mRNA_P-wetherbeei_contig55864.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55864.1.1
Unique NamemRNA_P-wetherbeei_contig55864.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig55864.1.1 vs. uniprot
Match: A0A7C3NSH0_9PROT (DUF1318 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7C3NSH0_9PROT)

HSP 1 Score: 160 bits (404), Expect = 2.400e-48
Identity = 79/115 (68.70%), Postives = 89/115 (77.39%), Query Frame = 1 
Query:    4 NLEVSTPAIAALQGSFQRRHGGLAPFYGNGAVGLTNNGLIAWRDINVVSSAQYQQVNALIIAENEDRNALYREIARANGRPEWESQIRATFSLRWIDMAPRGLYYQNSFGAWIRK 348
            NLE++TPAIA+LQ S Q RHG LAP Y +GAVGLT +G +A RD + V  AQ QQVNALI AEN+DR ALYREIARANGRPEWE  IRATF+ RWI  A  G YYQN  GAW+RK
Sbjct:   26 NLEINTPAIASLQASMQSRHGQLAPLYASGAVGLTRDGNVALRDASAVPLAQRQQVNALIAAENQDRAALYREIARANGRPEWEQDIRATFAQRWISRAAPGWYYQNPAGAWVRK 140
[Close]
BLAST of mRNA_P-wetherbeei_contig55864.1.1 vs. uniprot
Match: A0A1F4DQ95_9PROT (DUF1318 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DQ95_9PROT)

HSP 1 Score: 159 bits (402), Expect = 4.550e-48
Identity = 77/116 (66.38%), Postives = 93/116 (80.17%), Query Frame = 1 
Query:    1 ANLEVSTPAIAALQGSFQRRHGGLAPFYGNGAVGLTNNGLIAWRDINVVSSAQYQQVNALIIAENEDRNALYREIARANGRPEWESQIRATFSLRWIDMAPRGLYYQNSFGAWIRK 348
            ANLE++TPAIA+LQ S Q+RHG LA  Y +GAVGLT +  +A RD N V+ AQ QQVN+LI AEN+DR ALYREIARANG+PEWE+ IRATF+ RWI+ A  G YYQN+ GAW+RK
Sbjct:   23 ANLEINTPAIASLQASMQQRHGQLAGLYASGAVGLTRDANVALRDANAVALAQRQQVNSLIAAENQDRAALYREIARANGKPEWENDIRATFAQRWIEKAQAGWYYQNTSGAWVRK 138
[Close]
BLAST of mRNA_P-wetherbeei_contig55864.1.1 vs. uniprot
Match: A0A0S8C657_9PROT (Cellobiose phosphorylase n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8C657_9PROT)

HSP 1 Score: 156 bits (394), Expect = 8.240e-47
Identity = 77/116 (66.38%), Postives = 89/116 (76.72%), Query Frame = 1 
Query:    1 ANLEVSTPAIAALQGSFQRRHGGLAPFYGNGAVGLTNNGLIAWRDINVVSSAQYQQVNALIIAENEDRNALYREIARANGRPEWESQIRATFSLRWIDMAPRGLYYQNSFGAWIRK 348
            ANLE++TPAIAALQ S Q+RH  LA  Y +GAVG T +G +A RD   V  AQ QQVNALI +EN+DR ALYREIARANG PEWE+ IRATF+ RWI  A RG YYQN+ GAW+RK
Sbjct:   26 ANLEINTPAIAALQRSMQQRHSQLASLYNSGAVGFTRDGNVALRDAKAVPLAQRQQVNALIASENQDRAALYREIARANGHPEWENDIRATFAQRWISRAQRGWYYQNASGAWVRK 141
[Close]
BLAST of mRNA_P-wetherbeei_contig55864.1.1 vs. uniprot
Match: A0A1M6YIB5_9PROT (Uncharacterized conserved protein YdbL, DUF1318 family n=4 Tax=Nitrosospira TaxID=35798 RepID=A0A1M6YIB5_9PROT)

HSP 1 Score: 149 bits (375), Expect = 6.210e-44
Identity = 71/116 (61.21%), Postives = 88/116 (75.86%), Query Frame = 1 
Query:    1 ANLEVSTPAIAALQGSFQRRHGGLAPFYGNGAVGLTNNGLIAWRDINVVSSAQYQQVNALIIAENEDRNALYREIARANGRPEWESQIRATFSLRWIDMAPRGLYYQNSFGAWIRK 348
            AN+E+ TPAI++L+ S Q+RH  L P+Y  GAVGLT +GL+A RD N +  A  Q VNALI AEN+DRNALYREIARAN  PEWE+ IRATF  RWID+A  G +YQ + G+W+RK
Sbjct:   25 ANIEIDTPAISSLRQSMQQRHSQLQPYYERGAVGLTRDGLVAMRDANALPLAARQPVNALIAAENQDRNALYREIARANSHPEWEADIRATFGQRWIDLARPGWWYQAANGSWVRK 140
[Close]
BLAST of mRNA_P-wetherbeei_contig55864.1.1 vs. uniprot
Match: A0A1F4DDJ1_9PROT (DUF1318 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13 TaxID=1797495 RepID=A0A1F4DDJ1_9PROT)

HSP 1 Score: 149 bits (375), Expect = 6.400e-44
Identity = 74/116 (63.79%), Postives = 87/116 (75.00%), Query Frame = 1 
Query:    1 ANLEVSTPAIAALQGSFQRRHGGLAPFYGNGAVGLTNNGLIAWRDINVVSSAQYQQVNALIIAENEDRNALYREIARANGRPEWESQIRATFSLRWIDMAPRGLYYQNSFGAWIRK 348
            ANLE++TPAIAAL+ S Q+RH  LA FY  GAVGLT +G IA RD + V  AQ Q  N+L+ AEN+DR ALYREIARAN  PEWE+ IRATF+ RWI  A  G YYQN+ GAW+RK
Sbjct:   26 ANLEINTPAIAALKASMQQRHAQLAGFYARGAVGLTRDGGIALRDASAVQLAQRQLANSLVAAENQDRAALYREIARANSHPEWENDIRATFAQRWIGNARSGWYYQNAAGAWVRK 141
[Close]
BLAST of mRNA_P-wetherbeei_contig55864.1.1 vs. uniprot
Match: A0A2T5K3K7_9PROT (Uncharacterized protein n=1 Tax=Nitrosospira sp. Nsp2 TaxID=136548 RepID=A0A2T5K3K7_9PROT)

HSP 1 Score: 149 bits (375), Expect = 6.600e-44
Identity = 70/116 (60.34%), Postives = 89/116 (76.72%), Query Frame = 1 
Query:    1 ANLEVSTPAIAALQGSFQRRHGGLAPFYGNGAVGLTNNGLIAWRDINVVSSAQYQQVNALIIAENEDRNALYREIARANGRPEWESQIRATFSLRWIDMAPRGLYYQNSFGAWIRK 348
            AN+E+ TPAIA+L+   Q+RH  L P+Y  GA+GLT +GLIA RD N +  +  Q VNALI AEN+DRNALYREIARANG PEWE+ IR+TF+ RWI++A  G +YQ+  GAW+RK
Sbjct:   27 ANIEIDTPAIASLKQRMQQRHNQLEPYYSRGAIGLTRDGLIAMRDANELPLSARQTVNALIAAENQDRNALYREIARANGHPEWETDIRSTFAQRWIELARPGWWYQSPSGAWVRK 142
[Close]
BLAST of mRNA_P-wetherbeei_contig55864.1.1 vs. uniprot
Match: A0A1W6STP8_9PROT (DUF1318 domain-containing protein n=4 Tax=Nitrosospira TaxID=35798 RepID=A0A1W6STP8_9PROT)

HSP 1 Score: 145 bits (367), Expect = 1.020e-42
Identity = 68/116 (58.62%), Postives = 88/116 (75.86%), Query Frame = 1 
Query:    1 ANLEVSTPAIAALQGSFQRRHGGLAPFYGNGAVGLTNNGLIAWRDINVVSSAQYQQVNALIIAENEDRNALYREIARANGRPEWESQIRATFSLRWIDMAPRGLYYQNSFGAWIRK 348
            A++E++TPAIA+L+ S Q+RH  L P+Y  GAVGLT +G IA RD N +  +  Q VNALI +EN+DRNALYREIARANG PEWE  IR+TF  RWI++A  G +YQ + G+W+RK
Sbjct:   25 ADIEINTPAIASLKQSMQQRHSQLEPYYARGAVGLTRDGFIAMRDANALPLSARQPVNALIASENQDRNALYREIARANGHPEWEGDIRSTFGQRWIELARAGWWYQAASGSWVRK 140
[Close]
BLAST of mRNA_P-wetherbeei_contig55864.1.1 vs. uniprot
Match: A0A1I5CVR5_9PROT (Uncharacterized conserved protein YdbL, DUF1318 family n=2 Tax=Nitrosospira briensis TaxID=35799 RepID=A0A1I5CVR5_9PROT)

HSP 1 Score: 145 bits (367), Expect = 1.090e-42
Identity = 69/116 (59.48%), Postives = 86/116 (74.14%), Query Frame = 1 
Query:    1 ANLEVSTPAIAALQGSFQRRHGGLAPFYGNGAVGLTNNGLIAWRDINVVSSAQYQQVNALIIAENEDRNALYREIARANGRPEWESQIRATFSLRWIDMAPRGLYYQNSFGAWIRK 348
            AN+E+ TPAIA+L+ S Q+RH  L P+Y  GAVGLT++GLIA  D N +  +  Q VN LI AEN+DRNALYREIARAN  PEWE  IR+TF  RWI +A  G +YQN+ G+W+RK
Sbjct:   27 ANIEIDTPAIASLKQSMQQRHKQLEPYYSRGAVGLTHDGLIAMHDANALPLSARQPVNTLIAAENQDRNALYREIARANSHPEWEGDIRSTFGQRWIQLARPGWWYQNASGSWVRK 142
[Close]
BLAST of mRNA_P-wetherbeei_contig55864.1.1 vs. uniprot
Match: A0A2R5F1E9_9PROT (Cellobiose phosphorylase n=1 Tax=Novimethylophilus kurashikiensis TaxID=1825523 RepID=A0A2R5F1E9_9PROT)

HSP 1 Score: 145 bits (366), Expect = 1.360e-42
Identity = 68/116 (58.62%), Postives = 89/116 (76.72%), Query Frame = 1 
Query:    1 ANLEVSTPAIAALQGSFQRRHGGLAPFYGNGAVGLTNNGLIAWRDINVVSSAQYQQVNALIIAENEDRNALYREIARANGRPEWESQIRATFSLRWIDMAPRGLYYQNSFGAWIRK 348
            A+LE++TPAIA+L+GS Q RHG LA FY +GA+GLT +GLIA RD N V  +Q Q VN+L+ AEN DRN+LY+EIA ANG PEWES++R TF+ RW+  A  G +YQ+  G+W +K
Sbjct:   23 ADLEINTPAIASLKGSMQARHGQLAGFYASGAIGLTRDGLIAVRDANAVPLSQRQNVNSLVSAENGDRNSLYKEIAAANGHPEWESEVRNTFAQRWVQKAQGGWWYQDQSGSWAKK 138
[Close]
BLAST of mRNA_P-wetherbeei_contig55864.1.1 vs. uniprot
Match: A0A2H0G290_9PROT (DUF1318 domain-containing protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2H0G290_9PROT)

HSP 1 Score: 145 bits (366), Expect = 1.450e-42
Identity = 69/116 (59.48%), Postives = 86/116 (74.14%), Query Frame = 1 
Query:    1 ANLEVSTPAIAALQGSFQRRHGGLAPFYGNGAVGLTNNGLIAWRDINVVSSAQYQQVNALIIAENEDRNALYREIARANGRPEWESQIRATFSLRWIDMAPRGLYYQNSFGAWIRK 348
            A+LE++TPAI +L+ + Q+RH  LA  Y +GAVGLT NGL+A RD  +V  AQ Q VN L+ AEN+DR ALYREIARANG PEWE +IRATF+ RW+  A  G +YQN  G W+RK
Sbjct:   25 ADLEINTPAIGSLKTTMQQRHDQLAGHYASGAVGLTRNGLVAVRDATLVPLAQRQAVNGLVAAENQDRQALYREIARANGHPEWEDEIRATFAQRWVQKAASGWWYQNQSGVWVRK 140
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55864.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C3NSH0_9PROT2.400e-4868.70DUF1318 domain-containing protein n=1 Tax=Betaprot... [more]
A0A1F4DQ95_9PROT4.550e-4866.38DUF1318 domain-containing protein n=1 Tax=Betaprot... [more]
A0A0S8C657_9PROT8.240e-4766.38Cellobiose phosphorylase n=1 Tax=Betaproteobacteri... [more]
A0A1M6YIB5_9PROT6.210e-4461.21Uncharacterized conserved protein YdbL, DUF1318 fa... [more]
A0A1F4DDJ1_9PROT6.400e-4463.79DUF1318 domain-containing protein n=1 Tax=Betaprot... [more]
A0A2T5K3K7_9PROT6.600e-4460.34Uncharacterized protein n=1 Tax=Nitrosospira sp. N... [more]
A0A1W6STP8_9PROT1.020e-4258.62DUF1318 domain-containing protein n=4 Tax=Nitrosos... [more]
A0A1I5CVR5_9PROT1.090e-4259.48Uncharacterized conserved protein YdbL, DUF1318 fa... [more]
A0A2R5F1E9_9PROT1.360e-4258.62Cellobiose phosphorylase n=1 Tax=Novimethylophilus... [more]
A0A2H0G290_9PROT1.450e-4259.48DUF1318 domain-containing protein n=2 Tax=Proteoba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55864contigP-wetherbeei_contig55864:3..353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog323848.Nmul_A2218
PFAMsDUF1318
Model size351
Max annot lvl28216|Betaproteobacteria
KEGG koko:K09978
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.05e-44
EggNOG OGsCOG3784@1|root,COG3784@2|Bacteria,1MYIH@1224|Proteobacteria,2VSM9@28216|Betaproteobacteria,37372@32003|Nitrosomonadales
DescriptionProtein of unknown function (DUF1318)
Cds size351
COG categoryS
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186831.1800718-CDS-P-wetherbeei_contig55864:2..3531683186831.1800718-CDS-P-wetherbeei_contig55864:2..353Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55864 3..353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55864.1.1prot_P-wetherbeei_contig55864.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55864 3..353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55864.1.1

>prot_P-wetherbeei_contig55864.1.1 ID=prot_P-wetherbeei_contig55864.1.1|Name=mRNA_P-wetherbeei_contig55864.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=117bp
ANLEVSTPAIAALQGSFQRRHGGLAPFYGNGAVGLTNNGLIAWRDINVVS
SAQYQQVNALIIAENEDRNALYREIARANGRPEWESQIRATFSLRWIDMA
PRGLYYQNSFGAWIRK*
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mRNA from alignment at P-wetherbeei_contig55864:3..353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55864.1.1 ID=mRNA_P-wetherbeei_contig55864.1.1|Name=mRNA_P-wetherbeei_contig55864.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig55864:3..353+ (Phaeothamnion wetherbeei SAG_119_79)
GCAAACCTCGAAGTCAGCACGCCCGCAATCGCGGCGTTGCAAGGAAGTTT
TCAGAGGCGGCACGGGGGGTTAGCGCCGTTTTATGGCAACGGTGCAGTGG
GACTAACGAACAATGGCCTTATTGCATGGCGGGACATCAATGTTGTGTCG
TCCGCGCAGTACCAGCAAGTCAATGCTCTAATCATTGCAGAGAACGAGGA
TCGCAATGCACTCTACCGAGAAATAGCGCGCGCGAACGGTAGGCCTGAAT
GGGAAAGTCAAATTCGCGCTACGTTCAGTCTACGGTGGATTGATATGGCG
CCGCGAGGCCTGTATTACCAGAACAGTTTTGGTGCGTGGATACGTAAATG
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55864:3..353+

>mRNA_P-wetherbeei_contig55864.1.1 ID=mRNA_P-wetherbeei_contig55864.1.1|Name=mRNA_P-wetherbeei_contig55864.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig55864:3..353+ (Phaeothamnion wetherbeei SAG_119_79)
GCAAACCTCGAAGTCAGCACGCCCGCAATCGCGGCGTTGCAAGGAAGTTT
TCAGAGGCGGCACGGGGGGTTAGCGCCGTTTTATGGCAACGGTGCAGTGG
GACTAACGAACAATGGCCTTATTGCATGGCGGGACATCAATGTTGTGTCG
TCCGCGCAGTACCAGCAAGTCAATGCTCTAATCATTGCAGAGAACGAGGA
TCGCAATGCACTCTACCGAGAAATAGCGCGCGCGAACGGTAGGCCTGAAT
GGGAAAGTCAAATTCGCGCTACGTTCAGTCTACGGTGGATTGATATGGCG
CCGCGAGGCCTGTATTACCAGAACAGTTTTGGTGCGTGGATACGTAAATG
A
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