mRNA_P-wetherbeei_contig55765.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55765.1.1
Unique NamemRNA_P-wetherbeei_contig55765.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55765.1.1 vs. uniprot
Match: A0A7W0KC08_9CHLR (Site-2 protease family protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0KC08_9CHLR)

HSP 1 Score: 159 bits (403), Expect = 1.330e-43
Identity = 87/158 (55.06%), Postives = 110/158 (69.62%), Query Frame = 1
Query:    4 IYIGQVAEGSPAFEAGWQPGDAIVAVDGTPVTSSGQLRDLISQHAGSQTEVTILRGDRELTTTVTPRQNPPANQGATGITMGVGINSTVTIRAVEAGSPAATAGLQTGDRVVAIDGIRLESWFQAQNMLASVAGTTVPVTVQRDGREQTVSLAVPELT 477
            IYI  V EGSPA  AGWQPGD I AVDG  VT+SGQL+D I   AG +  VTI RGD  + T+V PR++PPA QGATGI M  G  S + I  V+ GS AA AG Q+GD +VAIDGI+LE+  QA+N+ A+  G  +PVTV+RDG+    ++ +P+LT
Sbjct:  129 IYIATVVEGSPAAGAGWQPGDTIHAVDGEVVTTSGQLQDAIGDRAGERVGVTIRRGDELIETSVVPREDPPARQGATGIEMVQGSPSILRITDVDPGSAAAAAGWQSGDEIVAIDGIQLEAEAQARNLFAANIGEEIPVTVERDGQTVETTVTMPQLT 286          
BLAST of mRNA_P-wetherbeei_contig55765.1.1 vs. uniprot
Match: A0A7V9VHN0_9CHLR (Site-2 protease family protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VHN0_9CHLR)

HSP 1 Score: 137 bits (346), Expect = 2.950e-35
Identity = 72/159 (45.28%), Postives = 104/159 (65.41%), Query Frame = 1
Query:    1 QIYIGQVAEGSPAFEAGWQPGDAIVAVDGTPVTSSGQLRDLISQHAGSQTEVTILRGDRELTTTVTPRQNPPANQGATGITMGVGINSTVTIRAVEAGSPAATAGLQTGDRVVAIDGIRLESWFQAQNMLASVAGTTVPVTVQRDGREQTVSLAVPELT 477
            +IYI QV   SPA EAGWQPGDAI AVDG  +     L   +   AGS+T +T+LRG  ++ T++TPR+NPP  QGATG+ +     S +++ +VE  SPAA AG  +GD ++A++G ++ES  QA +ML + AG  V VTV+R+G +   +L + + T
Sbjct:  129 RIYINQVEPDSPAAEAGWQPGDAIFAVDGEDIDGRANLTAALDASAGSETPITVLRGGEQVETSITPRENPPVGQGATGVLIIEAYLSDISVGSVEPASPAADAGWLSGDDIIAVNGEQIESVAQASSMLDAAAGGAVDVTVERNGEQVATTLELRDAT 287          
BLAST of mRNA_P-wetherbeei_contig55765.1.1 vs. uniprot
Match: A0A7V9B7G1_9CHLR (PDZ domain-containing protein (Fragment) n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9B7G1_9CHLR)

HSP 1 Score: 132 bits (332), Expect = 1.510e-34
Identity = 72/153 (47.06%), Postives = 99/153 (64.71%), Query Frame = 1
Query:    1 QIYIGQVAEGSPAFEAGWQPGDAIVAVDGTPVTSSGQLRDLISQHAGSQTEVTILRGDRELTTTVTPRQNPPANQGATGITMGVGINSTVTIRAVEAGSPAATAGLQTGDRVVAIDGIRLESWFQAQNMLASVAGTTVPVTVQRDGREQTVSL 459
            +IYI QV   SPA EAGWQPGDAI AVDG  +     L   +   AG++T++ +LRG  ++ T++TPR NPPA QGATG+ +     S ++I +VE GS A  AG  +GD +VA++G  +ES  QA +ML + AG  V VTV+RDG +   +L
Sbjct:  129 RIYINQVEPDSPAAEAGWQPGDAIFAVDGENIDGRADLTAALDASAGTETQMVVLRGGEQVETSITPRANPPAGQGATGVLIVEAYLSDISIGSVEPGSAADAAGWLSGDDIVAVNGEPIESVAQASSMLDAAAGGPVAVTVERDGEQVVTTL 281          
BLAST of mRNA_P-wetherbeei_contig55765.1.1 vs. uniprot
Match: A0A7V9VV00_9CHLR (RIP metalloprotease RseP n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VV00_9CHLR)

HSP 1 Score: 134 bits (337), Expect = 5.600e-34
Identity = 73/156 (46.79%), Postives = 99/156 (63.46%), Query Frame = 1
Query:    4 IYIGQVAEGSPAFEAGWQPGDAIVAVDGTPVTSSGQLRDLISQHAGSQTEVTILRGDRELTTTVTPRQNPPANQGATGITMGVGINSTVTIRAVEAGSPAATAGLQTGDRVVAIDGIRLESWFQAQNMLASVAGTTVPVTVQRDGREQTVSLAVPE 471
            +YI  V E SPA  A W PGDAI AVDG  +  S QL+  I  HAG +  VTI RGD  + T++ PR +PP  QGATGI+M  G  S + I  V  G+ AA AG Q+GD ++A++GI LE+  QA+++    AG  V VT++RDG+    S+A+P+
Sbjct:  130 VYIANVEESSPAEGANWLPGDAIHAVDGEVIADSEQLQSAIGSHAGQEVSVTIRRGDELIETSLIPRLDPPPRQGATGISMVQGTRSILKITEVAPGTAAADAGWQSGDEIIAVNGIELEAEAQARSLFLEGAGDAVAVTLERDGQTLETSVAMPQ 285          
BLAST of mRNA_P-wetherbeei_contig55765.1.1 vs. uniprot
Match: A0A7V8WU51_9CHLR (Site-2 protease family protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V8WU51_9CHLR)

HSP 1 Score: 122 bits (306), Expect = 1.310e-29
Identity = 67/157 (42.68%), Postives = 97/157 (61.78%), Query Frame = 1
Query:    4 IYIGQVAEGSPAFEAGWQPGDAIVAVDGTPVTSSGQLRDLISQHAGSQTEVTILRGDRELTTTVTPRQNPPANQGATGITMGVGINSTVTIRAVEAGSPAATAGLQTGDRVVAIDGIRLESWFQAQNMLASVAGTTVPVTVQRDGREQTVSLAVPEL 474
            +YI QV  GSPA  AGW  GD +VA++G  V ++  L   IS+  G +  V I RGD+ + T++TPR +PPANQG TGI++  G  S + I  V+ GS AATAG + GD ++AI+G  +++  Q  + L + AG TVPVT+ R       ++ VP +
Sbjct:  130 VYIAQVEAGSPASSAGWLAGDELVAIEGKAVDNAAALSSRISESVGKRIAVDIQRGDQTIATSITPRADPPANQGPTGISIAEGGPSIIRITEVDPGSTAATAGWRPGDEILAINGQSVQAGVQTSSALRAGAGGTVPVTLSRGEEAVETTVDVPPM 286          
BLAST of mRNA_P-wetherbeei_contig55765.1.1 vs. uniprot
Match: A0A350T3U7_9CHLR (Zinc metalloprotease (Fragment) n=3 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A350T3U7_9CHLR)

HSP 1 Score: 117 bits (292), Expect = 1.070e-28
Identity = 62/155 (40.00%), Postives = 93/155 (60.00%), Query Frame = 1
Query:    4 IYIGQVAEGSPAFEAGWQPGDAIVAVDGTPVTSSGQLRDLISQHAGSQTEVTILRGDRELTTTVTPRQNPPANQGATGITMGVGINSTVTIRAVEAGSPAATAGLQTGDRVVAIDGIRLESWFQAQNMLASVAGTTVPVTVQRDGREQTVSLAVP 468
            +Y+  V  GSPA +AGWQ GD  + ++G  +TSS ++  L +++AG  T VT+ R    +TTT+TPR+NPPA QG TGIT+    N+T+ +  V + S AA AG   GD + ++DG  +  +      L + AG    + VQRDG   T++ A+P
Sbjct:  123 VYVVNVNPGSPAADAGWQSGDRFLQINGATITSSDEVSRLTTRNAGRATTVTLDRAGEVITTTITPRENPPAGQGRTGITLSSAPNATIHVNTVPSDSLAAQAGFHAGDIIQSVDGQPVPDYLAYALALRNRAGGDAQIQVQRDGAPVTLTAAIP 277          
BLAST of mRNA_P-wetherbeei_contig55765.1.1 vs. uniprot
Match: A0A7V9VD23_9CHLR (Site-2 protease family protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9VD23_9CHLR)

HSP 1 Score: 115 bits (287), Expect = 5.550e-27
Identity = 62/156 (39.74%), Postives = 91/156 (58.33%), Query Frame = 1
Query:    1 QIYIGQVAEGSPAFEAGWQPGDAIVAVDGTPVTSSGQLRDLISQHAGSQTEVTILRGDRELTTTVTPRQNPPANQGATGITMGVGINSTVTIRAVEAGSPAATAGLQTGDRVVAIDGIRLESWFQAQNMLASVAGTTVPVTVQRDGREQTVSLAVP 468
            Q+Y  +V  GSPA  AGWQ GD +++V+G  +  + Q+  +    AGS   VT+ RG   + T+VTPR++PP  QG TG+ +     S V +  +  GS AA+AGLQT DR+V+IDGI +   F  +  LA   G    + V  +G  +TV ++VP
Sbjct:  119 QVYFTEVVPGSPAETAGWQTGDVVLSVEGEAIEDTSQIIRVTRDFAGSPMAVTLQRGGETVQTSVTPREDPPRGQGPTGVGLTTQTISDVFVGEIVPGSAAASAGLQTDDRIVSIDGIEVRDGFLVRTALADAQGRAATMLVDGEGDTRTVQVSVP 274          
BLAST of mRNA_P-wetherbeei_contig55765.1.1 vs. uniprot
Match: A0A3A0AHC1_9CHLR (Zinc metalloprotease n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3A0AHC1_9CHLR)

HSP 1 Score: 112 bits (279), Expect = 3.820e-26
Identity = 63/154 (40.91%), Postives = 91/154 (59.09%), Query Frame = 1
Query:    7 YIGQVAEGSPAFEAGWQPGDAIVAVDGTPVTSSGQLRDLISQHAGSQTEVTILRGDRELTTTVTPRQNPPANQGATGITMGVGINSTVTIRAVEAGSPAATAGLQTGDRVVAIDGIRLESWFQAQNMLASVAGTTVPVTVQRDGREQTVSLAVP 468
            YI +V  GSPA  AGWQPGD  V  +G  V S+ ++RDL  ++ G    V I R  + LTTTVTPR NPP +QG TGI +G    +T+ + AV   S AA AG+Q GD + +++G ++  +      +   AG T+ + + R G+  T+ +AVP
Sbjct:  122 YISEVLPGSPAAAAGWQPGDRFVTYNGHEVNSAREVRDLSERYEGQTFPVVIERAGQLLTTTVTPRVNPPVDQGRTGIRLGDSPIATLRVDAVPPDSVAAAAGIQAGDIITSVNGNQVTDYLSYSIPVREAAGQTISLGILRAGQALTLEVAVP 275          
BLAST of mRNA_P-wetherbeei_contig55765.1.1 vs. uniprot
Match: A0A6J4VIN5_9CHLR (Membrane-associated zinc metalloprotease n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4VIN5_9CHLR)

HSP 1 Score: 112 bits (281), Expect = 4.000e-26
Identity = 62/156 (39.74%), Postives = 92/156 (58.97%), Query Frame = 1
Query:    1 QIYIGQVAEGSPAFEAGWQPGDAIVAVDGTPVTSSGQLRDLISQHAGSQTEVTILRGDRELTTTVTPRQNPPANQGATGITMGVGINSTVTIRAVEAGSPAATAGLQTGDRVVAIDGIRLESWFQAQNMLASVAGTTVPVTVQRDGREQTVSLAVP 468
            ++Y+G V  G+PA  AG    D IV  +G  +  SGQL  + + + G   ++T+ RG  ELT +VTPR+NPPA QGATG+ +    ++++ I  +  G  A TAG+Q GDR++AIDG+ +         L +  G TV +TV+R G    + LAVP
Sbjct:  119 RVYVGSVVPGAPAAGAGILADDRIVRANGEEIEDSGQLIAITNDNRGQPLDLTLQRGGEELTVSVTPRENPPAGQGATGLGLLPITSASIEIETLVPGGAAETAGIQVGDRILAIDGVEMTDSVIFNRTLLAAQGETVTLTVERGGERIDLPLAVP 274          
BLAST of mRNA_P-wetherbeei_contig55765.1.1 vs. uniprot
Match: A0A6J4UPR4_9CHLR (Membrane-associated zinc metalloprotease n=1 Tax=uncultured Thermomicrobiales bacterium TaxID=1645740 RepID=A0A6J4UPR4_9CHLR)

HSP 1 Score: 110 bits (276), Expect = 1.950e-25
Identity = 64/154 (41.56%), Postives = 86/154 (55.84%), Query Frame = 1
Query:    7 YIGQVAEGSPAFEAGWQPGDAIVAVDGTPVTSSGQLRDLISQHAGSQTEVTILRGDRELTTTVTPRQNPPANQGATGITMGVGINSTVTIRAVEAGSPAATAGLQTGDRVVAIDGIRLESWFQAQNMLASVAGTTVPVTVQRDGREQTVSLAVP 468
            Y+  V  GSPA  AGW+PGD IVA DG  V S   L       AG +   T+ R  +   +TV PR++PPA +GATGI +     + V +  VE+GS AA AGL  GDR+ A+ G  ++  F     L    G+TV +TV+RD   + V+L VP
Sbjct:  121 YVNDVRPGSPAEAAGWRPGDRIVATDGDEVESVDDLVARTGDSAGRRVTFTLERDGQRFDSTVVPREDPPAGEGATGIVLSEATEAHVDVDRVESGSVAAVAGLAAGDRITAVAGQPVDDEFAVAEGLRRAQGSTVALTVERDDATRDVTLPVP 274          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55765.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W0KC08_9CHLR1.330e-4355.06Site-2 protease family protein (Fragment) n=1 Tax=... [more]
A0A7V9VHN0_9CHLR2.950e-3545.28Site-2 protease family protein n=1 Tax=Chloroflexi... [more]
A0A7V9B7G1_9CHLR1.510e-3447.06PDZ domain-containing protein (Fragment) n=1 Tax=C... [more]
A0A7V9VV00_9CHLR5.600e-3446.79RIP metalloprotease RseP n=1 Tax=Chloroflexia bact... [more]
A0A7V8WU51_9CHLR1.310e-2942.68Site-2 protease family protein n=1 Tax=Chloroflexi... [more]
A0A350T3U7_9CHLR1.070e-2840.00Zinc metalloprotease (Fragment) n=3 Tax=Chloroflex... [more]
A0A7V9VD23_9CHLR5.550e-2739.74Site-2 protease family protein n=1 Tax=Chloroflexi... [more]
A0A3A0AHC1_9CHLR3.820e-2640.91Zinc metalloprotease n=1 Tax=Chloroflexi bacterium... [more]
A0A6J4VIN5_9CHLR4.000e-2639.74Membrane-associated zinc metalloprotease n=1 Tax=u... [more]
A0A6J4UPR4_9CHLR1.950e-2541.56Membrane-associated zinc metalloprotease n=1 Tax=u... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55765contigP-wetherbeei_contig55765:23..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog309801.trd_1057
PFAMsPDZ_2,Peptidase_M50
Model size477
Max annot lvl189775|Thermomicrobia
KEGG koko:K11749
KEGG Pathwayko02024,ko04112,map02024,map04112
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.19e-30
EggNOG OGsCOG0750@1|root,COG0750@2|Bacteria,2G6HV@200795|Chloroflexi,27XS5@189775|Thermomicrobia
DescriptionDomain present in PSD-95, Dlg, and ZO-1/2.
Cds size477
COG categoryM
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186829.9781597-CDS-P-wetherbeei_contig55765:22..4991683186829.9781597-CDS-P-wetherbeei_contig55765:22..499Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55765 23..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55765.1.1prot_P-wetherbeei_contig55765.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55765 23..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55765.1.1

>prot_P-wetherbeei_contig55765.1.1 ID=prot_P-wetherbeei_contig55765.1.1|Name=mRNA_P-wetherbeei_contig55765.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
QIYIGQVAEGSPAFEAGWQPGDAIVAVDGTPVTSSGQLRDLISQHAGSQT
EVTILRGDRELTTTVTPRQNPPANQGATGITMGVGINSTVTIRAVEAGSP
AATAGLQTGDRVVAIDGIRLESWFQAQNMLASVAGTTVPVTVQRDGREQT
VSLAVPELT
back to top

mRNA from alignment at P-wetherbeei_contig55765:23..499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55765.1.1 ID=mRNA_P-wetherbeei_contig55765.1.1|Name=mRNA_P-wetherbeei_contig55765.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig55765:23..499+ (Phaeothamnion wetherbeei SAG_119_79)
CAGATCTACATCGGGCAGGTGGCGGAGGGCTCCCCCGCCTTCGAGGCCGG GTGGCAGCCGGGCGATGCCATCGTCGCCGTCGATGGCACGCCCGTCACCT CCTCCGGCCAGTTGCGCGATCTCATCTCCCAGCACGCCGGCAGCCAGACC GAGGTGACCATCCTCCGTGGCGACCGGGAGCTGACGACGACCGTCACCCC GCGCCAGAACCCGCCCGCCAACCAGGGCGCGACCGGCATCACGATGGGCG TGGGCATCAACTCGACCGTCACCATCCGTGCGGTCGAGGCCGGGTCCCCC GCCGCGACCGCCGGCCTCCAGACGGGCGACCGCGTCGTTGCAATCGATGG CATCCGCCTCGAATCCTGGTTCCAGGCCCAGAACATGCTCGCCAGTGTTG CAGGCACGACGGTGCCGGTGACCGTCCAGCGCGACGGCCGGGAGCAGACC GTCTCGCTCGCGGTCCCGGAGCTCACC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig55765:23..499+

>mRNA_P-wetherbeei_contig55765.1.1 ID=mRNA_P-wetherbeei_contig55765.1.1|Name=mRNA_P-wetherbeei_contig55765.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig55765:23..499+ (Phaeothamnion wetherbeei SAG_119_79)
CAGATCTACATCGGGCAGGTGGCGGAGGGCTCCCCCGCCTTCGAGGCCGG
GTGGCAGCCGGGCGATGCCATCGTCGCCGTCGATGGCACGCCCGTCACCT
CCTCCGGCCAGTTGCGCGATCTCATCTCCCAGCACGCCGGCAGCCAGACC
GAGGTGACCATCCTCCGTGGCGACCGGGAGCTGACGACGACCGTCACCCC
GCGCCAGAACCCGCCCGCCAACCAGGGCGCGACCGGCATCACGATGGGCG
TGGGCATCAACTCGACCGTCACCATCCGTGCGGTCGAGGCCGGGTCCCCC
GCCGCGACCGCCGGCCTCCAGACGGGCGACCGCGTCGTTGCAATCGATGG
CATCCGCCTCGAATCCTGGTTCCAGGCCCAGAACATGCTCGCCAGTGTTG
CAGGCACGACGGTGCCGGTGACCGTCCAGCGCGACGGCCGGGAGCAGACC
GTCTCGCTCGCGGTCCCGGAGCTCACC
back to top