mRNA_P-wetherbeei_contig125.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig125.2.1
Unique NamemRNA_P-wetherbeei_contig125.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig125.2.1 vs. uniprot
Match: A0A6H5K3L9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3L9_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 7.910e-70
Identity = 116/168 (69.05%), Postives = 126/168 (75.00%), Query Frame = 1
Query:   10 QQRVPR-CETLLQPCLTPDGLEVSLHTCPRALLRELRYVFSVREDLAQCLAIPTNQHAVMDLVNVGDNVESEKDKLLNVFMKFARPLCDAIRAEGYWADYIDPCSGLPMLTTEGNKVYSEVEGMQALMQYPVINAGGCKVLLHPAWGSAVYPATIFTTAPRGVALRLL 510
            +QR  R C TL  P + PDGLEVSLHTCPRALLREL +VF    DL  CLAIPTNQ A MDLV +GD VE+EKD LLN F  FA  LC  IR  GYWADYIDPCSGLPML+  G KVYSEVEGMQ L+QY V+NAG CKVLLHP WGSAVYPA++F TAP     RLL
Sbjct:    4 RQRTQRGCITLQPPRMMPDGLEVSLHTCPRALLRELDHVFP-GVDLDACLAIPTNQKAGMDLVAMGDTVETEKDVLLNSFASFASGLCKQIREAGYWADYIDPCSGLPMLSG-GTKVYSEVEGMQLLLQYQVMNAGNCKVLLHPQWGSAVYPASLFCTAPSDFVQRLL 169          
BLAST of mRNA_P-wetherbeei_contig125.2.1 vs. uniprot
Match: A0A7S2FSY7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FSY7_9STRA)

HSP 1 Score: 207 bits (526), Expect = 8.600e-65
Identity = 97/158 (61.39%), Postives = 122/158 (77.22%), Query Frame = 1
Query:   37 LLQPCLTPDGLEVSLHTCPRALLRELRYVFSVREDLAQCLAIPTNQHAVMDLVNVGDNVESEKDKLLNVFMKFARPLCDAIRAEGYWADYIDPCSGLPMLTTEGNKVYSEVEGMQALMQYPVINAGGCKVLLHPAWGSAVYPATIFTTAPRGVALRLL 510
            L++P +   GLEVS+  CP+A+ REL++VF+ +      +AIPTNQH+ MDLVNVGD+VE EKD+ LNVFM F + +C+ +R+ GYWADYIDPCSGLPMLT   NKVYSEV+GMQ LM YP++NA  CK+LLHP WGSAVYPAT+FT AP     +LL
Sbjct:   39 LIKPRMVARGLEVSVCQCPKAMRRELKHVFTGKTVTDDWIAIPTNQHSEMDLVNVGDDVEFEKDRCLNVFMDFGKAICEQLRSCGYWADYIDPCSGLPMLTPNCNKVYSEVDGMQMLMHYPIMNAAMCKILLHPKWGSAVYPATVFTDAPFSAISQLL 196          
BLAST of mRNA_P-wetherbeei_contig125.2.1 vs. uniprot
Match: A0A7S2CG30_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG30_9STRA)

HSP 1 Score: 201 bits (511), Expect = 3.090e-63
Identity = 96/166 (57.83%), Postives = 122/166 (73.49%), Query Frame = 1
Query:   10 QQRVPRCETLLQPCLTPDGLEVSLHTCPRALLRELRYVFSVREDLAQCLAIPTNQHAVMDLVNVGDNVESEKDKLLNVFMKFARPLCDAIRAEGYWADYIDPCSGLPMLTTEGNKVYSEVEGMQALMQYPVINAGGCKVLLHPAWGSAVYPATIFTTAPRGVALRL 507
            Q++  +   ++ PC   +G EVS+  CP+  LRE+R++F   +     LA+PT QH+VMDLVNVGD+VESEKD+ L  FM+  + LC  I+A G+WADYIDPCSGLPM+T + NKVYSEV+GMQ L+QY V+NAG CKVLLHP WG AVYPAT+FT AP  V L L
Sbjct:   10 QRKTKQSNVVVGPCPIKNGTEVSVCRCPKQFLREIRHIFPGLDIDESLLALPTAQHSVMDLVNVGDDVESEKDRCLIQFMELGKSLCLEIQARGHWADYIDPCSGLPMMTPDCNKVYSEVDGMQMLLQYQVMNAGPCKVLLHPRWGGAVYPATMFTNAPEDVVLEL 175          
BLAST of mRNA_P-wetherbeei_contig125.2.1 vs. uniprot
Match: A0A7S3XWY3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWY3_HETAK)

HSP 1 Score: 198 bits (503), Expect = 8.490e-62
Identity = 94/170 (55.29%), Postives = 123/170 (72.35%), Query Frame = 1
Query:    1 MPPQQRVPRCETLLQPCLTPDGLEVSLHTCPRALLRELRYVFSVREDLAQCLAIPTNQHAVMDLVNVGDNVESEKDKLLNVFMKFARPLCDAIRAEGYWADYIDPCSGLPMLTTEGNKVYSEVEGMQALMQYPVINAGGCKVLLHPAWGSAVYPATIFTTAPRGVALRLL 510
            +P   R      L  P +T DGLEVS+H  P+AL+REL+++F  +   + CLAIPT Q +  DLVN+G++VE EKD+ LNVF  +AR +C+ +  +G+WAD+IDPCSGLPML+   N VYSEVEGMQ L++Y V+NAG C+VLLHP WGSAVYPAT+FTTAP      +L
Sbjct:    7 LPASTRQREQHMLQPPRMTKDGLEVSVHIAPKALIRELKFIFRDKSFESGCLAIPTCQKSQEDLVNMGEDVEFEKDRCLNVFSDWARHVCERLATQGHWADFIDPCSGLPMLSPNNNSVYSEVEGMQLLLRYSVLNAGMCRVLLHPVWGSAVYPATLFTTAPHEAVAEVL 176          
BLAST of mRNA_P-wetherbeei_contig125.2.1 vs. uniprot
Match: A0A835Z3S3_9STRA (Methylmalonic aciduria and homocystinuria type D protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3S3_9STRA)

HSP 1 Score: 195 bits (496), Expect = 3.990e-61
Identity = 97/149 (65.10%), Postives = 116/149 (77.85%), Query Frame = 1
Query:   67 LEVSLHTCPRALLRELRYVF-SVREDLAQCLAIPTNQHAVMDLVNVGDNVESEKDKLLNVFMKFARPLCDAIRAEGYWADYIDPCSGLPMLTTEGNKVYSEVEGMQALMQYPVINAGGCKVLLHPAWGSAVYPATIFTTAPRGVALRLL 510
            ++VS+HTCPRAL REL +VF     DL  CLA+PTNQ A  DLVN+G +V+ EKD+LLNVF+ FA  LC  +R +G+WADYIDPCSGLPML+  GNKVYSEVEGMQ L+QY V+NAG C+VLLHP WGS VYPA+ FTTAP     R+L
Sbjct:    1 MQVSVHTCPRALQRELTHVFRGTGVDLTGCLAVPTNQKAGTDLVNMGSDVDIEKDRLLNVFVDFAAWLCSTLREQGFWADYIDPCSGLPMLSG-GNKVYSEVEGMQLLLQYQVMNAGMCRVLLHPTWGSHVYPASCFTTAPIEAVERVL 148          
BLAST of mRNA_P-wetherbeei_contig125.2.1 vs. uniprot
Match: A0A7S2Y0K1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0K1_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.660e-59
Identity = 94/151 (62.25%), Postives = 112/151 (74.17%), Query Frame = 1
Query:   37 LLQPCLTPDGLEVSLHTCPRALLRELRYVFSVREDLAQ-CLAIPTNQHAVMDLVNVGDNVESEKDKLLNVFMKFARPLCDAIRAEGYWADYIDPCSGLPMLTTEGNKVYSEVEGMQALMQYPVINAGGCKVLLHPAWGSAVYPATIFTTAP 486
            L  P LT D +EVS+H  PRALL ELR+VF  R   ++ CLA+PT Q +  DLVN GD VE EKD+ LNVF  FAR +C+ + A G+WADYIDPCSGLPM+  E N V+SEVE MQ L+ Y V+NAG CKVLLHP WGS+VYPAT+FT AP
Sbjct:    9 LQSPRLTGDSMEVSVHIAPRALLSELRHVFPNRSLYSEGCLAVPTLQQSTQDLVNWGDEVELEKDRCLNVFSSFARTVCERLIAAGHWADYIDPCSGLPMIERESNSVFSEVECMQVLLHYRVLNAGMCKVLLHPTWGSSVYPATLFTQAP 159          
BLAST of mRNA_P-wetherbeei_contig125.2.1 vs. uniprot
Match: A0A7S3PZ89_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZ89_9STRA)

HSP 1 Score: 188 bits (478), Expect = 6.830e-58
Identity = 99/173 (57.23%), Postives = 117/173 (67.63%), Query Frame = 1
Query:   37 LLQPCLTPDGLEVSLHTCPRALLRELRYVF---------------SVREDLAQCLAIPTNQHAVMDLVNVGDNVESEKDKLLNVFMKFARPLCDAIRAEGYWADYIDPCSGLPMLTTEGNKVYSEVEGMQALMQYPVINAGGCKVLLHPAWGSAVYPATIFTTAPRGVALRLL 510
            LLQ   T +G+E SLH  PR LLRE R+VF               + RE+L   LAIPTNQ A  DLV +GD++E EKD+LLNVF+ F R LC+ IR  GYWAD+IDPCSGLPM+T   NKVYSEV+GM+ L+ Y   NAG CK+L HPAWGSAVYPATIF   P  VA  +L
Sbjct:   22 LLQKQGTDNGIECSLHHLPRPLLREFRHVFQDEYLNQPRRLDGKVNPREELL-LLAIPTNQRAREDLVAIGDHIEEEKDRLLNVFISFGRDLCERIRGFGYWADFIDPCSGLPMMTQNCNKVYSEVDGMECLLNYKSYNAGFCKILTHPAWGSAVYPATIFAHCPAQVASEIL 193          
BLAST of mRNA_P-wetherbeei_contig125.2.1 vs. uniprot
Match: A0A7S2LGH2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LGH2_9STRA)

HSP 1 Score: 184 bits (466), Expect = 3.860e-56
Identity = 92/157 (58.60%), Postives = 114/157 (72.61%), Query Frame = 1
Query:   61 DGLEVSLHTCPRALLRELRYVFS---VR----EDLAQCLAIPTNQHAVMDLVNVGDNVESEKDKLLNVFMKFARPLCDAIRAEGYWADYIDPCSGLPMLTTEGNKVYSEVEGMQALMQYPVINAGGCKVLLHPAWGSAVYPATIFTTAPRGVALRLL 510
            D LE SLH  P+ LLRE  +VF+   VR    +   Q LAIPTNQ A  DLV VGD++E+EKD+LLNVF+ F + +C+ +R++GYWADYIDPCSGLPM++   NKVYSEV+GM+ L+ Y   NAG CK+L HP WGSAVYPATIF  AP  VA  L+
Sbjct:   31 DDLECSLHYLPKPLLREFSHVFNNEHVRFGSNDGNLQLLAIPTNQRAREDLVAVGDHIEAEKDRLLNVFLTFGKCICEQLRSQGYWADYIDPCSGLPMISLNCNKVYSEVDGMECLLNYKAYNAGFCKILTHPKWGSAVYPATIFAYAPVEVAKSLM 187          
BLAST of mRNA_P-wetherbeei_contig125.2.1 vs. uniprot
Match: A0A7S1U3I4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3I4_9STRA)

HSP 1 Score: 183 bits (464), Expect = 4.000e-56
Identity = 91/158 (57.59%), Postives = 116/158 (73.42%), Query Frame = 1
Query:   37 LLQPCLTPDGLEVSLHTCPRALLRELRYVFSVREDLAQCLAIPTNQHAVMDLVNVGDNVESEKDKLLNVFMKFARPLCDAIRAEGYWADYIDPCSGLPMLTTEGNKVYSEVEGMQALMQYPVINAGGCKVLLHPAWGSAVYPATIFTTAPRGVALRLL 510
            L+ P +    L++S H C R+++REL+ VF    D+A  +AIPT QHAV DLV VG++VE+EKD+LLNVF+ FA+ + +A  A G+WADYIDPCSGLPM  + GN VYSEVEG   L+ Y  +NAG CKVLLHPAWGS +YPAT+FTTAP  V   +L
Sbjct:    6 LVTPVVIRGNLQISAHECQRSMIRELKSVFPT-VDMAGAVAIPTVQHAVTDLVAVGEDVENEKDRLLNVFVDFAKDVVEAFAAGGFWADYIDPCSGLPM-GSPGNTVYSEVEGHTRLLHYRAVNAGPCKVLLHPAWGSEIYPATMFTTAPPEVVAEVL 161          
BLAST of mRNA_P-wetherbeei_contig125.2.1 vs. uniprot
Match: A0A7S2KJV0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJV0_9STRA)

HSP 1 Score: 183 bits (465), Expect = 5.310e-56
Identity = 88/157 (56.05%), Postives = 110/157 (70.06%), Query Frame = 1
Query:   61 DGLEVSLHTCPRALLRELRYVF------------SVREDLAQCLAIPTNQHAVMDLVNVGDNVESEKDKLLNVFMKFARPLCDAIRAEGYWADYIDPCSGLPMLTTEGNKVYSEVEGMQALMQYPVINAGGCKVLLHPAWGSAVYPATIFTTAPRGV 495
            D +E S+HT P+ L RE  +VF            + R+D+ +  A+PTNQ A  DLVN+GD++E EKD+LLNVFM F R  C+ +RA+GYWADYIDPCSGLPMLT   NKVYSEV+GM+ L+ Y   NAG CK+L HP WGSAVYPA++F  AP  V
Sbjct:   23 DDIECSIHTIPKPLAREFAHVFGENYLQGFEAANAARDDV-KVFAVPTNQRAREDLVNIGDHIEMEKDRLLNVFMDFGRTFCERVRAKGYWADYIDPCSGLPMLTKHCNKVYSEVDGMEVLLNYRSYNAGFCKILTHPKWGSAVYPASVFVHAPFSV 178          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig125.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3L9_9PHAE7.910e-7069.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2FSY7_9STRA8.600e-6561.39Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2CG30_9STRA3.090e-6357.83Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3XWY3_HETAK8.490e-6255.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z3S3_9STRA3.990e-6165.10Methylmalonic aciduria and homocystinuria type D p... [more]
A0A7S2Y0K1_9STRA1.660e-5962.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3PZ89_9STRA6.830e-5857.23Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2LGH2_9STRA3.860e-5658.60Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1U3I4_9STRA4.000e-5657.59Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2KJV0_9STRA5.310e-5656.05Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig125contigP-wetherbeei_contig125:3397..4370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog157072.XP_008869042.1
PFAMsMMADHC
Model size510
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.22e-55
EggNOG OGsKOG3994@1|root,KOG3994@2759|Eukaryota
Ec32 ortholog descriptionMethylmalonic aciduria and homocystinuria type D protein
Ec32 orthologEc-01_009710.1
Descriptioncobalamin metabolic process
Cds size510
COG categoryCH
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185950.6135557-CDS-P-wetherbeei_contig125:3396..36391683185950.6135557-CDS-P-wetherbeei_contig125:3396..3639Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig125 3397..3639 +
1683185950.627939-CDS-P-wetherbeei_contig125:3805..38921683185950.627939-CDS-P-wetherbeei_contig125:3805..3892Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig125 3806..3892 +
1683185950.6365952-CDS-P-wetherbeei_contig125:4190..43701683185950.6365952-CDS-P-wetherbeei_contig125:4190..4370Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig125 4191..4370 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig125.2.1prot_P-wetherbeei_contig125.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig125 3397..4370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig125.2.1

>prot_P-wetherbeei_contig125.2.1 ID=prot_P-wetherbeei_contig125.2.1|Name=mRNA_P-wetherbeei_contig125.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
MPPQQRVPRCETLLQPCLTPDGLEVSLHTCPRALLRELRYVFSVREDLAQ
CLAIPTNQHAVMDLVNVGDNVESEKDKLLNVFMKFARPLCDAIRAEGYWA
DYIDPCSGLPMLTTEGNKVYSEVEGMQALMQYPVINAGGCKVLLHPAWGS
AVYPATIFTTAPRGVALRLL
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mRNA from alignment at P-wetherbeei_contig125:3397..4370+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig125.2.1 ID=mRNA_P-wetherbeei_contig125.2.1|Name=mRNA_P-wetherbeei_contig125.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=974bp|location=Sequence derived from alignment at P-wetherbeei_contig125:3397..4370+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTCCCCAGCAGCGAGTTCCGCGGTGTGAGACTCTCCTTCAACCGTG CTTGACGCCCGATGGGCTCGAGGTGTCCCTCCACACGTGTCCGAGGGCTC TGCTCCGAGAGCTTCGCTACGTGTTTTCCGTGCGGGAAGACTTGGCGCAA TGCCTTGCAATACCAACGAATCAGCACGCTGTGATGGACCTTGTTAATGT CGGCGATAACGTAGAGTCCGAAAAGGACAAGCTTTTGAATGTGGTAAGTC GCCCACAATGCCGAGAAAGCGGCGGTTTGTCTTTGGAAGGATACGACGCT TGATATCCAGCTTTCTCTTCATTGAAAAGAGGCAATGCGGATTAATGCTG ACGGCGTTGTCCTGAACTCCAACCTCGAAAATGTAACGCCTACCATACGT CTGTCGTAGTTTATGAAGTTTGCTAGGCCGTTGTGCGACGCCATTCGTGC TGAAGGGTACTGGGCAGATTACATCGACCCCTGTTCAGGACTACCGGTAA GAGAGCGCGCCGTCGGCGAGCTGCGGGAAGTCTTTTAAGCAGTTACTACC AAATCGCTGGTGCTGGATTGGATGTTTTCAAACTTACGAACCTCGCAAGT CCTGTTGCTCGTTGAATGCACAATTGTCTTCGGACGCTGTGCTGGTTACA ACTTTTCTTTTGAGGTTTTTTTGGTTGCATCACGAGGCTTCGTTTTGGTG TCTTTCAACAACTTTTTTAACATCATTGTGATACAAAGCTCTTGATGCCG CCGCCATCCCCGGCTGCCGCGACCGCTTCGCTCCCTGTCACCAGATGCTG ACAACGGAGGGCAACAAGGTGTACAGCGAGGTTGAGGGCATGCAGGCCCT CATGCAGTACCCCGTCATCAACGCCGGCGGCTGCAAGGTTCTGCTGCATC CGGCGTGGGGGTCCGCCGTCTACCCGGCCACCATCTTCACCACAGCGCCG AGGGGCGTGGCGCTGCGGCTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig125:3397..4370+

>mRNA_P-wetherbeei_contig125.2.1 ID=mRNA_P-wetherbeei_contig125.2.1|Name=mRNA_P-wetherbeei_contig125.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig125:3397..4370+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTCCCCAGCAGCGAGTTCCGCGGTGTGAGACTCTCCTTCAACCGTG
CTTGACGCCCGATGGGCTCGAGGTGTCCCTCCACACGTGTCCGAGGGCTC
TGCTCCGAGAGCTTCGCTACGTGTTTTCCGTGCGGGAAGACTTGGCGCAA
TGCCTTGCAATACCAACGAATCAGCACGCTGTGATGGACCTTGTTAATGT
CGGCGATAACGTAGAGTCCGAAAAGGACAAGCTTTTGAATGTGTTTATGA
AGTTTGCTAGGCCGTTGTGCGACGCCATTCGTGCTGAAGGGTACTGGGCA
GATTACATCGACCCCTGTTCAGGACTACCGATGCTGACAACGGAGGGCAA
CAAGGTGTACAGCGAGGTTGAGGGCATGCAGGCCCTCATGCAGTACCCCG
TCATCAACGCCGGCGGCTGCAAGGTTCTGCTGCATCCGGCGTGGGGGTCC
GCCGTCTACCCGGCCACCATCTTCACCACAGCGCCGAGGGGCGTGGCGCT
GCGGCTGCTG
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