mRNA_P-wetherbeei_contig55805.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55805.1.1
Unique NamemRNA_P-wetherbeei_contig55805.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55805.1.1 vs. uniprot
Match: UPI001C72B0DE (signal peptidase I n=1 Tax=Oscillochloris sp. ZM17-4 TaxID=2866714 RepID=UPI001C72B0DE)

HSP 1 Score: 66.2 bits (160), Expect = 1.380e-9
Identity = 50/172 (29.07%), Postives = 85/172 (49.42%), Query Frame = 1 
Query:    1 PHVTVAGRVDGVPVSTAFTPRFGLRLDGVRLAPAPTADGGPAHLEESTSGSIGAERPARVGVGPLAAPVEP--ARRIGLFGAEAALGLAMMIGLPMLVVARRSEAAMIRLRLGVRLVEVADLPGAPVAS-VDLQRMADLVRIADRCDQAIMVSERQEGCRYAVVGDGVLYRY 507
            P +++ G + G P+  +F P+   RL+ V+L      D G   L+ +  G++   R     + PL   ++   AR+ GL  A  +LGLA ++GLP+L    + E A I++R G ++V++A  P    A  V +  +  L ++A+R    I+     +  RY V    V Y Y
Sbjct:  335 PRISIEGALGGEPLHDSFAPKMEFRLNEVQLQLI-VGDAGKDLLQPAQEGALKRTRSEPSTISPLGLTLDVSLARQAGLIAAAISLGLAAIVGLPLLRAGGQGEQARIQMRYGAQIVDLAGPPDMRAARLVQIGSIEGLAKLAERHGALILRDRSTQPARYIVQDGAVAYVY 505
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55805.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001C72B0DE1.380e-929.07signal peptidase I n=1 Tax=Oscillochloris sp. ZM17... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55805contigP-wetherbeei_contig55805:1..510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog765420.OSCT_2561
PFAMsDUF5305,Peptidase_S24
Model size510
Max annot lvl200795|Chloroflexi
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.13e-08
EggNOG OGsCOG0681@1|root,COG0681@2|Bacteria,2G85E@200795|Chloroflexi
DescriptionFamily of unknown function (DUF5305)
Cds size510
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186830.7646751-CDS-P-wetherbeei_contig55805:0..5101683186830.7646751-CDS-P-wetherbeei_contig55805:0..510Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55805 1..510 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55805.1.1prot_P-wetherbeei_contig55805.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55805 1..510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55805.1.1

>prot_P-wetherbeei_contig55805.1.1 ID=prot_P-wetherbeei_contig55805.1.1|Name=mRNA_P-wetherbeei_contig55805.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
PHVTVAGRVDGVPVSTAFTPRFGLRLDGVRLAPAPTADGGPAHLEESTSG
SIGAERPARVGVGPLAAPVEPARRIGLFGAEAALGLAMMIGLPMLVVARR
SEAAMIRLRLGVRLVEVADLPGAPVASVDLQRMADLVRIADRCDQAIMVS
ERQEGCRYAVVGDGVLYRYV
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mRNA from alignment at P-wetherbeei_contig55805:1..510+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55805.1.1 ID=mRNA_P-wetherbeei_contig55805.1.1|Name=mRNA_P-wetherbeei_contig55805.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig55805:1..510+ (Phaeothamnion wetherbeei SAG_119_79)
CCCCACGTGACCGTGGCCGGCCGGGTGGACGGGGTCCCCGTGAGCACCGC
CTTCACGCCTCGCTTCGGCCTGCGCCTGGACGGCGTCCGCCTGGCTCCCG
CGCCGACGGCCGACGGCGGCCCGGCACACCTGGAGGAGAGCACGAGCGGC
AGCATCGGCGCCGAGCGCCCGGCCCGGGTCGGGGTGGGCCCCCTCGCCGC
CCCGGTGGAGCCGGCCCGCCGCATCGGGCTCTTCGGGGCCGAGGCCGCCC
TCGGGCTGGCGATGATGATCGGCCTGCCCATGCTGGTGGTGGCGCGACGC
TCCGAGGCGGCGATGATCCGCCTGCGCCTCGGCGTACGGCTGGTGGAGGT
GGCCGATCTCCCGGGCGCTCCCGTGGCGAGCGTCGACCTCCAGCGGATGG
CCGACCTGGTGCGCATCGCCGATCGCTGCGACCAGGCGATCATGGTGTCC
GAGCGCCAGGAGGGCTGCCGCTACGCGGTGGTGGGCGACGGGGTGCTCTA
CCGCTACGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55805:1..510+

>mRNA_P-wetherbeei_contig55805.1.1 ID=mRNA_P-wetherbeei_contig55805.1.1|Name=mRNA_P-wetherbeei_contig55805.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig55805:1..510+ (Phaeothamnion wetherbeei SAG_119_79)
CCCCACGTGACCGTGGCCGGCCGGGTGGACGGGGTCCCCGTGAGCACCGC
CTTCACGCCTCGCTTCGGCCTGCGCCTGGACGGCGTCCGCCTGGCTCCCG
CGCCGACGGCCGACGGCGGCCCGGCACACCTGGAGGAGAGCACGAGCGGC
AGCATCGGCGCCGAGCGCCCGGCCCGGGTCGGGGTGGGCCCCCTCGCCGC
CCCGGTGGAGCCGGCCCGCCGCATCGGGCTCTTCGGGGCCGAGGCCGCCC
TCGGGCTGGCGATGATGATCGGCCTGCCCATGCTGGTGGTGGCGCGACGC
TCCGAGGCGGCGATGATCCGCCTGCGCCTCGGCGTACGGCTGGTGGAGGT
GGCCGATCTCCCGGGCGCTCCCGTGGCGAGCGTCGACCTCCAGCGGATGG
CCGACCTGGTGCGCATCGCCGATCGCTGCGACCAGGCGATCATGGTGTCC
GAGCGCCAGGAGGGCTGCCGCTACGCGGTGGTGGGCGACGGGGTGCTCTA
CCGCTACGTC
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