mRNA_P-wetherbeei_contig55775.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55775.1.1
Unique NamemRNA_P-wetherbeei_contig55775.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55775.1.1 vs. uniprot
Match: A0A3N5N4T8_9HYPH (NADP-dependent malic enzyme (Fragment) n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A3N5N4T8_9HYPH)

HSP 1 Score: 270 bits (690), Expect = 7.640e-89
Identity = 134/173 (77.46%), Postives = 150/173 (86.71%), Query Frame = 1
Query:    1 DRNVFASCMVAMGEADGVVTGVTRNWYTAYEDVRRVLDAKPGQRPIGVSLMLSQGRAVLIADSSVHDMPTSEELADIAASAAKVARRLGMEPRVALLAYSTFGHPRGERSDVARRAVELLDARGVDFEYDGEMAADVALNREAMHRYPFCRLQDTANVLVMPAFHSASISSKM 519
            DRNVFA+CMVAMG ADG+VTGVTRNWYTAYEDVR+VLDA+P +R IGVS+ L +GR VL+AD SVHDMP   +LADI   A +VARRL +EPRVALLAYSTFGHPRGERSD  R AV +LD R VDFEYDG+MAADVALNREA+ +YPFCRL DTANVLVMPAFHSASIS+KM
Sbjct:   66 DRNVFAACMVAMGHADGMVTGVTRNWYTAYEDVRKVLDARPRRRVIGVSVALIRGRVVLVADVSVHDMPDGNQLADITEEAVRVARRLAIEPRVALLAYSTFGHPRGERSDRVREAVGILDKRQVDFEYDGDMAADVALNREALKQYPFCRLSDTANVLVMPAFHSASISTKM 238          
BLAST of mRNA_P-wetherbeei_contig55775.1.1 vs. uniprot
Match: A0A7C4TQF8_9HYPH (NADP-dependent malic enzyme n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TQF8_9HYPH)

HSP 1 Score: 282 bits (721), Expect = 4.470e-88
Identity = 139/173 (80.35%), Postives = 158/173 (91.33%), Query Frame = 1
Query:    1 DRNVFASCMVAMGEADGVVTGVTRNWYTAYEDVRRVLDAKPGQRPIGVSLMLSQGRAVLIADSSVHDMPTSEELADIAASAAKVARRLGMEPRVALLAYSTFGHPRGERSDVARRAVELLDARGVDFEYDGEMAADVALNREAMHRYPFCRLQDTANVLVMPAFHSASISSKM 519
            DRNVFA+CMVAMG ADG+VTG TRNWYTAY+D+R VLDA+  +R IGVSL LS+GRAVL+AD++VH+MP++EELADIA  AAKVARRLGMEPRVALLAYSTFG PRGERSD  RRAVE+LD RGVDFEYDG+MAADVAL+REAM RYPFCRL DTANVL+MPAFH+ASIS+KM
Sbjct:  538 DRNVFAACMVAMGHADGLVTGTTRNWYTAYQDIRHVLDARADRRVIGVSLALSRGRAVLVADAAVHNMPSAEELADIAEEAAKVARRLGMEPRVALLAYSTFGAPRGERSDDVRRAVEVLDRRGVDFEYDGDMAADVALDREAMQRYPFCRLSDTANVLIMPAFHAASISTKM 710          
BLAST of mRNA_P-wetherbeei_contig55775.1.1 vs. uniprot
Match: A0A7C2RBJ8_9HYPH (NADP-dependent malic enzyme n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A7C2RBJ8_9HYPH)

HSP 1 Score: 280 bits (717), Expect = 1.740e-87
Identity = 139/173 (80.35%), Postives = 154/173 (89.02%), Query Frame = 1
Query:    1 DRNVFASCMVAMGEADGVVTGVTRNWYTAYEDVRRVLDAKPGQRPIGVSLMLSQGRAVLIADSSVHDMPTSEELADIAASAAKVARRLGMEPRVALLAYSTFGHPRGERSDVARRAVELLDARGVDFEYDGEMAADVALNREAMHRYPFCRLQDTANVLVMPAFHSASISSKM 519
            DRNVFA+CMVAMG ADG+VTGVTRNWYTAYEDVR+VLD +P +R IGVS+ LS+GRAVL+AD +VHDMPT+E+LADIA  AA VARRL MEPRVA LAYSTFGHPRGERSD  R AV +LD R VDFEYDG+MAADVALNREAM +YPFCRL DTANVLVMPAFHSASIS+KM
Sbjct:  538 DRNVFAACMVAMGHADGMVTGVTRNWYTAYEDVRKVLDPRPRRRVIGVSIALSRGRAVLVADVAVHDMPTAEQLADIAQEAASVARRLAMEPRVAFLAYSTFGHPRGERSDRVREAVSILDQRQVDFEYDGDMAADVALNREAMRQYPFCRLSDTANVLVMPAFHSASISTKM 710          
BLAST of mRNA_P-wetherbeei_contig55775.1.1 vs. uniprot
Match: A0A3S0FU59_9HYPH (NADP-dependent malic enzyme n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A3S0FU59_9HYPH)

HSP 1 Score: 272 bits (696), Expect = 2.660e-84
Identity = 133/173 (76.88%), Postives = 153/173 (88.44%), Query Frame = 1
Query:    1 DRNVFASCMVAMGEADGVVTGVTRNWYTAYEDVRRVLDAKPGQRPIGVSLMLSQGRAVLIADSSVHDMPTSEELADIAASAAKVARRLGMEPRVALLAYSTFGHPRGERSDVARRAVELLDARGVDFEYDGEMAADVALNREAMHRYPFCRLQDTANVLVMPAFHSASISSKM 519
            DRNVFA+CMVAMG+ADG+VTGVTRNW TAY+DVR+VLDAK  +R IGVS++L +GRAVL+AD SVHDMPT EE+ADIA  A +VARRL MEPRVALLAYS FGHPRGER++  R AV +LD RGVDFE+DG+MAADVALNRE M +YPFCRL DTANVL+MPAFHSASIS+KM
Sbjct:  549 DRNVFAACMVAMGQADGLVTGVTRNWTTAYDDVRKVLDAKAARRVIGVSIVLIRGRAVLVADVSVHDMPTGEEIADIAEEAVRVARRLSMEPRVALLAYSNFGHPRGERTEKVREAVAILDGRGVDFEFDGDMAADVALNRENMRQYPFCRLSDTANVLIMPAFHSASISTKM 721          
BLAST of mRNA_P-wetherbeei_contig55775.1.1 vs. uniprot
Match: UPI001988E0C0 (NADP-dependent malic enzyme n=1 Tax=Chitinophagales bacterium TaxID=2448779 RepID=UPI001988E0C0)

HSP 1 Score: 264 bits (674), Expect = 1.170e-83
Identity = 127/173 (73.41%), Postives = 150/173 (86.71%), Query Frame = 1
Query:    1 DRNVFASCMVAMGEADGVVTGVTRNWYTAYEDVRRVLDAKPGQRPIGVSLMLSQGRAVLIADSSVHDMPTSEELADIAASAAKVARRLGMEPRVALLAYSTFGHPRGERSDVARRAVELLDARGVDFEYDGEMAADVALNREAMHRYPFCRLQDTANVLVMPAFHSASISSKM 519
            DRN+F +CMVA+G AD +VTGVTRNW T Y D+R+VLD KPG+R IGVSL+LS+GRAVL+AD+SVHDMP +EELADIA  AA+VA +LG+ PRVA+LAYSTFGHP+GERSD  R AV +LD+R VDFEYDGEM  DVALN++AM  YPFCRL DTANVL+MPAFHSASIS+KM
Sbjct:  283 DRNIFGACMVALGHADAMVTGVTRNWSTIYADIRQVLDPKPGRRVIGVSLILSKGRAVLVADTSVHDMPNAEELADIAVEAAEVAEKLGLTPRVAMLAYSTFGHPKGERSDQVREAVAILDSRRVDFEYDGEMGGDVALNKKAMALYPFCRLSDTANVLIMPAFHSASISTKM 455          
BLAST of mRNA_P-wetherbeei_contig55775.1.1 vs. uniprot
Match: A0A833D5K0_9HYPH (NADP-dependent malic enzyme n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A833D5K0_9HYPH)

HSP 1 Score: 257 bits (657), Expect = 4.450e-82
Identity = 127/173 (73.41%), Postives = 149/173 (86.13%), Query Frame = 1
Query:    1 DRNVFASCMVAMGEADGVVTGVTRNWYTAYEDVRRVLDAKPGQRPIGVSLMLSQGRAVLIADSSVHDMPTSEELADIAASAAKVARRLGMEPRVALLAYSTFGHPRGERSDVARRAVELLDARGVDFEYDGEMAADVALNREAMHRYPFCRLQDTANVLVMPAFHSASISSKM 519
            DRNVFA+CMVA+G AD +VTGVTRN+ TA+++VR  LD KPG   IG+SL++S+GR VL+AD+SVHDMPT+++LADIA  AA VARRLG EPRVA+LAYSTFG PRGERSD  R AV +LD RGVDFEYDGEM ADVAL+ EAM  YPFCRL+DTANVL+MPAFHSASIS+KM
Sbjct:  199 DRNVFAACMVALGHADAMVTGVTRNFSTAFDNVRLALDPKPGHTVIGLSLIISRGRTVLVADTSVHDMPTADQLADIAVEAAHVARRLGTEPRVAMLAYSTFGQPRGERSDRVREAVAILDKRGVDFEYDGEMGADVALSAEAMRPYPFCRLKDTANVLIMPAFHSASISTKM 371          
BLAST of mRNA_P-wetherbeei_contig55775.1.1 vs. uniprot
Match: UPI00201DE159 (phosphate acyltransferase n=1 Tax=Pseudomonas sp. R2.Fl TaxID=2928707 RepID=UPI00201DE159)

HSP 1 Score: 251 bits (641), Expect = 1.680e-80
Identity = 126/173 (72.83%), Postives = 146/173 (84.39%), Query Frame = 1
Query:    1 DRNVFASCMVAMGEADGVVTGVTRNWYTAYEDVRRVLDAKPGQRPIGVSLMLSQGRAVLIADSSVHDMPTSEELADIAASAAKVARRLGMEPRVALLAYSTFGHPRGERSDVARRAVELLDARGVDFEYDGEMAADVALNREAMHRYPFCRLQDTANVLVMPAFHSASISSKM 519
            DRN FASCMVA+G+AD +VTG TRN+ TA EDVRR +DA+PG R IGVSL L++GR VLIAD+++HDMPT+EELADIA  +A VARR+G EPRVALLAYSTFGHP GERS+  R AV++LDAR VDFEYDGEM ADVALN   M +YPFCRL  TANVLVMPA HSA+IS+KM
Sbjct:  134 DRNHFASCMVALGDADAMVTGTTRNYSTALEDVRRCIDAEPGHRIIGVSLALTRGRTVLIADTALHDMPTAEELADIAEESAGVARRMGYEPRVALLAYSTFGHPTGERSERVREAVKILDARQVDFEYDGEMGADVALNAHRMEQYPFCRLSGTANVLVMPAIHSAAISTKM 306          
BLAST of mRNA_P-wetherbeei_contig55775.1.1 vs. uniprot
Match: A0A2H6IZZ8_9BACT (NADP-dependent malic enzyme n=3 Tax=Bacteria TaxID=2 RepID=A0A2H6IZZ8_9BACT)

HSP 1 Score: 261 bits (668), Expect = 2.800e-80
Identity = 128/173 (73.99%), Postives = 150/173 (86.71%), Query Frame = 1
Query:    1 DRNVFASCMVAMGEADGVVTGVTRNWYTAYEDVRRVLDAKPGQRPIGVSLMLSQGRAVLIADSSVHDMPTSEELADIAASAAKVARRLGMEPRVALLAYSTFGHPRGERSDVARRAVELLDARGVDFEYDGEMAADVALNREAMHRYPFCRLQDTANVLVMPAFHSASISSKM 519
            DRN+FA+CMVAMG AD +VTGVTRNW  AY+DV RVLD +PG R IGVS+ + +GR VL+AD++VHDMP ++ELADIA  AA VAR+LG EPRVALLAYSTFGHP+GERS+ ARRAVE+LD +GVDFEYDGEMAADVALN EAM  YPFCRL + ANVL+MPAFHSASI++KM
Sbjct:  538 DRNIFAACMVAMGHADAMVTGVTRNWSIAYQDVCRVLDPQPGHRVIGVSVAVCRGRTVLVADTAVHDMPEADELADIAIEAAGVARKLGYEPRVALLAYSTFGHPKGERSENARRAVEILDTQGVDFEYDGEMAADVALNAEAMKAYPFCRLSEPANVLIMPAFHSASIATKM 710          
BLAST of mRNA_P-wetherbeei_contig55775.1.1 vs. uniprot
Match: UPI001FDAB362 (phosphate acyltransferase n=1 Tax=Mesorhizobium TaxID=68287 RepID=UPI001FDAB362)

HSP 1 Score: 246 bits (628), Expect = 6.820e-80
Identity = 119/173 (68.79%), Postives = 148/173 (85.55%), Query Frame = 1
Query:    1 DRNVFASCMVAMGEADGVVTGVTRNWYTAYEDVRRVLDAKPGQRPIGVSLMLSQGRAVLIADSSVHDMPTSEELADIAASAAKVARRLGMEPRVALLAYSTFGHPRGERSDVARRAVELLDARGVDFEYDGEMAADVALNREAMHRYPFCRLQDTANVLVMPAFHSASISSKM 519
            DRN FA+CMVA+G+ADG+VTGVTRN+ TA +D+RRV+DAKPG R IGVS++L++G+ VL+AD++VHDMP +E++ADIA  AA  ARR+G EPR+A+LAYSTFGHP+GERS+  + AV +LD R VDFEYDGEMAADVALN  AM +YPF RL   ANVL+MPAFHSASIS+KM
Sbjct:   33 DRNHFAACMVALGDADGIVTGVTRNYSTALDDIRRVIDAKPGHRVIGVSIVLARGKTVLVADTAVHDMPNAEQIADIAEEAAGFARRMGYEPRLAMLAYSTFGHPQGERSERVQEAVRILDKRRVDFEYDGEMAADVALNARAMAQYPFIRLTGPANVLIMPAFHSASISTKM 205          
BLAST of mRNA_P-wetherbeei_contig55775.1.1 vs. uniprot
Match: A0A529XAF8_9HYPH (NADP-dependent malic enzyme (Fragment) n=4 Tax=unclassified Mesorhizobium TaxID=325217 RepID=A0A529XAF8_9HYPH)

HSP 1 Score: 248 bits (632), Expect = 2.940e-79
Identity = 120/173 (69.36%), Postives = 148/173 (85.55%), Query Frame = 1
Query:    1 DRNVFASCMVAMGEADGVVTGVTRNWYTAYEDVRRVLDAKPGQRPIGVSLMLSQGRAVLIADSSVHDMPTSEELADIAASAAKVARRLGMEPRVALLAYSTFGHPRGERSDVARRAVELLDARGVDFEYDGEMAADVALNREAMHRYPFCRLQDTANVLVMPAFHSASISSKM 519
            DRN FA+CMVA+G+ADG+VTGVTRN+ TA +DVRR++DAKPG R IGVS++L++GR VL+AD++VHDMP +E++ADIA  AA  ARR+G EPR+A+LAYSTFGHP+GERS+  + AV +LD R VDFEYDGEMAADVALN  AM +YPF RL   ANVL+MPAFHSASIS+KM
Sbjct:  124 DRNHFAACMVALGDADGIVTGVTRNYSTALDDVRRIIDAKPGHRVIGVSIVLARGRTVLVADTAVHDMPNAEQIADIAEEAAGFARRMGYEPRIAMLAYSTFGHPQGERSERVQEAVRILDKRRVDFEYDGEMAADVALNPRAMAQYPFIRLTGPANVLIMPAFHSASISTKM 296          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55775.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3N5N4T8_9HYPH7.640e-8977.46NADP-dependent malic enzyme (Fragment) n=1 Tax=Hyp... [more]
A0A7C4TQF8_9HYPH4.470e-8880.35NADP-dependent malic enzyme n=1 Tax=Hyphomicrobial... [more]
A0A7C2RBJ8_9HYPH1.740e-8780.35NADP-dependent malic enzyme n=2 Tax=Hyphomicrobial... [more]
A0A3S0FU59_9HYPH2.660e-8476.88NADP-dependent malic enzyme n=1 Tax=Hyphomicrobial... [more]
UPI001988E0C01.170e-8373.41NADP-dependent malic enzyme n=1 Tax=Chitinophagale... [more]
A0A833D5K0_9HYPH4.450e-8273.41NADP-dependent malic enzyme n=1 Tax=Hyphomicrobiac... [more]
UPI00201DE1591.680e-8072.83phosphate acyltransferase n=1 Tax=Pseudomonas sp. ... [more]
A0A2H6IZZ8_9BACT2.800e-8073.99NADP-dependent malic enzyme n=3 Tax=Bacteria TaxID... [more]
UPI001FDAB3626.820e-8068.79phosphate acyltransferase n=1 Tax=Mesorhizobium Ta... [more]
A0A529XAF8_9HYPH2.940e-7969.36NADP-dependent malic enzyme (Fragment) n=4 Tax=unc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55775contigP-wetherbeei_contig55775:3..521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1041146.ATZB01000012_gene3242
Preferred nametme
PFAMsMalic_M,PTA_PTB,malic
Model size519
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00105
KEGG koko:K00029
KEGG ReactionR00216
KEGG Pathwayko00620,ko00710,ko01100,ko01120,ko01200,map00620,map00710,map01100,map01120,map01200
KEGG ModuleM00169,M00172
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.79e-73
EggNOG OGsCOG0280@1|root,COG0281@1|root,COG0280@2|Bacteria,COG0281@2|Bacteria,1MU0A@1224|Proteobacteria,2TQJT@28211|Alphaproteobacteria,4B8Q2@82115|Rhizobiaceae
EC1.1.1.40
Descriptionmalic enzyme
Cds size495
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186830.0428693-CDS-P-wetherbeei_contig55775:2..4971683186830.0428693-CDS-P-wetherbeei_contig55775:2..497Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55775 3..497 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186830.0634453-UTR-P-wetherbeei_contig55775:497..5211683186830.0634453-UTR-P-wetherbeei_contig55775:497..521Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig55775 498..521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55775.1.1prot_P-wetherbeei_contig55775.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55775 3..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55775.1.1

>prot_P-wetherbeei_contig55775.1.1 ID=prot_P-wetherbeei_contig55775.1.1|Name=mRNA_P-wetherbeei_contig55775.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
MVAMGEADGVVTGVTRNWYTAYEDVRRVLDAKPGQRPIGVSLMLSQGRAV
LIADSSVHDMPTSEELADIAASAAKVARRLGMEPRVALLAYSTFGHPRGE
RSDVARRAVELLDARGVDFEYDGEMAADVALNREAMHRYPFCRLQDTANV
LVMPAFHSASISSKM
back to top

mRNA from alignment at P-wetherbeei_contig55775:3..521-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55775.1.1 ID=mRNA_P-wetherbeei_contig55775.1.1|Name=mRNA_P-wetherbeei_contig55775.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig55775:3..521- (Phaeothamnion wetherbeei SAG_119_79)
GACCGAAACGTATTCGCTTCCTGCATGGTCGCAATGGGGGAAGCGGACGG CGTCGTCACGGGCGTAACGCGGAACTGGTACACGGCCTACGAGGACGTGC GCCGCGTGCTCGACGCCAAGCCGGGGCAGCGCCCGATCGGCGTGTCGCTG ATGCTGTCGCAAGGGCGCGCCGTTCTGATCGCGGATTCCAGCGTCCACGA CATGCCGACCTCGGAGGAACTGGCCGACATCGCGGCAAGCGCGGCGAAGG TTGCCCGGCGCCTCGGGATGGAACCGCGCGTGGCCCTGCTCGCCTATTCC ACGTTCGGTCACCCGCGCGGCGAGCGGTCCGATGTTGCCCGGCGCGCAGT CGAACTGCTCGACGCCCGCGGTGTCGATTTCGAGTATGACGGCGAGATGG CCGCCGATGTCGCGCTCAACCGTGAAGCCATGCACCGCTATCCATTCTGC CGTCTCCAGGACACTGCCAACGTCCTTGTCATGCCGGCTTTCCATTCCGC CTCGATATCCTCGAAGATG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig55775:3..521-

>mRNA_P-wetherbeei_contig55775.1.1 ID=mRNA_P-wetherbeei_contig55775.1.1|Name=mRNA_P-wetherbeei_contig55775.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig55775:3..521- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCGCAATGGGGGAAGCGGACGGCGTCGTCACGGGCGTAACGCGGAA
CTGGTACACGGCCTACGAGGACGTGCGCCGCGTGCTCGACGCCAAGCCGG
GGCAGCGCCCGATCGGCGTGTCGCTGATGCTGTCGCAAGGGCGCGCCGTT
CTGATCGCGGATTCCAGCGTCCACGACATGCCGACCTCGGAGGAACTGGC
CGACATCGCGGCAAGCGCGGCGAAGGTTGCCCGGCGCCTCGGGATGGAAC
CGCGCGTGGCCCTGCTCGCCTATTCCACGTTCGGTCACCCGCGCGGCGAG
CGGTCCGATGTTGCCCGGCGCGCAGTCGAACTGCTCGACGCCCGCGGTGT
CGATTTCGAGTATGACGGCGAGATGGCCGCCGATGTCGCGCTCAACCGTG
AAGCCATGCACCGCTATCCATTCTGCCGTCTCCAGGACACTGCCAACGTC
CTTGTCATGCCGGCTTTCCATTCCGCCTCGATATCCTCGAAGATG
back to top