mRNA_P-wetherbeei_contig55839.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55839.1.1
Unique NamemRNA_P-wetherbeei_contig55839.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: A0A838GFC2_9CHLR (30S ribosomal protein S4 n=2 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A838GFC2_9CHLR)

HSP 1 Score: 214 bits (545), Expect = 2.320e-68
Identity = 106/127 (83.46%), Postives = 116/127 (91.34%), Query Frame = 1 
Query:    1 NFVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQRRRRRPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAKHATI 381
            NF GPKVKKSR+LGIALTPKAQKY+KNRPYPPGQHGQRRRRRPSDYGVQLLEKQRLRFQYN+SE QL++AYK A R+ G TGDNLVQLLE+R+D LVLRAG APTIYAARQYVTHGHF ++ K ATI
Sbjct:   34 NFTGPKVKKSRALGIALTPKAQKYMKNRPYPPGQHGQRRRRRPSDYGVQLLEKQRLRFQYNVSESQLSKAYKMAARMPGSTGDNLVQLLESRMDCLVLRAGLAPTIYAARQYVTHGHFRLNGKKATI 160
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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: A0A6J4UZD5_9CHLR (30S ribosomal protein S4 n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4UZD5_9CHLR)

HSP 1 Score: 187 bits (474), Expect = 5.180e-58
Identity = 92/127 (72.44%), Postives = 108/127 (85.04%), Query Frame = 1 
Query:    1 NFVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQRRRRRPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAKHATI 381
            NF GPKVKKSR+LG+ALTPKAQKY++NRPY PGQHGQ RRRR SDYG QLLEKQRLRFQYN+SEK L  AY +  +  GPTGD L+Q LE+RLD++VLRAG APTI+AARQ+VTHGHF V+ + A+I
Sbjct:    2 NFTGPKVKKSRALGVALTPKAQKYMRNRPYGPGQHGQNRRRRRSDYGTQLLEKQRLRFQYNVSEKYLQGAYAKVTKRKGPTGDLLLQFLESRLDSIVLRAGLAPTIFAARQFVTHGHFRVNGRKASI 128
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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: A0A7V5SKF7_9BACT (30S ribosomal protein S4 n=3 Tax=Bacteria TaxID=2 RepID=A0A7V5SKF7_9BACT)

HSP 1 Score: 171 bits (433), Expect = 9.270e-52
Identity = 88/123 (71.54%), Postives = 102/123 (82.93%), Query Frame = 1 
Query:    4 FVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHG-QRRRRRPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAK 369
            + GPKVK SR LGIALTPKAQKY++ +PYPPGQHG ++RR + SDYG QLLEKQRLRFQYN+ E+QL R Y+EA R+ G T DNL+QLLE RLDALVLRAGFA TIYAARQYV HGH  V+ +
Sbjct:    3 YTGPKVKLSRKLGIALTPKAQKYMERKPYPPGQHGPEKRRAKLSDYGRQLLEKQRLRFQYNVHERQLRRYYEEASRMPGNTADNLIQLLERRLDALVLRAGFARTIYAARQYVRHGHIEVNGR 125
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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: A0A3M1LP57_9BACT (30S ribosomal protein S4 (Fragment) n=1 Tax=Chlorobi bacterium TaxID=2268192 RepID=A0A3M1LP57_9BACT)

HSP 1 Score: 166 bits (420), Expect = 3.060e-50
Identity = 85/128 (66.41%), Postives = 101/128 (78.91%), Query Frame = 1 
Query:    1 NFVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQ-RRRRRPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAKHATI 381
            N+ GPKVK SR LG A+TPKA+KY+  +PYPPGQHG  +RR + SDYG QLLEKQRLR QYN+ E+Q+   Y+EA R+AG TGDNLV LLE+RLDALV RAGFAP+IYAARQYV HGH  V+ +   I
Sbjct:    2 NYTGPKVKLSRKLGFAMTPKARKYMDRKPYPPGQHGAVKRRAKLSDYGRQLLEKQRLRLQYNVHERQMQNYYREASRMAGNTGDNLVALLESRLDALVYRAGFAPSIYAARQYVRHGHIEVNGQKVDI 129
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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: A0A3E0NV08_9BACT (30S ribosomal protein S4 n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3E0NV08_9BACT)

HSP 1 Score: 166 bits (419), Expect = 1.160e-49
Identity = 83/126 (65.87%), Postives = 100/126 (79.37%), Query Frame = 1 
Query:    4 FVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQRRRRRPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAKHATI 381
            F GPKVK SR LG+AL+ KAQ+Y++ R YPPG HG +RRRR S+YG QLLEKQRLRFQYNISE+QL   + ++ R+ G TGDNLVQLLETRLDA VLR GFAPTI+AARQ+V HGH  V+ +   +
Sbjct:    3 FNGPKVKASRKLGVALSDKAQRYLERRSYPPGMHGMKRRRRQSNYGRQLLEKQRLRFQYNISERQLRNYFDKSNRMRGVTGDNLVQLLETRLDAFVLRCGFAPTIFAARQFVGHGHLQVNGQRVNV 128
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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: A0A2H5XU87_9BACT (30S ribosomal protein S4 n=4 Tax=Bacteria TaxID=2 RepID=A0A2H5XU87_9BACT)

HSP 1 Score: 166 bits (420), Expect = 2.120e-49
Identity = 85/128 (66.41%), Postives = 101/128 (78.91%), Query Frame = 1 
Query:    1 NFVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQ-RRRRRPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAKHATI 381
            N+ GPKVK SR LG A+TPKA+KY+  +PYPPGQHG  +RR + SDYG QLLEKQRLR QYN+ E+Q+   Y+EA R+AG TGDNLV LLE+RLDALV RAGFAP+IYAARQYV HGH  V+ +   I
Sbjct:   33 NYTGPKVKLSRKLGFAMTPKARKYMDRKPYPPGQHGPVKRRAKLSDYGRQLLEKQRLRLQYNVHERQMQNYYREASRMAGNTGDNLVALLESRLDALVYRAGFAPSIYAARQYVRHGHIEVNGQKVDI 160
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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: UPI00046D3E06 (30S ribosomal protein S4 n=1 Tax=Haloglycomyces albus TaxID=526067 RepID=UPI00046D3E06)

HSP 1 Score: 161 bits (408), Expect = 6.100e-48
Identity = 86/123 (69.92%), Postives = 98/123 (79.67%), Query Frame = 1 
Query:   13 PKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQRRRRRPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAKHATI 381
            PKVK SRSLGIALTPKA KY++ RPYPPGQHG R RR+ SDY  QL EKQRLR QYNISE+QL RAY+EA R +G TG+ L+QLLE+RLDA VLRAG A TIY ARQ+V HGHF V+ +   I
Sbjct:    6 PKVKLSRSLGIALTPKAAKYMERRPYPPGQHG-RGRRKESDYKTQLTEKQRLRAQYNISERQLRRAYEEATRKSGKTGEVLIQLLESRLDAFVLRAGLARTIYQARQFVNHGHFTVNGRKVDI 127
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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: A0A7C4K8U8_9BACT (30S ribosomal protein S4 n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7C4K8U8_9BACT)

HSP 1 Score: 159 bits (403), Expect = 3.200e-47
Identity = 83/128 (64.84%), Postives = 99/128 (77.34%), Query Frame = 1 
Query:    1 NFVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQ-RRRRRPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAKHATI 381
            N+ GPKVK SR L + LTPK+QK    +PYPPGQHG  +RR + SDYG QL EKQRLR QYNISEKQ+ + YKEA RL G T D LVQLLE+RLDA+V R+GFA +IYAARQ+V+HGH LV++K   I
Sbjct:    2 NYTGPKVKISRKLDLELTPKSQKVKARKPYPPGQHGNLKRRAKQSDYGKQLFEKQRLRLQYNISEKQMQKYYKEAARLVGNTADLLVQLLESRLDAIVYRSGFARSIYAARQFVSHGHILVNSKRVNI 129
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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: A0A7C3IT28_9BACT (30S ribosomal protein S4 n=1 Tax=Ignavibacteria bacterium TaxID=2053306 RepID=A0A7C3IT28_9BACT)

HSP 1 Score: 158 bits (400), Expect = 9.110e-47
Identity = 77/128 (60.16%), Postives = 101/128 (78.91%), Query Frame = 1 
Query:    1 NFVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQRRRR-RPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAKHATI 381
            N+ GPKVK SR LG+ LT K++KY + +PYPPGQHGQ ++R + SDYG QLLEKQRLR Q+N+SEKQ+   YK+A RL G TGD L+QL+E RLD+++ RAG AP+IYAARQY++HGH LV+ +   +
Sbjct:    2 NYTGPKVKISRKLGLELTVKSRKYTEKKPYPPGQHGQMKKRAKQSDYGRQLLEKQRLRLQFNLSEKQMRNYYKKATRLTGNTGDLLIQLIEQRLDSVLTRAGLAPSIYAARQYISHGHILVNGRRVNV 129
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BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Match: A0A6P1M6K6_9BACT (30S ribosomal protein S4 n=1 Tax=Tichowtungia aerotolerans TaxID=2697043 RepID=A0A6P1M6K6_9BACT)

HSP 1 Score: 157 bits (397), Expect = 2.600e-46
Identity = 80/127 (62.99%), Postives = 101/127 (79.53%), Query Frame = 1 
Query:    4 FVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQRRRR-RPSDYGVQLLEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRAGFAPTIYAARQYVTHGHFLVHAKHATI 381
            + GPK+KKSR LG+ALTPKA+KY++ RP+PPGQHG  RRR + SDYG QL+EKQRL++QYN+SEKQ+ + Y+ A R  G T D L+QL+ETRLDALVLR+GFA +IY ARQ V+H HF V+ K   I
Sbjct:    3 YTGPKIKKSRRLGVALTPKAEKYLERRPHPPGQHGPSRRRGKLSDYGKQLIEKQRLQYQYNLSEKQVRKYYQAASRKQGNTSDILLQLIETRLDALVLRSGFARSIYQARQLVSHAHFRVNGKKCNI 129
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55839.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A838GFC2_9CHLR2.320e-6883.4630S ribosomal protein S4 n=2 Tax=Chloroflexia bact... [more]
A0A6J4UZD5_9CHLR5.180e-5872.4430S ribosomal protein S4 n=1 Tax=uncultured Thermo... [more]
A0A7V5SKF7_9BACT9.270e-5271.5430S ribosomal protein S4 n=3 Tax=Bacteria TaxID=2 ... [more]
A0A3M1LP57_9BACT3.060e-5066.4130S ribosomal protein S4 (Fragment) n=1 Tax=Chloro... [more]
A0A3E0NV08_9BACT1.160e-4965.8730S ribosomal protein S4 n=1 Tax=Acidobacteria bac... [more]
A0A2H5XU87_9BACT2.120e-4966.4130S ribosomal protein S4 n=4 Tax=Bacteria TaxID=2 ... [more]
UPI00046D3E066.100e-4869.9230S ribosomal protein S4 n=1 Tax=Haloglycomyces al... [more]
A0A7C4K8U8_9BACT3.200e-4764.8430S ribosomal protein S4 n=1 Tax=Ignavibacteria ba... [more]
A0A7C3IT28_9BACT9.110e-4760.1630S ribosomal protein S4 n=1 Tax=Ignavibacteria ba... [more]
A0A6P1M6K6_9BACT2.600e-4662.9930S ribosomal protein S4 n=1 Tax=Tichowtungia aero... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55839contigP-wetherbeei_contig55839:3..383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1089549.AZUQ01000001_gene166
Preferred namerpsD
PFAMsRibosomal_S4,S4
Model size381
Max annot lvl201174|Actinobacteria
KEGG koko:K02986
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006417,GO:0006450,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0019222,GO:0019843,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065008,GO:0080090,GO:0097159,GO:1901363,GO:1990904,GO:2000112
Exons1
Evalue1e-48
EggNOG OGsCOG0522@1|root,COG0522@2|Bacteria,2GIRX@201174|Actinobacteria,4EYD4@85014|Glycomycetales
DescriptionOne of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
Cds size381
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186830.9317892-CDS-P-wetherbeei_contig55839:2..3831683186830.9317892-CDS-P-wetherbeei_contig55839:2..383Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55839 3..383 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55839.1.1prot_P-wetherbeei_contig55839.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55839 3..383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55839.1.1

>prot_P-wetherbeei_contig55839.1.1 ID=prot_P-wetherbeei_contig55839.1.1|Name=mRNA_P-wetherbeei_contig55839.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
NFVGPKVKKSRSLGIALTPKAQKYIKNRPYPPGQHGQRRRRRPSDYGVQL
LEKQRLRFQYNISEKQLARAYKEAVRLAGPTGDNLVQLLETRLDALVLRA
GFAPTIYAARQYVTHGHFLVHAKHATI
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mRNA from alignment at P-wetherbeei_contig55839:3..383-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55839.1.1 ID=mRNA_P-wetherbeei_contig55839.1.1|Name=mRNA_P-wetherbeei_contig55839.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig55839:3..383- (Phaeothamnion wetherbeei SAG_119_79)
AATTTCGTCGGACCCAAGGTCAAGAAGTCGCGCTCCCTCGGGATCGCGCT
GACTCCGAAGGCGCAGAAGTACATCAAGAATCGCCCGTACCCTCCCGGAC
AGCACGGCCAGCGTCGCCGCCGCCGCCCGTCGGACTACGGCGTGCAGCTG
CTCGAGAAGCAACGCCTCCGCTTCCAGTACAACATCAGCGAGAAGCAGCT
CGCCCGTGCCTACAAGGAAGCCGTCCGCCTCGCCGGCCCGACCGGTGACA
ACCTCGTGCAGCTGCTCGAGACGCGGCTCGATGCGCTCGTCCTGCGCGCC
GGGTTCGCGCCGACCATCTACGCCGCCCGCCAGTACGTGACCCACGGCCA
CTTCCTCGTCCACGCCAAGCACGCGACGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55839:3..383-

>mRNA_P-wetherbeei_contig55839.1.1 ID=mRNA_P-wetherbeei_contig55839.1.1|Name=mRNA_P-wetherbeei_contig55839.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig55839:3..383- (Phaeothamnion wetherbeei SAG_119_79)
AATTTCGTCGGACCCAAGGTCAAGAAGTCGCGCTCCCTCGGGATCGCGCT
GACTCCGAAGGCGCAGAAGTACATCAAGAATCGCCCGTACCCTCCCGGAC
AGCACGGCCAGCGTCGCCGCCGCCGCCCGTCGGACTACGGCGTGCAGCTG
CTCGAGAAGCAACGCCTCCGCTTCCAGTACAACATCAGCGAGAAGCAGCT
CGCCCGTGCCTACAAGGAAGCCGTCCGCCTCGCCGGCCCGACCGGTGACA
ACCTCGTGCAGCTGCTCGAGACGCGGCTCGATGCGCTCGTCCTGCGCGCC
GGGTTCGCGCCGACCATCTACGCCGCCCGCCAGTACGTGACCCACGGCCA
CTTCCTCGTCCACGCCAAGCACGCGACGATC
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