mRNA_P-wetherbeei_contig5589.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5589.1.1
Unique NamemRNA_P-wetherbeei_contig5589.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5589.1.1 vs. uniprot
Match: A0A835YYA3_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYA3_9STRA)

HSP 1 Score: 215 bits (548), Expect = 7.340e-66
Identity = 94/143 (65.73%), Postives = 120/143 (83.92%), Query Frame = 1
Query:    1 RDLIPVEWIGLFGPHELQKLIGGDDERGVDIDNLRANVTYAGGYHESQPVIGWFWDALRSFTPAEQGRFLRFVTSCSRQPLLGFEHMTPRVCVQKVPAGDGGDRLPSSATCMNLLKLPQYGDAQTLRNKLLYAINANAGFELT 429
            R L+P +W+ LF P ELQ+L+GGD ER +DI +LRA+ TY GGYHESQPV+ WFWD + +FTPA+Q  FL+FVTSCSRQPLLGF+H++P +C+Q+V +G+ G++LPSSATCMNLLKLP+Y   +TLR KLLYAI+A AGFELT
Sbjct:  304 RALVPTQWVRLFAPRELQRLVGGDGERRIDIADLRAHTTYGGGYHESQPVMHWFWDIIANFTPAQQALFLKFVTSCSRQPLLGFKHLSPPMCIQQVESGERGNKLPSSATCMNLLKLPRYDSRETLREKLLYAISAGAGFELT 446          
BLAST of mRNA_P-wetherbeei_contig5589.1.1 vs. uniprot
Match: D7FKM0_ECTSI (HECT-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM0_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 7.610e-64
Identity = 99/143 (69.23%), Postives = 121/143 (84.62%), Query Frame = 1
Query:    1 RDLIPVEWIGLFGPHELQKLIGGDDERGVDIDNLRANVTYAGGYHESQPVIGWFWDALRSFTPAEQGRFLRFVTSCSRQPLLGFEHMTPRVCVQKVPAGDGGDRLPSSATCMNLLKLPQYGDAQTLRNKLLYAINANAGFELT 429
            RDLIPVEW+ +F P ELQ+LIGG+  R +D+++L+ N  YAGGYH++QPV+ WFW+A+ SF+P EQG+FL+FVTSCSR PLLGFE + P +C+Q+VP GD G RLPSSATCMNLLKLPQY D QTLR KLLYAI+ANAGFELT
Sbjct: 1254 RDLIPVEWVRMFNPQELQRLIGGEGGRAIDVEDLKRNTLYAGGYHKTQPVMQWFWEAIESFSPEEQGQFLKFVTSCSRPPLLGFERLNPPICLQRVPEGDEG-RLPSSATCMNLLKLPQYEDRQTLREKLLYAISANAGFELT 1395          
BLAST of mRNA_P-wetherbeei_contig5589.1.1 vs. uniprot
Match: A0A7S2G4K7_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4K7_9STRA)

HSP 1 Score: 191 bits (484), Expect = 1.740e-59
Identity = 90/144 (62.50%), Postives = 109/144 (75.69%), Query Frame = 1
Query:    1 RDLIPVEWIGLFGPHELQKLIGGDDERGVDIDNLRANVTYAGGYHESQPVIGWFWDALRSFTPAEQGRFLRFVTSCSRQPLLGFEHMTPRVCVQKVPAG-DGGDRLPSSATCMNLLKLPQYGDAQTLRNKLLYAINANAGFELT 429
             D+I VEWI +F   ELQ +IGG+  R +DIDNLRA+   +GGYH+SQP++ WFW  LR  TP +QG FL+FVTS  RQPLLGFE+M P +C+QKVP G DG  RLPS+ATCMNLLKLP Y     LR KLLYAI+ANAGFE++
Sbjct:   39 HDIINVEWIRMFDARELQMVIGGE-ARAIDIDNLRAHTRVSGGYHDSQPIMQWFWQVLRELTPQQQGDFLKFVTSSPRQPLLGFEYMQPPICIQKVPLGEDGPSRLPSAATCMNLLKLPDYPTCDILREKLLYAISANAGFEMS 181          
BLAST of mRNA_P-wetherbeei_contig5589.1.1 vs. uniprot
Match: W7TQY7_9STRA (HECT-type E3 ubiquitin transferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQY7_9STRA)

HSP 1 Score: 201 bits (511), Expect = 4.080e-57
Identity = 94/144 (65.28%), Postives = 115/144 (79.86%), Query Frame = 1
Query:    1 RDLIPVEWIGLFGPHELQKLIGGDDERGVDIDNLRANVTYAGGYHESQPVIGWFWDALRSFTPAEQGRFLRFVTSCSRQPLLGFEHMTPRVCVQKVP-AGDGGDRLPSSATCMNLLKLPQYGDAQTLRNKLLYAINANAGFELT 429
            RDLIP+ W+ +FG  ELQ L+ G+ +R +DI+NLRA+  Y+GGYH SQP+I WFW+ALRS+TP EQ  FL FVTSCSRQPLLGF+H+ P VC+Q+VP   +GG+RLPSSATCMNLLKLP Y   + LR KLLYAI A AGFEL+
Sbjct: 1145 RDLIPMPWLRMFGAEELQILLTGE-KRAIDIENLRAHTRYSGGYHPSQPIIHWFWEALRSYTPDEQAAFLMFVTSCSRQPLLGFQHLNPPVCIQRVPLTTEGGERLPSSATCMNLLKLPAYPTPEMLREKLLYAITAGAGFELS 1287          
BLAST of mRNA_P-wetherbeei_contig5589.1.1 vs. uniprot
Match: A0A7R9Y9Y8_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9Y8_9STRA)

HSP 1 Score: 184 bits (467), Expect = 2.170e-54
Identity = 86/143 (60.14%), Postives = 109/143 (76.22%), Query Frame = 1
Query:    1 RDLIPVEWIGLFGPHELQKLIGGDDERGVDIDNLRANVTYAGGYHESQPVIGWFWDALRSFTPAEQGRFLRFVTSCSRQPLLGFEHMTPRVCVQKVPAGDGGDRLPSSATCMNLLKLPQYGDAQTLRNKLLYAINANAGFELT 429
            R+LIPV W+ LF   E+Q LIGGD    +D+++L+A+  Y+GGYH SQP I  FW  +  FTP E   FLRF+TSCSRQPLLGF  + P++C+QKVP    G +LPS+ATCMNLLKLPQY D +TLR+KLLYAI++NAGF+LT
Sbjct:  244 RELIPVCWLRLFNAPEVQLLIGGDGYHPIDLNDLKAHCAYSGGYHPSQPYIKAFWQCVDEFTPREHADFLRFITSCSRQPLLGFSSLNPKICIQKVPHEPYG-KLPSAATCMNLLKLPQYDDKETLRSKLLYAISSNAGFDLT 385          
BLAST of mRNA_P-wetherbeei_contig5589.1.1 vs. uniprot
Match: A0A7R9ZRY8_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRY8_9STRA)

HSP 1 Score: 176 bits (447), Expect = 1.080e-52
Identity = 87/149 (58.39%), Postives = 108/149 (72.48%), Query Frame = 1
Query:    1 RDLIPVEWIGLFGPHELQKLIGGDDE-RGVDIDNLRANVTYAGGYHESQPVIGWFWDALRS-FTPAEQGRFLRFVTSCSRQPLLGFEHMTPRVCVQKVPAGDGGD----RLPSSATCMNLLKLPQYGDAQTLRNKLLYAINANAGFELT 429
            RDLIP  W+ LF  +ELQKLIGGDD  RG+D+  L+ ++ YAGGYH SQPV+  FWD L++ FTP +Q +FL+F+TSCSRQPLLGF  + P  C+Q++   +G D    RLP+SATC NLLKLP YG    LR KLL AI + AGFELT
Sbjct:  123 RDLIPASWVRLFSANELQKLIGGDDSIRGIDVAALKRSMQYAGGYHPSQPVVHDFWDLLQNDFTPDQQKKFLKFMTSCSRQPLLGFGSLEPAPCIQQIRLPEGADKEQSRLPTSATCFNLLKLPNYGSKNLLRKKLLAAIESGAGFELT 271          
BLAST of mRNA_P-wetherbeei_contig5589.1.1 vs. uniprot
Match: A0A7S0FT79_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FT79_9STRA)

HSP 1 Score: 172 bits (436), Expect = 2.650e-52
Identity = 84/162 (51.85%), Postives = 109/162 (67.28%), Query Frame = 1
Query:    1 RDLIPVEWIGLFGPHELQKLIGGDDE-RGVDIDNLRANVTYAGGYHESQPVIGWFWDALRSFTPAEQGRFLRFVTSCSRQPLLGFEHMTPRVCVQKVPAGD-----------GGD-------RLPSSATCMNLLKLPQYGDAQTLRNKLLYAINANAGFELT 429
            RDLIP  W+ LF  +ELQKLI GDD  +G+++  LRA   YAGGYH SQP++ WFW+ L  FTP++Q  FL+F TSCSRQPLLGF+ + P  C+Q++   +           GG+       RLP+S+TCMNLLKLP+Y   + LR KLLYAI + AGFEL+
Sbjct:   12 RDLIPAAWVRLFSANELQKLISGDDTVKGINVAGLRAATVYAGGYHPSQPIMQWFWEVLEEFTPSQQRDFLKFTTSCSRQPLLGFQALVPVPCIQQIRLTEDEEXXXXXQQAGGENAMISKARLPTSSTCMNLLKLPKYKSKEMLREKLLYAIESGAGFELS 173          
BLAST of mRNA_P-wetherbeei_contig5589.1.1 vs. uniprot
Match: A0A6U6CBM7_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6CBM7_9STRA)

HSP 1 Score: 177 bits (448), Expect = 6.460e-51
Identity = 87/160 (54.37%), Postives = 107/160 (66.88%), Query Frame = 1
Query:    1 RDLIPVEWIGLFGPHELQKLIGGDDE-RGVDIDNLRANVTYAGGYHESQPVIGWFWDALRSFTPAEQGRFLRFVTSCSRQPLLGFEHMTPRVCVQKVPAGDG---------------GD-RLPSSATCMNLLKLPQYGDAQTLRNKLLYAINANAGFELT 429
            RDL+P  W+ LF P ELQ+LIGGDD  RG+D+D L+    Y+GGYH SQP++ WFW+ L   +P  Q  FL+FVTSCSRQPLLGF  + P  CVQ++   DG               GD RLP+S+TCMNLLKLP+Y   + LR KLLYAI A AGFEL+
Sbjct:  292 RDLVPPSWVRLFNPRELQRLIGGDDTVRGIDVDGLKRVTQYSGGYHPSQPIMTWFWEVLEEMSPQRQRAFLKFVTSCSRQPLLGFGALDPLPCVQQIHLRDGEGFGGGRGRAGGGNQGDVRLPTSSTCMNLLKLPKYPSKEILREKLLYAIEAGAGFELS 451          
BLAST of mRNA_P-wetherbeei_contig5589.1.1 vs. uniprot
Match: A0A7S3M9B6_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M9B6_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.200e-49
Identity = 84/156 (53.85%), Postives = 104/156 (66.67%), Query Frame = 1
Query:    1 RDLIPVEWIGLFGPHELQKLIGGDDERGVDIDNLRANVTYAGGYHESQPVIGWFWDALRSFTPAEQGRFLRFVTSCSRQPLLGFEHMTPRVCVQKVPA-------------GDGGDRLPSSATCMNLLKLPQYGDAQTLRNKLLYAINANAGFELT 429
            + +IP+EW+ +FG  ELQ LI GD  R +DI +++ANV YA GYHESQP +  FW  + +  P +QG  LRFVTSCSRQPLLGF  + PR  +QKVPA             G+   RLPS+ATCMNLLKLP Y     LR KLLYAI +N+GFEL+
Sbjct:   60 QSMIPLEWVRMFGSSELQLLISGDQRR-IDIADMKANVHYASGYHESQPYMQAFWSIVENMDPVDQGHLLRFVTSCSRQPLLGFGQLNPRFAIQKVPAYASQYTGLEPPQPGEA-PRLPSAATCMNLLKLPCYDSVDMLREKLLYAIRSNSGFELS 213          
BLAST of mRNA_P-wetherbeei_contig5589.1.1 vs. uniprot
Match: A0A7S2HJ33_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HJ33_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.430e-49
Identity = 83/160 (51.88%), Postives = 107/160 (66.88%), Query Frame = 1
Query:    1 RDLIPVEWIGLFGPHELQKLIGGDDE-RGVDIDNLRANVTYAGGYHESQPVIGWFWDALRSFTPAEQGRFLRFVTSCSRQPLLGFEHMTPRVCVQKVP---------------AGDGGD-RLPSSATCMNLLKLPQYGDAQTLRNKLLYAINANAGFELT 429
            RDLIP  W+ LF  +ELQK+I GDD  +G+D++ LR+ + YAGGYH SQP+I W W+ +   TP +Q  FL+F+TSCSRQPLLGF  + P  CVQ++                + DG D RLP+S+TCMNLLKLP Y   Q LR KL+YAI + AGFEL+
Sbjct:  108 RDLIPAAWVRLFSAYELQKMISGDDTIKGIDVNKLRSVMQYAGGYHPSQPIIRWLWEVVDEMTPGQQRMFLKFMTSCSRQPLLGFHALVPTPCVQQIRLRDEDWNDGRGGHQGSVDGRDVRLPTSSTCMNLLKLPNYKTKQMLREKLVYAIESAAGFELS 267          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5589.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YYA3_9STRA7.340e-6665.73HECT-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
D7FKM0_ECTSI7.610e-6469.23HECT-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
A0A7S2G4K7_9STRA1.740e-5962.50HECT-type E3 ubiquitin transferase n=1 Tax=Florenc... [more]
W7TQY7_9STRA4.080e-5765.28HECT-type E3 ubiquitin transferase n=3 Tax=Monodop... [more]
A0A7R9Y9Y8_9STRA2.170e-5460.14HECT-type E3 ubiquitin transferase n=1 Tax=Pinguio... [more]
A0A7R9ZRY8_9STRA1.080e-5258.39HECT-type E3 ubiquitin transferase n=1 Tax=Crasped... [more]
A0A7S0FT79_9STRA2.650e-5251.85HECT-type E3 ubiquitin transferase n=1 Tax=Minutoc... [more]
A0A6U6CBM7_9STRA6.460e-5154.38HECT-type E3 ubiquitin transferase n=1 Tax=Odontel... [more]
A0A7S3M9B6_9STRA1.200e-4953.85HECT-type E3 ubiquitin transferase n=1 Tax=Spumell... [more]
A0A7S2HJ33_9STRA1.430e-4951.88HECT-type E3 ubiquitin transferase n=1 Tax=Helicot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5589contigP-wetherbeei_contig5589:112..543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FKM0
PFAMsHECT
Model size432
Max annot lvl2759|Eukaryota
KEGG koko:K10589
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564
Exons1
Evalue1.25e-64
EggNOG OGsCOG5021@1|root,KOG0942@2759|Eukaryota
EC2.3.2.26
Descriptionubiquitin-protein transferase activity
Cds size432
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186831.354629-CDS-P-wetherbeei_contig5589:111..5431683186831.354629-CDS-P-wetherbeei_contig5589:111..543Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5589 112..543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5589.1.1prot_P-wetherbeei_contig5589.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5589 112..543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5589.1.1

>prot_P-wetherbeei_contig5589.1.1 ID=prot_P-wetherbeei_contig5589.1.1|Name=mRNA_P-wetherbeei_contig5589.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
RDLIPVEWIGLFGPHELQKLIGGDDERGVDIDNLRANVTYAGGYHESQPV
IGWFWDALRSFTPAEQGRFLRFVTSCSRQPLLGFEHMTPRVCVQKVPAGD
GGDRLPSSATCMNLLKLPQYGDAQTLRNKLLYAINANAGFELT*
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mRNA from alignment at P-wetherbeei_contig5589:112..543+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5589.1.1 ID=mRNA_P-wetherbeei_contig5589.1.1|Name=mRNA_P-wetherbeei_contig5589.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig5589:112..543+ (Phaeothamnion wetherbeei SAG_119_79)
AGGGATCTGATCCCGGTGGAGTGGATTGGGCTGTTCGGCCCCCACGAGCT GCAGAAGCTCATTGGCGGCGACGACGAGCGCGGCGTCGACATCGACAACC TGCGGGCGAACGTCACCTACGCCGGCGGCTACCACGAGTCACAGCCCGTC ATCGGCTGGTTCTGGGACGCGCTGCGCTCCTTCACGCCCGCCGAGCAGGG GCGGTTCCTGCGGTTCGTGACGTCGTGCTCGCGGCAGCCGCTGCTGGGAT TCGAGCACATGACACCGCGAGTCTGCGTGCAGAAGGTGCCGGCCGGCGAT GGTGGCGATCGGCTGCCCAGCAGCGCTACGTGCATGAACCTGCTGAAGCT GCCGCAGTACGGCGACGCCCAGACGCTGCGCAACAAGCTGCTGTACGCGA TCAATGCCAACGCCGGCTTCGAGCTGACTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5589:112..543+

>mRNA_P-wetherbeei_contig5589.1.1 ID=mRNA_P-wetherbeei_contig5589.1.1|Name=mRNA_P-wetherbeei_contig5589.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig5589:112..543+ (Phaeothamnion wetherbeei SAG_119_79)
AGGGATCTGATCCCGGTGGAGTGGATTGGGCTGTTCGGCCCCCACGAGCT
GCAGAAGCTCATTGGCGGCGACGACGAGCGCGGCGTCGACATCGACAACC
TGCGGGCGAACGTCACCTACGCCGGCGGCTACCACGAGTCACAGCCCGTC
ATCGGCTGGTTCTGGGACGCGCTGCGCTCCTTCACGCCCGCCGAGCAGGG
GCGGTTCCTGCGGTTCGTGACGTCGTGCTCGCGGCAGCCGCTGCTGGGAT
TCGAGCACATGACACCGCGAGTCTGCGTGCAGAAGGTGCCGGCCGGCGAT
GGTGGCGATCGGCTGCCCAGCAGCGCTACGTGCATGAACCTGCTGAAGCT
GCCGCAGTACGGCGACGCCCAGACGCTGCGCAACAAGCTGCTGTACGCGA
TCAATGCCAACGCCGGCTTCGAGCTGACTTGA
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