig55927.1.1 vs. uniprot
Match: A0A5B0FPA1_9BACT (Response regulator transcription factor n=1 Tax=Dyadobacter sp. UC 10 TaxID=2605428 RepID=A0A5B0FPA1_9BACT)

HSP 1 Score: 101 bits (252), Expect = 2.060e-24
Identity = 47/83 (56.63%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:    1 MKRILVVEDHPIMSAGTCQMVRNYLTDAVFTEVDTFWKALQAANMEQYDLVIMDVGIPGGNSVQMVEKFRTMHPNMRLLMFSG 249
            MK IL+ EDHPIM +GT Q+V  Y+  AV TEVDTF KAL +A+ + YDL I+D+GIPGGNSV+M+E F+  +P +++L+FS 
Sbjct:   72 MKNILIAEDHPIMRSGTRQIVHTYMPGAVITEVDTFKKALLSASEKTYDLAILDIGIPGGNSVKMIENFKEKYPAVKVLIFSS 154
[Close]
BLAST of mRNA_P-wetherbeei_contig55927.1.1 vs. uniprot
Match: A0A5B0FRD9_9BACT (Response regulator transcription factor n=1 Tax=Dyadobacter sp. UC 10 TaxID=2605428 RepID=A0A5B0FRD9_9BACT)

HSP 1 Score: 94.4 bits (233), Expect = 3.290e-22
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    1 MKRILVVEDHPIMSAGTCQMVRNYLTDAVFTEVDTFWKALQAANMEQYDLVIMDVGIPGGNSVQMVEKFRTMHPNMRLLMFSG 249
            MK IL+ +DHP+M  GT Q+V  ++ DA  TE D+F KA+ AA  E + LVIMD+G+PGGNSV+MVE F+   P+ ++LM SG
Sbjct:    1 MKHILIADDHPLMRGGTRQIVVGFIPDAKITEADSFKKAILAAEKESFHLVIMDIGMPGGNSVKMVETFKRRWPDTKILMLSG 83
[Close]
BLAST of mRNA_P-wetherbeei_contig55927.1.1 vs. uniprot
Match: UPI001BE17A1D (response regulator transcription factor n=1 Tax=Dyadobacter sp. CECT 9275 TaxID=2822344 RepID=UPI001BE17A1D)

HSP 1 Score: 84.7 bits (208), Expect = 1.630e-18
Identity = 37/83 (44.58%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:    1 MKRILVVEDHPIMSAGTCQMVRNYLTDAVFTEVDTFWKALQAANMEQYDLVIMDVGIPGGNSVQMVEKFRTMHPNMRLLMFSG 249
            MK IL+ EDH ++  GT  ++++ + DAV ++VD F K +QA +++ YDL+I+D+ IPGGN+ +MVE  R   P++++LMFS 
Sbjct:    1 MKHILIAEDHAVVRIGTKHLLQSLIPDAVVSDVDDFDKIIQAIDVQYYDLLILDINIPGGNNTKMVELIRAKSPSIKILMFSS 83
[Close]
BLAST of mRNA_P-wetherbeei_contig55927.1.1 vs. uniprot
Match: A0A5B0FQI3_9BACT (Response regulator transcription factor n=1 Tax=Dyadobacter sp. UC 10 TaxID=2605428 RepID=A0A5B0FQI3_9BACT)

HSP 1 Score: 84.7 bits (208), Expect = 1.880e-18
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 1 
Query:    1 MKRILVVEDHPIMSAGTCQMVRNYLTDAVFTEVDTFWKALQAANMEQYDLVIMDVGIPGGNSVQMVEKFRTMHPNMRLLMFS 246
            M RIL+ +DHP+M AGT Q + N++ +   TEVD+F KA+ AA+   +DL I+D+ +PGGNSV+MVE F    P + +L+ S
Sbjct:    1 MIRILIADDHPLMRAGTRQALNNFIAEVDITEVDSFKKAVHAADSVDFDLAILDISMPGGNSVKMVETFNKKKPGLPVLILS 82
[Close]
BLAST of mRNA_P-wetherbeei_contig55927.1.1 vs. uniprot
Match: C6W5Q8_DYAFD (Two component transcriptional regulator, LuxR family n=27 Tax=Dyadobacter TaxID=120831 RepID=C6W5Q8_DYAFD)

HSP 1 Score: 83.2 bits (204), Expect = 6.430e-18
Identity = 37/83 (44.58%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:    1 MKRILVVEDHPIMSAGTCQMVRNYLTDAVFTEVDTFWKALQAANMEQYDLVIMDVGIPGGNSVQMVEKFRTMHPNMRLLMFSG 249
            MK IL+ EDH ++  GT  ++++ + D+  ++VD F K LQ    + YDL+I+D+ IPGGN+ +MVE  RT  P +R+LMFS 
Sbjct:    1 MKHILIAEDHAVVRIGTKHLLKSLIPDSTISDVDDFDKILQELETKAYDLLILDINIPGGNTTKMVETIRTKSPGIRILMFSS 83
[Close]
BLAST of mRNA_P-wetherbeei_contig55927.1.1 vs. uniprot
Match: A0A316ASX8_9BACT (DNA-binding NarL/FixJ family response regulator n=2 Tax=Dyadobacter TaxID=120831 RepID=A0A316ASX8_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 7.060e-17
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    1 MKRILVVEDHPIMSAGTCQMVRNYLTDAVFTEVDTFWKALQAANMEQYDLVIMDVGIPGGNSVQMVEKFRTMHPNMRLLMFSG 249
            MK I++ EDH ++  GT  ++++ L DA  T VD F   + A N   YDL+I+D+ IPGGN+ +MVE  R   P++++LMFSG
Sbjct:    1 MKHIIIAEDHAVVRIGTKHLLQSLLPDAEITGVDDFDGIITAMNERSYDLLILDINIPGGNNTKMVETIRAKAPDIKILMFSG 83
[Close]
BLAST of mRNA_P-wetherbeei_contig55927.1.1 vs. uniprot
Match: A0A1H6TXB3_9BACT (Two component transcriptional regulator, LuxR family n=5 Tax=Spirosomaceae TaxID=2896860 RepID=A0A1H6TXB3_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 2.120e-16
Identity = 34/83 (40.96%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:    1 MKRILVVEDHPIMSAGTCQMVRNYLTDAVFTEVDTFWKALQAANMEQYDLVIMDVGIPGGNSVQMVEKFRTMHPNMRLLMFSG 249
            MK IL+ EDH ++  GT  ++++ + ++  T VDTF K L   + + +DL+I+D+ IPGGN+ +M+E  R   P++R+LMFS 
Sbjct:    1 MKHILIAEDHAVVRIGTKHLLKSLIPESQITGVDTFQKVLLELSSQNFDLLILDINIPGGNNTKMIETIRIKRPDIRILMFSS 83
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55927.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1G9YT59_9BACT1.530e-2853.01DNA-binding response regulator, NarL/FixJ family, ... [more]
A0A1G9YKI8_9BACT6.620e-2655.42Two component transcriptional regulator, LuxR fami... [more]
A0A5B0FQU7_9BACT6.610e-2555.42Response regulator transcription factor n=1 Tax=Dy... [more]
A0A5B0FPA1_9BACT2.060e-2456.63Response regulator transcription factor n=1 Tax=Dy... [more]
A0A5B0FRD9_9BACT3.290e-2253.01Response regulator transcription factor n=1 Tax=Dy... [more]
UPI001BE17A1D1.630e-1844.58response regulator transcription factor n=1 Tax=Dy... [more]
A0A5B0FQI3_9BACT1.880e-1847.56Response regulator transcription factor n=1 Tax=Dy... [more]
C6W5Q8_DYAFD6.430e-1844.58Two component transcriptional regulator, LuxR fami... [more]
A0A316ASX8_9BACT7.060e-1744.58DNA-binding NarL/FixJ family response regulator n=... [more]
A0A1H6TXB3_9BACT2.120e-1640.96Two component transcriptional regulator, LuxR fami... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55927contigP-wetherbeei_contig55927:271..519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog471854.Dfer_4796
PFAMsGerE,Response_reg
Model size249
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.05e-18
EggNOG OGsCOG2197@1|root,COG2197@2|Bacteria,4NQE7@976|Bacteroidetes
DescriptionTwo component transcriptional regulator, LuxR family
Cds size249
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186832.1719766-CDS-P-wetherbeei_contig55927:270..5191683186832.1719766-CDS-P-wetherbeei_contig55927:270..519Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55927 271..519 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55927.1.1prot_P-wetherbeei_contig55927.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55927 271..519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55927.1.1

>prot_P-wetherbeei_contig55927.1.1 ID=prot_P-wetherbeei_contig55927.1.1|Name=mRNA_P-wetherbeei_contig55927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=83bp
MKRILVVEDHPIMSAGTCQMVRNYLTDAVFTEVDTFWKALQAANMEQYDL
VIMDVGIPGGNSVQMVEKFRTMHPNMRLLMFSG
back to top

mRNA from alignment at P-wetherbeei_contig55927:271..519+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55927.1.1 ID=mRNA_P-wetherbeei_contig55927.1.1|Name=mRNA_P-wetherbeei_contig55927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig55927:271..519+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCGGATTTTAGTAGTTGAAGACCACCCCATCATGAGCGCCGGGAC
TTGTCAAATGGTCAGAAATTACCTGACCGATGCGGTATTTACAGAGGTAG
ATACGTTCTGGAAAGCTTTACAGGCCGCCAATATGGAGCAGTATGATCTT
GTGATCATGGATGTAGGCATACCGGGCGGTAATTCAGTTCAAATGGTTGA
AAAGTTCCGGACAATGCATCCTAACATGAGGCTGCTGATGTTTTCGGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig55927:271..519+

>mRNA_P-wetherbeei_contig55927.1.1 ID=mRNA_P-wetherbeei_contig55927.1.1|Name=mRNA_P-wetherbeei_contig55927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=249bp|location=Sequence derived from alignment at P-wetherbeei_contig55927:271..519+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCGGATTTTAGTAGTTGAAGACCACCCCATCATGAGCGCCGGGAC
TTGTCAAATGGTCAGAAATTACCTGACCGATGCGGTATTTACAGAGGTAG
ATACGTTCTGGAAAGCTTTACAGGCCGCCAATATGGAGCAGTATGATCTT
GTGATCATGGATGTAGGCATACCGGGCGGTAATTCAGTTCAAATGGTTGA
AAAGTTCCGGACAATGCATCCTAACATGAGGCTGCTGATGTTTTCGGGC
back to top