mRNA_P-wetherbeei_contig55897.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55897.2.1
Unique NamemRNA_P-wetherbeei_contig55897.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55897.2.1 vs. uniprot
Match: A0A537BN81_9PROT (Nitrite/sulfite reductase (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537BN81_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 3.170e-9
Identity = 26/34 (76.47%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 MYRYEPIDQALVDQRVKQFRDQTRRYLAGELSEE 102
            MYRY+ IDQ +VD+RVKQFRDQTRR+LAG+LSE+
Sbjct:    1 MYRYDEIDQRIVDERVKQFRDQTRRFLAGKLSED 34
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BLAST of mRNA_P-wetherbeei_contig55897.2.1 vs. uniprot
Match: A0A1W9J815_9PROT (Sulfite reductase n=6 Tax=Proteobacteria TaxID=1224 RepID=A0A1W9J815_9PROT)

HSP 1 Score: 58.5 bits (140), Expect = 5.040e-9
Identity = 27/34 (79.41%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 MYRYEPIDQALVDQRVKQFRDQTRRYLAGELSEE 102
            MY+Y+ IDQ +VD+RVKQ+RDQTRRYLAGELSEE
Sbjct:    1 MYKYDEIDQQIVDERVKQYRDQTRRYLAGELSEE 34
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BLAST of mRNA_P-wetherbeei_contig55897.2.1 vs. uniprot
Match: A0A4Y4D0E2_ZOORA (Sulfite reductase n=4 Tax=Zoogloea TaxID=349 RepID=A0A4Y4D0E2_ZOORA)

HSP 1 Score: 57.4 bits (137), Expect = 1.290e-8
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MYRYEPIDQALVDQRVKQFRDQTRRYLAGELSEE 102
            MYRY+P DQ +VD+RV QFRDQTRRYLAGEL++E
Sbjct:    1 MYRYDPYDQRIVDERVAQFRDQTRRYLAGELTDE 34
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BLAST of mRNA_P-wetherbeei_contig55897.2.1 vs. uniprot
Match: A0A6C2CR67_9RHOO (Nitrite/sulfite reductase n=2 Tax=Zoogloea TaxID=349 RepID=A0A6C2CR67_9RHOO)

HSP 1 Score: 57.4 bits (137), Expect = 1.290e-8
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MYRYEPIDQALVDQRVKQFRDQTRRYLAGELSEE 102
            MYRY+P DQ +VD+RV QFRDQTRRYLAGEL++E
Sbjct:    1 MYRYDPYDQKIVDERVAQFRDQTRRYLAGELTDE 34
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BLAST of mRNA_P-wetherbeei_contig55897.2.1 vs. uniprot
Match: A0A537CYZ8_9PROT (Nitrite/sulfite reductase n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537CYZ8_9PROT)

HSP 1 Score: 57.0 bits (136), Expect = 1.760e-8
Identity = 26/34 (76.47%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 MYRYEPIDQALVDQRVKQFRDQTRRYLAGELSEE 102
            MY Y+PIDQ +VD+RVKQFRDQTRR+LAG+LSE+
Sbjct:    1 MYLYDPIDQRIVDERVKQFRDQTRRFLAGKLSED 34
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BLAST of mRNA_P-wetherbeei_contig55897.2.1 vs. uniprot
Match: A1K2J4_AZOSB (Putative sulfite reductase n=3 Tax=Azoarcus TaxID=12960 RepID=A1K2J4_AZOSB)

HSP 1 Score: 56.2 bits (134), Expect = 3.290e-8
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 MYRYEPIDQALVDQRVKQFRDQTRRYLAGELSEE 102
            MYRY+  DQ LVD+RV QFRDQTRRYLAGELSE+
Sbjct:    1 MYRYDDYDQRLVDERVAQFRDQTRRYLAGELSED 34
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BLAST of mRNA_P-wetherbeei_contig55897.2.1 vs. uniprot
Match: A0A6C1B2Z9_9RHOO (Nitrite/sulfite reductase n=1 Tax=Nitrogeniibacter mangrovi TaxID=2016596 RepID=A0A6C1B2Z9_9RHOO)

HSP 1 Score: 56.2 bits (134), Expect = 3.290e-8
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 MYRYEPIDQALVDQRVKQFRDQTRRYLAGELSEE 102
            MYRY+  DQ LVD+RVKQF DQTRRYLAGELSE+
Sbjct:    1 MYRYDEYDQQLVDERVKQFADQTRRYLAGELSED 34
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BLAST of mRNA_P-wetherbeei_contig55897.2.1 vs. uniprot
Match: D7DHQ3_METV0 (Nitrite and sulphite reductase 4Fe-4S region n=1 Tax=Methylotenera versatilis (strain 301) TaxID=666681 RepID=D7DHQ3_METV0)

HSP 1 Score: 56.2 bits (134), Expect = 3.290e-8
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MYRYEPIDQALVDQRVKQFRDQTRRYLAGELSEE 102
            MY+Y+ IDQ LVD+RV Q+RDQTRRYLAGELSE+
Sbjct:    1 MYKYDEIDQTLVDERVAQYRDQTRRYLAGELSED 34
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BLAST of mRNA_P-wetherbeei_contig55897.2.1 vs. uniprot
Match: UPI0016781885 (nitrite/sulfite reductase n=1 Tax=Halioglobus pacificus TaxID=930806 RepID=UPI0016781885)

HSP 1 Score: 56.2 bits (134), Expect = 3.290e-8
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MYRYEPIDQALVDQRVKQFRDQTRRYLAGELSEE 102
            MY Y+  DQA+VDQRV+QFRDQTRRYLAGEL+EE
Sbjct:    1 MYVYDQYDQAIVDQRVEQFRDQTRRYLAGELTEE 34
[Close]
BLAST of mRNA_P-wetherbeei_contig55897.2.1 vs. uniprot
Match: A0A521XG92_9PROT (Nitrite/sulfite reductase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521XG92_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 4.490e-8
Identity = 26/34 (76.47%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MYRYEPIDQALVDQRVKQFRDQTRRYLAGELSEE 102
            MYRY+ IDQ +VD+RV QFRDQTRR+LAGELSE+
Sbjct:    1 MYRYDEIDQRIVDERVSQFRDQTRRHLAGELSED 34
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55897.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A537BN81_9PROT3.170e-976.47Nitrite/sulfite reductase (Fragment) n=1 Tax=Betap... [more]
A0A1W9J815_9PROT5.040e-979.41Sulfite reductase n=6 Tax=Proteobacteria TaxID=122... [more]
A0A4Y4D0E2_ZOORA1.290e-876.47Sulfite reductase n=4 Tax=Zoogloea TaxID=349 RepID... [more]
A0A6C2CR67_9RHOO1.290e-876.47Nitrite/sulfite reductase n=2 Tax=Zoogloea TaxID=3... [more]
A0A537CYZ8_9PROT1.760e-876.47Nitrite/sulfite reductase n=3 Tax=Betaproteobacter... [more]
A1K2J4_AZOSB3.290e-879.41Putative sulfite reductase n=3 Tax=Azoarcus TaxID=... [more]
A0A6C1B2Z9_9RHOO3.290e-879.41Nitrite/sulfite reductase n=1 Tax=Nitrogeniibacter... [more]
D7DHQ3_METV03.290e-876.47Nitrite and sulphite reductase 4Fe-4S region n=1 T... [more]
UPI00167818853.290e-879.41nitrite/sulfite reductase n=1 Tax=Halioglobus paci... [more]
A0A521XG92_9PROT4.490e-876.47Nitrite/sulfite reductase n=1 Tax=Betaproteobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55897contigP-wetherbeei_contig55897:420..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog553217.ENHAE0001_1920
Preferred namecysI
PFAMsNIR_SIR,NIR_SIR_ferr
Model size102
Max annot lvl1236|Gammaproteobacteria
KEGG rclassRC00065
KEGG koko:K00381
KEGG ReactionR00858
KEGG Pathwayko00920,ko01100,ko01120,map00920,map01100,map01120
KEGG ModuleM00176
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.11e-09
EggNOG OGsCOG0155@1|root,COG0155@2|Bacteria,1MVVB@1224|Proteobacteria,1RMFH@1236|Gammaproteobacteria,3NKEQ@468|Moraxellaceae
EC1.8.1.2
DescriptionBelongs to the nitrite and sulfite reductase 4Fe-4S domain family
Cds size102
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186831.4468434-CDS-P-wetherbeei_contig55897:419..5211683186831.4468434-CDS-P-wetherbeei_contig55897:419..521Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55897 420..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55897.2.1prot_P-wetherbeei_contig55897.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55897 420..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55897.2.1

>prot_P-wetherbeei_contig55897.2.1 ID=prot_P-wetherbeei_contig55897.2.1|Name=mRNA_P-wetherbeei_contig55897.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=34bp
MYRYEPIDQALVDQRVKQFRDQTRRYLAGELSEE
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mRNA from alignment at P-wetherbeei_contig55897:420..521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55897.2.1 ID=mRNA_P-wetherbeei_contig55897.2.1|Name=mRNA_P-wetherbeei_contig55897.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=102bp|location=Sequence derived from alignment at P-wetherbeei_contig55897:420..521+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTATCGCTACGAACCCATAGACCAGGCCCTGGTCGACCAGCGCGTAAA
GCAGTTTCGTGACCAGACCCGGCGTTATCTGGCCGGTGAATTGAGCGAAG
AA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55897:420..521+

>mRNA_P-wetherbeei_contig55897.2.1 ID=mRNA_P-wetherbeei_contig55897.2.1|Name=mRNA_P-wetherbeei_contig55897.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=102bp|location=Sequence derived from alignment at P-wetherbeei_contig55897:420..521+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTATCGCTACGAACCCATAGACCAGGCCCTGGTCGACCAGCGCGTAAA
GCAGTTTCGTGACCAGACCCGGCGTTATCTGGCCGGTGAATTGAGCGAAG
AA
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