prot_P-wetherbeei_contig55839.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig55839.1.1
Unique Name	prot_P-wetherbeei_contig55839.1.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	127

Homology

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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: A0A838GFC2_9CHLR (30S ribosomal protein S4 n=2 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A838GFC2_9CHLR)

HSP 1 Score: 214 bits (545), Expect = 2.320e-68
Identity = 106/127 (83.46%), Postives = 116/127 (91.34%), Query Frame = 0

Query:    1 NFVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQRRRRRPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAKHATI 127
            NF GPKVKKSR+LGIALTPKAQKY+KNRPYPPGQHGQRRRRRPSDYGVQLLEKQRLRFQYN+SE QL++AYK A R+ G TGDNLVQLLE+R+D LVLRAG APTIYAARQYVTHGHF ++ K ATI
Sbjct:   34 NFTGPKVKKSRALGIALTPKAQKYMKNRPYPPGQHGQRRRRRPSDYGVQLLEKQRLRFQYNVSESQLSKAYKMAARMPGSTGDNLVQLLESRMDCLVLRAGLAPTIYAARQYVTHGHFRLNGKKATI 160

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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: A0A6J4UZD5_9CHLR (30S ribosomal protein S4 n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4UZD5_9CHLR)

HSP 1 Score: 187 bits (474), Expect = 5.180e-58
Identity = 92/127 (72.44%), Postives = 108/127 (85.04%), Query Frame = 0

Query:    1 NFVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQRRRRRPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAKHATI 127
            NF GPKVKKSR+LG+ALTPKAQKY++NRPY PGQHGQ RRRR SDYG QLLEKQRLRFQYN+SEK L  AY +  +  GPTGD L+Q LE+RLD++VLRAG APTI+AARQ+VTHGHF V+ + A+I
Sbjct:    2 NFTGPKVKKSRALGVALTPKAQKYMRNRPYGPGQHGQNRRRRRSDYGTQLLEKQRLRFQYNVSEKYLQGAYAKVTKRKGPTGDLLLQFLESRLDSIVLRAGLAPTIFAARQFVTHGHFRVNGRKASI 128

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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: A0A7V5SKF7_9BACT (30S ribosomal protein S4 n=3 Tax=Bacteria TaxID=2 RepID=A0A7V5SKF7_9BACT)

HSP 1 Score: 171 bits (433), Expect = 9.270e-52
Identity = 88/123 (71.54%), Postives = 102/123 (82.93%), Query Frame = 0

Query:    2 FVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHG-QRRRRRPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAK 123
            + GPKVK SR LGIALTPKAQKY++ +PYPPGQHG ++RR + SDYG QLLEKQRLRFQYN+ E+QL R Y+EA R+ G T DNL+QLLE RLDALVLRAGFA TIYAARQYV HGH  V+ +
Sbjct:    3 YTGPKVKLSRKLGIALTPKAQKYMERKPYPPGQHGPEKRRAKLSDYGRQLLEKQRLRFQYNVHERQLRRYYEEASRMPGNTADNLIQLLERRLDALVLRAGFARTIYAARQYVRHGHIEVNGR 125

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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: A0A3M1LP57_9BACT (30S ribosomal protein S4 (Fragment) n=1 Tax=Chlorobi bacterium TaxID=2268192 RepID=A0A3M1LP57_9BACT)

HSP 1 Score: 166 bits (420), Expect = 3.060e-50
Identity = 85/128 (66.41%), Postives = 101/128 (78.91%), Query Frame = 0

Query:    1 NFVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQ-RRRRRPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAKHATI 127
            N+ GPKVK SR LG A+TPKA+KY+  +PYPPGQHG  +RR + SDYG QLLEKQRLR QYN+ E+Q+   Y+EA R+AG TGDNLV LLE+RLDALV RAGFAP+IYAARQYV HGH  V+ +   I
Sbjct:    2 NYTGPKVKLSRKLGFAMTPKARKYMDRKPYPPGQHGAVKRRAKLSDYGRQLLEKQRLRLQYNVHERQMQNYYREASRMAGNTGDNLVALLESRLDALVYRAGFAPSIYAARQYVRHGHIEVNGQKVDI 129

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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: A0A3E0NV08_9BACT (30S ribosomal protein S4 n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3E0NV08_9BACT)

HSP 1 Score: 166 bits (419), Expect = 1.160e-49
Identity = 83/126 (65.87%), Postives = 100/126 (79.37%), Query Frame = 0

Query:    2 FVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQRRRRRPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAKHATI 127
            F GPKVK SR LG+AL+ KAQ+Y++ R YPPG HG +RRRR S+YG QLLEKQRLRFQYNISE+QL   + ++ R+ G TGDNLVQLLETRLDA VLR GFAPTI+AARQ+V HGH  V+ +   +
Sbjct:    3 FNGPKVKASRKLGVALSDKAQRYLERRSYPPGMHGMKRRRRQSNYGRQLLEKQRLRFQYNISERQLRNYFDKSNRMRGVTGDNLVQLLETRLDAFVLRCGFAPTIFAARQFVGHGHLQVNGQRVNV 128

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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: A0A2H5XU87_9BACT (30S ribosomal protein S4 n=4 Tax=Bacteria TaxID=2 RepID=A0A2H5XU87_9BACT)

HSP 1 Score: 166 bits (420), Expect = 2.120e-49
Identity = 85/128 (66.41%), Postives = 101/128 (78.91%), Query Frame = 0

Query:    1 NFVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQ-RRRRRPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAKHATI 127
            N+ GPKVK SR LG A+TPKA+KY+  +PYPPGQHG  +RR + SDYG QLLEKQRLR QYN+ E+Q+   Y+EA R+AG TGDNLV LLE+RLDALV RAGFAP+IYAARQYV HGH  V+ +   I
Sbjct:   33 NYTGPKVKLSRKLGFAMTPKARKYMDRKPYPPGQHGPVKRRAKLSDYGRQLLEKQRLRLQYNVHERQMQNYYREASRMAGNTGDNLVALLESRLDALVYRAGFAPSIYAARQYVRHGHIEVNGQKVDI 160

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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: UPI00046D3E06 (30S ribosomal protein S4 n=1 Tax=Haloglycomyces albus TaxID=526067 RepID=UPI00046D3E06)

HSP 1 Score: 161 bits (408), Expect = 6.100e-48
Identity = 86/123 (69.92%), Postives = 98/123 (79.67%), Query Frame = 0

Query:    5 PKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQRRRRRPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAKHATI 127
            PKVK SRSLGIALTPKA KY++ RPYPPGQHG R RR+ SDY  QL EKQRLR QYNISE+QL RAY+EA R +G TG+ L+QLLE+RLDA VLRAG A TIY ARQ+V HGHF V+ +   I
Sbjct:    6 PKVKLSRSLGIALTPKAAKYMERRPYPPGQHG-RGRRKESDYKTQLTEKQRLRAQYNISERQLRRAYEEATRKSGKTGEVLIQLLESRLDAFVLRAGLARTIYQARQFVNHGHFTVNGRKVDI 127

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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: A0A7C4K8U8_9BACT (30S ribosomal protein S4 n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7C4K8U8_9BACT)

HSP 1 Score: 159 bits (403), Expect = 3.200e-47
Identity = 83/128 (64.84%), Postives = 99/128 (77.34%), Query Frame = 0

Query:    1 NFVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQ-RRRRRPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAKHATI 127
            N+ GPKVK SR L + LTPK+QK    +PYPPGQHG  +RR + SDYG QL EKQRLR QYNISEKQ+ + YKEA RL G T D LVQLLE+RLDA+V R+GFA +IYAARQ+V+HGH LV++K   I
Sbjct:    2 NYTGPKVKISRKLDLELTPKSQKVKARKPYPPGQHGNLKRRAKQSDYGKQLFEKQRLRLQYNISEKQMQKYYKEAARLVGNTADLLVQLLESRLDAIVYRSGFARSIYAARQFVSHGHILVNSKRVNI 129

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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: A0A7C3IT28_9BACT (30S ribosomal protein S4 n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7C3IT28_9BACT)

HSP 1 Score: 158 bits (400), Expect = 9.110e-47
Identity = 77/128 (60.16%), Postives = 101/128 (78.91%), Query Frame = 0

Query:    1 NFVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQRRRR-RPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAKHATI 127
            N+ GPKVK SR LG+ LT K++KY + +PYPPGQHGQ ++R + SDYG QLLEKQRLR Q+N+SEKQ+   YK+A RL G TGD L+QL+E RLD+++ RAG AP+IYAARQY++HGH LV+ +   +
Sbjct:    2 NYTGPKVKISRKLGLELTVKSRKYTEKKPYPPGQHGQMKKRAKQSDYGRQLLEKQRLRLQFNLSEKQMRNYYKKATRLTGNTGDLLIQLIEQRLDSVLTRAGLAPSIYAARQYISHGHILVNGRRVNV 129

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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: A0A6P1M6K6_9BACT (30S ribosomal protein S4 n=1 Tax=Tichowtungia aerotolerans TaxID=2697043 RepID=A0A6P1M6K6_9BACT)

HSP 1 Score: 157 bits (397), Expect = 2.600e-46
Identity = 80/127 (62.99%), Postives = 101/127 (79.53%), Query Frame = 0

Query:    2 FVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQRRRR-RPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAKHATI 127
            + GPK+KKSR LG+ALTPKA+KY++ RP+PPGQHG  RRR + SDYG QL+EKQRL++QYN+SEKQ+ + Y+ A R  G T D L+QL+ETRLDALVLR+GFA +IY ARQ V+H HF V+ K   I
Sbjct:    3 YTGPKIKKSRRLGVALTPKAEKYLERRPHPPGQHGPSRRRGKLSDYGKQLIEKQRLQYQYNLSEKQVRKYYQAASRKQGNTSDILLQLIETRLDALVLRSGFARSIYQARQLVSHAHFRVNGKKCNI 129

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A838GFC2_9CHLR	2.320e-68	83.46	30S ribosomal protein S4 n=2 Tax=Chloroflexia bact...	[more]
A0A6J4UZD5_9CHLR	5.180e-58	72.44	30S ribosomal protein S4 n=1 Tax=uncultured Thermo...	[more]
A0A7V5SKF7_9BACT	9.270e-52	71.54	30S ribosomal protein S4 n=3 Tax=Bacteria TaxID=2 ...	[more]
A0A3M1LP57_9BACT	3.060e-50	66.41	30S ribosomal protein S4 (Fragment) n=1 Tax=Chloro...	[more]
A0A3E0NV08_9BACT	1.160e-49	65.87	30S ribosomal protein S4 n=1 Tax=Acidobacteria bac...	[more]
A0A2H5XU87_9BACT	2.120e-49	66.41	30S ribosomal protein S4 n=4 Tax=Bacteria TaxID=2 ...	[more]
UPI00046D3E06	6.100e-48	69.92	30S ribosomal protein S4 n=1 Tax=Haloglycomyces al...	[more]
A0A7C4K8U8_9BACT	3.200e-47	64.84	30S ribosomal protein S4 n=1 Tax=Ignavibacteria ba...	[more]
A0A7C3IT28_9BACT	9.110e-47	60.16	30S ribosomal protein S4 n=1 Tax=Ignavibacteria ba...	[more]
A0A6P1M6K6_9BACT	2.600e-46	62.99	30S ribosomal protein S4 n=1 Tax=Tichowtungia aero...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001912	Ribosomal protein S4/S9, N-terminal	SMART	SM01390	Ribosomal_S4_2	coord: 1..90 e-value: 1.6E-38 score: 144.0
IPR001912	Ribosomal protein S4/S9, N-terminal	PFAM	PF00163	Ribosomal_S4	coord: 4..90 e-value: 9.1E-25 score: 87.4
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 98..127 e-value: 5.7E-9 score: 38.0
None	No IPR available	GENE3D	1.10.1050.10	Ribosomal Protein S4 Delta 41; Chain A, domain 1	coord: 1..97 e-value: 3.2E-32 score: 113.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..46
None	No IPR available	PROSITE	PS50889	S4	coord: 91..120 score: 9.036184
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 2..126
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 92..120 e-value: 1.5E-7 score: 31.0
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 92..120 e-value: 1.05542E-6 score: 41.4662
IPR005709	Ribosomal protein S4, bacterial-type	PANTHER	PTHR11831:SF4	37S RIBOSOMAL PROTEIN NAM9, MITOCHONDRIAL	coord: 20..123
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 20..123

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig55839	contig	P-wetherbeei_contig55839:3..383 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig55839.1.1	mRNA_P-wetherbeei_contig55839.1.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig55839 3..383 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig55839.1.1 ID=prot_P-wetherbeei_contig55839.1.1|Name=mRNA_P-wetherbeei_contig55839.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
NFVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQRRRRRPSDYGVQL
LEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRA
GFAPTIYAARQYVTHGHFLVHAKHATI

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001912	Ribosomal_S4/S9_N
IPR036986	S4_RNA-bd_sf
IPR002942	S4_RNA-bd
IPR005709	Ribosomal_S4_bac-type
IPR022801	Ribosomal_S4/S9