mRNA_P-wetherbeei_contig5592.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5592.3.1
Unique NamemRNA_P-wetherbeei_contig5592.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5592.3.1 vs. uniprot
Match: A0A1F4B249_9PROT (Cytochrome C551 n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 TaxID=1797490 RepID=A0A1F4B249_9PROT)

HSP 1 Score: 104 bits (259), Expect = 1.110e-27
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    7 MAGPLVPQKSPYAVELAPGDYWWCACGRSGRQPFCDGSHKGSGFEPVKFPVKEAQRV 177
            MA P + QKSPYAVELAPGDYWWCACGRSGRQPFCDGSHK + F PVKF + EAQ+V
Sbjct:    1 MAEPNIAQKSPYAVELAPGDYWWCACGRSGRQPFCDGSHKSTEFTPVKFTITEAQKV 57
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BLAST of mRNA_P-wetherbeei_contig5592.3.1 vs. uniprot
Match: A0A537CV65_9PROT (CDGSH iron-sulfur domain-containing protein n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537CV65_9PROT)

HSP 1 Score: 103 bits (256), Expect = 3.360e-27
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    7 MAGPLVPQKSPYAVELAPGDYWWCACGRSGRQPFCDGSHKGSGFEPVKFPVKEAQRV 177
            MA P + Q+SPYAVELAPGDYWWCACGRS RQPFCDGSHKGS F PVKF + EAQ++
Sbjct:    1 MADPTIAQQSPYAVELAPGDYWWCACGRSRRQPFCDGSHKGSEFSPVKFTIGEAQKM 57
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BLAST of mRNA_P-wetherbeei_contig5592.3.1 vs. uniprot
Match: A0A536SHG0_9PROT (CDGSH iron-sulfur domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SHG0_9PROT)

HSP 1 Score: 102 bits (255), Expect = 4.900e-27
Identity = 44/57 (77.19%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    7 MAGPLVPQKSPYAVELAPGDYWWCACGRSGRQPFCDGSHKGSGFEPVKFPVKEAQRV 177
            MA PL+ Q+SPYAVELAPGDYWWCACGRS RQPFCDGSHKGS F P KF + EAQ++
Sbjct:    1 MAEPLIAQRSPYAVELAPGDYWWCACGRSKRQPFCDGSHKGSEFTPAKFIITEAQKL 57
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BLAST of mRNA_P-wetherbeei_contig5592.3.1 vs. uniprot
Match: A0A1F4FDY4_9PROT (Cytochrome C551 n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4FDY4_9PROT)

HSP 1 Score: 102 bits (253), Expect = 9.100e-27
Identity = 44/57 (77.19%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    7 MAGPLVPQKSPYAVELAPGDYWWCACGRSGRQPFCDGSHKGSGFEPVKFPVKEAQRV 177
            MA P + QK PYAVELAPGDYWWCACGRS RQPFCDGSHKGS F P KF + EAQ+V
Sbjct:    1 MAEPNIAQKGPYAVELAPGDYWWCACGRSKRQPFCDGSHKGSEFSPTKFTIAEAQKV 57
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BLAST of mRNA_P-wetherbeei_contig5592.3.1 vs. uniprot
Match: A0A521W6R1_9PROT (CDGSH iron-sulfur domain-containing protein n=3 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521W6R1_9PROT)

HSP 1 Score: 100 bits (250), Expect = 2.540e-26
Identity = 44/57 (77.19%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    7 MAGPLVPQKSPYAVELAPGDYWWCACGRSGRQPFCDGSHKGSGFEPVKFPVKEAQRV 177
            MA P + QK PYAVELAPGDYWWCACGRS RQPFCDGSHKGS F P KF V EA +V
Sbjct:    1 MASPNIAQKGPYAVELAPGDYWWCACGRSKRQPFCDGSHKGSEFTPTKFTVAEAMKV 57
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BLAST of mRNA_P-wetherbeei_contig5592.3.1 vs. uniprot
Match: A0A0S8AWC4_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8AWC4_9PROT)

HSP 1 Score: 100 bits (248), Expect = 5.120e-26
Identity = 44/57 (77.19%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    7 MAGPLVPQKSPYAVELAPGDYWWCACGRSGRQPFCDGSHKGSGFEPVKFPVKEAQRV 177
            M  P+V Q SPYAVELAPGDYWWCACGRS RQPFCDGSHKGS F P +F V EAQ+V
Sbjct:    1 MPDPVVAQSSPYAVELAPGDYWWCACGRSKRQPFCDGSHKGSEFTPHRFTVSEAQKV 57
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BLAST of mRNA_P-wetherbeei_contig5592.3.1 vs. uniprot
Match: A0A1F4F2K8_9PROT (Cytochrome C551 n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F2K8_9PROT)

HSP 1 Score: 97.8 bits (242), Expect = 4.320e-25
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    7 MAGPLVPQKSPYAVELAPGDYWWCACGRSGRQPFCDGSHKGSGFEPVKFPVKEAQRV 177
            MA P++ QK PYAVELAPGDYWWC CG+S RQPFCDGSHK + F PVKF V EAQ+V
Sbjct:    1 MAEPMIAQKGPYAVELAPGDYWWCQCGQSKRQPFCDGSHKTTEFTPVKFTVTEAQKV 57
[Close]
BLAST of mRNA_P-wetherbeei_contig5592.3.1 vs. uniprot
Match: A0A536XUF0_9PROT (CDGSH iron-sulfur domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536XUF0_9PROT)

HSP 1 Score: 97.1 bits (240), Expect = 9.470e-25
Identity = 41/57 (71.93%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    7 MAGPLVPQKSPYAVELAPGDYWWCACGRSGRQPFCDGSHKGSGFEPVKFPVKEAQRV 177
            MA P   Q+ PYAVELAPGDYWWCACGRS RQPFCDGSHKGS F P +F + EAQ++
Sbjct:    1 MAEPFSAQRGPYAVELAPGDYWWCACGRSKRQPFCDGSHKGSEFTPSRFTISEAQKL 57
[Close]
BLAST of mRNA_P-wetherbeei_contig5592.3.1 vs. uniprot
Match: A0A521YSR5_9PROT (CDGSH iron-sulfur domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YSR5_9PROT)

HSP 1 Score: 96.7 bits (239), Expect = 1.420e-24
Identity = 43/57 (75.44%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    7 MAGPLVPQKSPYAVELAPGDYWWCACGRSGRQPFCDGSHKGSGFEPVKFPVKEAQRV 177
            MA P   Q+SPYAVELAPGDYWWCACGRS RQPFCD SH+GS F PVKF + EAQ+V
Sbjct:    1 MAEPHTAQRSPYAVELAPGDYWWCACGRSRRQPFCDRSHQGSEFAPVKFVMTEAQKV 57
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BLAST of mRNA_P-wetherbeei_contig5592.3.1 vs. uniprot
Match: UPI00198BCB36 (CDGSH iron-sulfur domain-containing protein n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI00198BCB36)

HSP 1 Score: 95.5 bits (236), Expect = 3.550e-24
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    7 MAGPLVPQKSPYAVELAPGDYWWCACGRSGRQPFCDGSHKGSGFEPVKFPVKEAQRV 177
            M GP++PQK PYAVELAPGDYWWCACG S  QPFCDGSHK +  +P+KF   EAQ+V
Sbjct:    1 MPGPVIPQKGPYAVELAPGDYWWCACGMSKSQPFCDGSHKATDMKPLKFSNIEAQKV 57
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5592.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4B249_9PROT1.110e-2778.95Cytochrome C551 n=1 Tax=Betaproteobacteria bacteri... [more]
A0A537CV65_9PROT3.360e-2777.19CDGSH iron-sulfur domain-containing protein n=3 Ta... [more]
A0A536SHG0_9PROT4.900e-2777.19CDGSH iron-sulfur domain-containing protein n=1 Ta... [more]
A0A1F4FDY4_9PROT9.100e-2777.19Cytochrome C551 n=2 Tax=unclassified Betaproteobac... [more]
A0A521W6R1_9PROT2.540e-2677.19CDGSH iron-sulfur domain-containing protein n=3 Ta... [more]
A0A0S8AWC4_9PROT5.120e-2677.19Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4F2K8_9PROT4.320e-2573.68Cytochrome C551 n=1 Tax=Betaproteobacteria bacteri... [more]
A0A536XUF0_9PROT9.470e-2571.93CDGSH iron-sulfur domain-containing protein n=1 Ta... [more]
A0A521YSR5_9PROT1.420e-2475.44CDGSH iron-sulfur domain-containing protein n=1 Ta... [more]
UPI00198BCB363.550e-2470.18CDGSH iron-sulfur domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5592contigP-wetherbeei_contig5592:2644..2886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog472759.Nhal_2660
PFAMszf-CDGSH
Model size243
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.1e-22
EggNOG OGsCOG3369@1|root,COG3369@2|Bacteria,1N6QZ@1224|Proteobacteria,1SCN4@1236|Gammaproteobacteria
DescriptionIron-binding zinc finger CDGSH type
Cds size237
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186832.1321802-CDS-P-wetherbeei_contig5592:2643..28801683186832.1321802-CDS-P-wetherbeei_contig5592:2643..2880Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5592 2644..2880 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186832.142451-UTR-P-wetherbeei_contig5592:2880..28861683186832.142451-UTR-P-wetherbeei_contig5592:2880..2886Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5592 2881..2886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5592.3.1prot_P-wetherbeei_contig5592.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5592 2644..2880 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5592.3.1

>prot_P-wetherbeei_contig5592.3.1 ID=prot_P-wetherbeei_contig5592.3.1|Name=mRNA_P-wetherbeei_contig5592.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=79bp
MAGPLVPQKSPYAVELAPGDYWWCACGRSGRQPFCDGSHKGSGFEPVKFP
VKEAQRVWLCGCKHSEGKPFCDGSHSRL*
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mRNA from alignment at P-wetherbeei_contig5592:2644..2886-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5592.3.1 ID=mRNA_P-wetherbeei_contig5592.3.1|Name=mRNA_P-wetherbeei_contig5592.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig5592:2644..2886- (Phaeothamnion wetherbeei SAG_119_79)
GCTGCCATGGCCGGGCCCCTGGTGCCGCAGAAATCCCCGTACGCGGTCGA
ACTGGCGCCGGGTGACTACTGGTGGTGCGCCTGCGGGCGATCCGGGCGCC
AGCCATTCTGCGACGGCTCCCACAAGGGCAGCGGCTTCGAGCCGGTCAAG
TTCCCCGTCAAGGAAGCGCAGAGGGTCTGGCTGTGCGGCTGCAAGCACAG
CGAGGGCAAGCCGTTCTGCGACGGCTCGCACTCGAGGCTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5592:2644..2886-

>mRNA_P-wetherbeei_contig5592.3.1 ID=mRNA_P-wetherbeei_contig5592.3.1|Name=mRNA_P-wetherbeei_contig5592.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=237bp|location=Sequence derived from alignment at P-wetherbeei_contig5592:2644..2886- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGGGCCCCTGGTGCCGCAGAAATCCCCGTACGCGGTCGAACTGGC
GCCGGGTGACTACTGGTGGTGCGCCTGCGGGCGATCCGGGCGCCAGCCAT
TCTGCGACGGCTCCCACAAGGGCAGCGGCTTCGAGCCGGTCAAGTTCCCC
GTCAAGGAAGCGCAGAGGGTCTGGCTGTGCGGCTGCAAGCACAGCGAGGG
CAAGCCGTTCTGCGACGGCTCGCACTCGAGGCTCTGA
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