mRNA_P-wetherbeei_contig55871.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55871.1.1
Unique NamemRNA_P-wetherbeei_contig55871.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55871.1.1 vs. uniprot
Match: UPI001C3D5105 (hypothetical protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3D5105)

HSP 1 Score: 226 bits (577), Expect = 6.950e-72
Identity = 113/129 (87.60%), Postives = 123/129 (95.35%), Query Frame = 1
Query:    1 MAEIIRYGAYLPRYRAPLKEIQSFYGRPGRPRAKALCTPALDEDTLTMAYEAATAALEGAERPGAVITVSQSPPFGLRKLSATLARALGLEGILPLDVGGHSGSLLDALEIAGALSGEGNPPALVVVSD 387
            MA+I+RYGAYLPRYRAPLKEIQSF+GRPGRPR+KALCTPALDEDTLTMAYEA+ AAL GAE PG VITVSQSPPFGLRKLSATLAR LGL+G+LP+DVGGHSGSLLDALEIAGAL+GEGNPPALVV +D
Sbjct:    1 MADILRYGAYLPRYRAPLKEIQSFFGRPGRPRSKALCTPALDEDTLTMAYEASVAALAGAEAPGVVITVSQSPPFGLRKLSATLARTLGLDGVLPIDVGGHSGSLLDALEIAGALAGEGNPPALVVAAD 129          
BLAST of mRNA_P-wetherbeei_contig55871.1.1 vs. uniprot
Match: A0A2S2C6F3_9NOCA (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Rhodococcus sp. S2-17 TaxID=1990687 RepID=A0A2S2C6F3_9NOCA)

HSP 1 Score: 70.1 bits (170), Expect = 1.760e-11
Identity = 52/133 (39.10%), Postives = 73/133 (54.89%), Query Frame = 1
Query:    1 MAEIIRYGAYLPRYRAPLKEIQSFYGRPGRPRAKALCTPALDEDTLTMAYEAATAALEGAE---RPGAVITVSQSPPFGLRKLSATLARALGLEG-ILPLDVGGHSGSLLDALEIAGALSGEGNPPALVVVSD 387
            M+ +I YGAY+P YR  +KEI S  G PG P ++++   A DEDT +MA EAA  AL G      PG V   + +PP+  +  +A +  AL L    L +D+GG   S + A+  A     E   PAL ++SD
Sbjct:    1 MSGLIAYGAYIPHYRLRVKEIGSVLGGPGGPGSRSVA--AYDEDTTSMAVEAARIALRGLPGTVAPGRVYFATANPPYLDKTNAAVIHAALSLPARALAVDLGGAPRSSIGAVLAAA----ESTEPALALLSD 127          
BLAST of mRNA_P-wetherbeei_contig55871.1.1 vs. uniprot
Match: A0A832GZU8_9CREN (UPF0219 protein ENV13_08710 n=1 Tax=Thermofilum sp. TaxID=1961369 RepID=A0A832GZU8_9CREN)

HSP 1 Score: 69.3 bits (168), Expect = 2.580e-11
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 1
Query:   10 IIRYGAYLPRYRAPLKEIQSFYGRPGRPRAKALCTPALDEDTLTMAYEAATAALE--GAERP--GAVITVSQSPPFGLRKLSATLARALGL 270
            I  YGAY+P YR    E+   +G       K    P+LDED+LTMAYEAA  ALE  G ER   GAV+  S+SPP+ ++  +  +A ALGL
Sbjct:    9 IAGYGAYVPIYRIKAAEVARIWGSGEEEPVKEKSVPSLDEDSLTMAYEAAREALEMAGVERSEVGAVLVGSESPPYAVKPSATVIAEALGL 99          
BLAST of mRNA_P-wetherbeei_contig55871.1.1 vs. uniprot
Match: A0A7C4SEI7_9CREN (UPF0219 protein ENU81_00215 n=4 Tax=Thermofilum sp. TaxID=1961369 RepID=A0A7C4SEI7_9CREN)

HSP 1 Score: 68.6 bits (166), Expect = 4.870e-11
Identity = 42/91 (46.15%), Postives = 53/91 (58.24%), Query Frame = 1
Query:   10 IIRYGAYLPRYRAPLKEIQSFYGRPGRPRAKALCTPALDEDTLTMAYEAATAALE--GAERP--GAVITVSQSPPFGLRKLSATLARALGL 270
            I  YGAY+P YR    E+   +G       K    P LDED+LTMAYEAA  ALE  G ER   GAV+  S+SPP+ ++  +  +A ALGL
Sbjct:    9 IAGYGAYVPIYRIEGSEVARIWGSGDEEPIKEKSVPGLDEDSLTMAYEAARGALEMAGVERSEVGAVLVGSESPPYAVKPSATVIAEALGL 99          
BLAST of mRNA_P-wetherbeei_contig55871.1.1 vs. uniprot
Match: A0A660TBH3_9SPIR (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Spirochaetes bacterium TaxID=2202144 RepID=A0A660TBH3_9SPIR)

HSP 1 Score: 67.8 bits (164), Expect = 9.220e-11
Identity = 42/95 (44.21%), Postives = 56/95 (58.95%), Query Frame = 1
Query:    1 MAEIIRYGAYLPRYRAPLKEIQSFYGR-PGRPRAKALCTPALDEDTLTMAYEAATAALEGAE-RPGAVITV---SQSPPFGLRKLSATLARALGL 270
            +A I+ YGAYLP YR    EI   YGR P R   K    P LDED+LT+AYEAA  A++ A+  P  +  V   S+SPP+ ++     +A ALG+
Sbjct:    4 LASILGYGAYLPIYRIASAEIARIYGRSPDRTPIKEKTVPGLDEDSLTIAYEAAKNAIKRADVNPSEIEAVYIGSESPPYAVKPSGTVIAEALGI 98          
BLAST of mRNA_P-wetherbeei_contig55871.1.1 vs. uniprot
Match: A0A497G5D9_9CREN (Hydroxymethylglutaryl-CoA synthase (Fragment) n=1 Tax=Thermoprotei archaeon TaxID=2250277 RepID=A0A497G5D9_9CREN)

HSP 1 Score: 63.9 bits (154), Expect = 2.070e-10
Identity = 42/92 (45.65%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   10 IIRYGAYLPRYRAPLKEIQSFYGRPGRP-RAKALCTPALDEDTLTMAYEAATAALE--GAE--RPGAVITVSQSPPFGLRKLSATLARALGL 270
            I  YG Y+P+YR   +EI   +G    P R K++  P LDED+LTMAYEAA  AL   G E  R GAV+  S+SPP+ ++  +  +A ALG+
Sbjct:    9 IAGYGGYVPQYRVKCEEIARVWGSQRAPIREKSV--PNLDEDSLTMAYEAAKMALRMAGVEPGRVGAVLVGSESPPYAVKPTATVVAEALGV 98          
BLAST of mRNA_P-wetherbeei_contig55871.1.1 vs. uniprot
Match: A0A329TA87_9EURY (3-hydroxy-3-methylglutaryl CoA synthase n=1 Tax=Halorubrum sp. 48-1-W TaxID=2249761 RepID=A0A329TA87_9EURY)

HSP 1 Score: 65.9 bits (159), Expect = 5.420e-10
Identity = 53/134 (39.55%), Postives = 73/134 (54.48%), Query Frame = 1
Query:    1 MAEIIRYGAYLPRYRAPLKEIQSFYGRPGRPRAKALCTPALDEDTLTMAYEAATAAL--EGAERPGAVITV--SQSPPFGLRKLSATLARALGL-EGILPLDVGGHSGSLLDALEIAGALSGEGNPPALVVVSD 387
            M  I   GAY+PR+R P +E+ S +G       +    PA+DED LTMA EAA  AL  +  +R    +T   + +PP    +L   L RAL L + +    VGGH+ +  +AL  + AL  EG  PALVVV+D
Sbjct:    1 MRGIAAAGAYVPRFRLPAEELASAWGTSHASGIRRKAVPAVDEDALTMAVEAAERALSSDAVDRDELTLTAVATTTPPAEEGELLPRLVRALALPKSVETATVGGHTAAGAEAL--SRALDAEG--PALVVVAD 130          
BLAST of mRNA_P-wetherbeei_contig55871.1.1 vs. uniprot
Match: A0A842Y6N6_9EURY (UPF0219 protein IBX40_07040 n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A842Y6N6_9EURY)

HSP 1 Score: 63.9 bits (154), Expect = 2.170e-9
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   10 IIRYGAYLPRYRAPLKEIQSFYGRPGRP-----RAKALCTPALDEDTLTMAYEAATAALE----GAERPGAVITVSQSPPFGLRKLSATLARALGLEGIL 282
            I+ YGAY+PRYR  L+ I + +G  G+      + K    P LDEDT+T+A EAA  A++       R GA+ T S+S P+ ++  S  +A A+G E +L
Sbjct:    5 IVSYGAYIPRYRIKLENIAAVWGADGQSFINGLQVKEKSVPDLDEDTVTIAVEAARNAIKKQNIDPSRIGAIYTGSESHPYAVKPTSTIVAAAIGAEPVL 104          
BLAST of mRNA_P-wetherbeei_contig55871.1.1 vs. uniprot
Match: A0A7C0ZWX5_9CREN (UPF0219 protein ENG54_00880 n=3 Tax=Thermoprotei TaxID=183924 RepID=A0A7C0ZWX5_9CREN)

HSP 1 Score: 63.2 bits (152), Expect = 4.080e-9
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   10 IIRYGAYLPRYRAPLKEIQSFYGRPGRPRAKALCTPALDEDTLTMAYEAATAALEGAERPG----AVITVSQSPPFGLRKLSATLARALGL 270
            II YGAY+P YR   +EI   +G+   P  K    P LDED+LTMAYEA+  A++ A+ P     AV   S+SPP+ ++  +  +A ALG+
Sbjct:   11 IIGYGAYVPIYRIKNQEIARVWGKSAWP-IKEKSVPGLDEDSLTMAYEASYNAIKRAQIPPEEIEAVYVGSESPPYAVKPSATVIAEALGI 100          
BLAST of mRNA_P-wetherbeei_contig55871.1.1 vs. uniprot
Match: A0A2H5VER9_9ARCH (3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=archaeon HR06 TaxID=2035442 RepID=A0A2H5VER9_9ARCH)

HSP 1 Score: 62.4 bits (150), Expect = 7.580e-9
Identity = 44/126 (34.92%), Postives = 67/126 (53.17%), Query Frame = 1
Query:   19 YGAYLPRYRAPLKEIQSFYGRPGRPRAKALCTPALDEDTLTMAYEAATAALEGAERP--GAVITVSQSPPFGLRKLSATLARALGLEGILPLDVGGHSGSLLDALEIAGALSGEGN-PPALVVVSD 387
            YGAY+PR+R P KEI+  +G+ G    +      +DEDT TMA EAA  AL  A+    GA+   ++S P+ ++  +  +A ALGL  +L  D      +  +AL+    L G G     +++ SD
Sbjct:   12 YGAYIPRFRLPSKEIERVWGK-GERGIEEKSVAGMDEDTCTMAVEAAKRALSMAKVKTLGAIFVGTESKPYAVKPTATIVAEALGLRRVLASDFEFACKAGTEALQCVIGLVGSGMIEHGMIIASD 136          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55871.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3D51056.950e-7287.60hypothetical protein n=1 Tax=Miltoncostaea oceani ... [more]
A0A2S2C6F3_9NOCA1.760e-1139.10Hydroxymethylglutaryl-CoA synthase n=1 Tax=Rhodoco... [more]
A0A832GZU8_9CREN2.580e-1146.15UPF0219 protein ENV13_08710 n=1 Tax=Thermofilum sp... [more]
A0A7C4SEI7_9CREN4.870e-1146.15UPF0219 protein ENU81_00215 n=4 Tax=Thermofilum sp... [more]
A0A660TBH3_9SPIR9.220e-1144.21Hydroxymethylglutaryl-CoA synthase n=1 Tax=Spiroch... [more]
A0A497G5D9_9CREN2.070e-1045.65Hydroxymethylglutaryl-CoA synthase (Fragment) n=1 ... [more]
A0A329TA87_9EURY5.420e-1039.553-hydroxy-3-methylglutaryl CoA synthase n=1 Tax=Ha... [more]
A0A842Y6N6_9EURY2.170e-939.00UPF0219 protein IBX40_07040 n=1 Tax=Methanosarcina... [more]
A0A7C0ZWX5_9CREN4.080e-942.86UPF0219 protein ENG54_00880 n=3 Tax=Thermoprotei T... [more]
A0A2H5VER9_9ARCH7.580e-934.923-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55871contigP-wetherbeei_contig55871:109..495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1121472.AQWN01000006_gene1675
PFAMsACP_syn_III_C,DUF35_N,OB_aCoA_assoc
Model size387
Max annot lvl186801|Clostridia
KEGG rclassRC00004,RC00503
KEGG koko:K01641
KEGG ReactionR01978
KEGG Pathwayko00072,ko00280,ko00650,ko00900,ko01100,ko01110,ko01130,map00072,map00280,map00650,map00900,map01100,map01110,map01130
KEGG ModuleM00088,M00095
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.63e-09
EggNOG OGsCOG1545@1|root,COG3425@1|root,COG1545@2|Bacteria,COG3425@2|Bacteria,1UDNN@1239|Firmicutes,24DF4@186801|Clostridia,263HP@186807|Peptococcaceae
EC2.3.3.10
DescriptionDUF35 OB-fold domain, acyl-CoA-associated
Cds size387
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186831.269679-CDS-P-wetherbeei_contig55871:108..4951683186831.269679-CDS-P-wetherbeei_contig55871:108..495Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55871 109..495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55871.1.1prot_P-wetherbeei_contig55871.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55871 109..495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55871.1.1

>prot_P-wetherbeei_contig55871.1.1 ID=prot_P-wetherbeei_contig55871.1.1|Name=mRNA_P-wetherbeei_contig55871.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
MAEIIRYGAYLPRYRAPLKEIQSFYGRPGRPRAKALCTPALDEDTLTMAY
EAATAALEGAERPGAVITVSQSPPFGLRKLSATLARALGLEGILPLDVGG
HSGSLLDALEIAGALSGEGNPPALVVVSD
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mRNA from alignment at P-wetherbeei_contig55871:109..495+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55871.1.1 ID=mRNA_P-wetherbeei_contig55871.1.1|Name=mRNA_P-wetherbeei_contig55871.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig55871:109..495+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGAGATCATCCGGTACGGGGCGTATCTGCCCCGTTACCGGGCGCC TCTGAAGGAGATCCAGTCCTTCTACGGCCGCCCCGGTCGACCGCGCGCGA AGGCCCTCTGTACGCCTGCCCTCGATGAGGACACCCTCACGATGGCCTAC GAGGCCGCCACCGCGGCCCTCGAGGGGGCCGAGCGCCCGGGCGCGGTCAT CACGGTCAGCCAGTCGCCACCCTTTGGCCTTCGCAAGCTGTCGGCCACGC TGGCGCGCGCGCTGGGCCTCGAGGGGATCCTGCCCCTCGATGTCGGCGGC CACTCGGGCTCGCTGCTCGACGCGCTGGAGATCGCCGGAGCTCTGTCGGG TGAGGGCAATCCGCCCGCGCTCGTGGTGGTCTCGGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55871:109..495+

>mRNA_P-wetherbeei_contig55871.1.1 ID=mRNA_P-wetherbeei_contig55871.1.1|Name=mRNA_P-wetherbeei_contig55871.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig55871:109..495+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGGAGATCATCCGGTACGGGGCGTATCTGCCCCGTTACCGGGCGCC
TCTGAAGGAGATCCAGTCCTTCTACGGCCGCCCCGGTCGACCGCGCGCGA
AGGCCCTCTGTACGCCTGCCCTCGATGAGGACACCCTCACGATGGCCTAC
GAGGCCGCCACCGCGGCCCTCGAGGGGGCCGAGCGCCCGGGCGCGGTCAT
CACGGTCAGCCAGTCGCCACCCTTTGGCCTTCGCAAGCTGTCGGCCACGC
TGGCGCGCGCGCTGGGCCTCGAGGGGATCCTGCCCCTCGATGTCGGCGGC
CACTCGGGCTCGCTGCTCGACGCGCTGGAGATCGCCGGAGCTCTGTCGGG
TGAGGGCAATCCGCCCGCGCTCGTGGTGGTCTCGGAT
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