mRNA_P-wetherbeei_contig55761.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55761.1.1
Unique NamemRNA_P-wetherbeei_contig55761.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55761.1.1 vs. uniprot
Match: UPI001C3E7950 (heavy-metal-associated domain-containing protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3E7950)

HSP 1 Score: 85.9 bits (211), Expect = 1.140e-20
Identity = 45/61 (73.77%), Postives = 49/61 (80.33%), Query Frame = 1
Query:   25 YVVEGMTCAHCRAAVAEEVGAVTGVTAVEVDLETGRLAVHGEGFDHAAIAAAVVEAGYAVR 207
            Y VEGMTCAHC AAVAEEV AV GV  VEVDLE+G L VHG+G D AA+AAAV EAGY +R
Sbjct:    8 YAVEGMTCAHCTAAVAEEVAAVPGVRDVEVDLESGALRVHGDGVDRAAVAAAVAEAGYTLR 68          
BLAST of mRNA_P-wetherbeei_contig55761.1.1 vs. uniprot
Match: UPI001FEADF7A (heavy-metal-associated domain-containing protein n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001FEADF7A)

HSP 1 Score: 80.1 bits (196), Expect = 2.210e-18
Identity = 44/64 (68.75%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   16 ERTYVVEGMTCAHCRAAVAEEVGAVTGVTAVEVDLETGRLAVHGEGFDHAAIAAAVVEAGYAVR 207
            ER Y V GMTC HCRAAV EEV AV GVT V+VDL TGRLAV G+G    AIAAAV EAGY ++
Sbjct:    4 ERIYTVAGMTCGHCRAAVTEEVVAVPGVTHVDVDLSTGRLAVVGDGITDEAIAAAVTEAGYTLQ 67          
BLAST of mRNA_P-wetherbeei_contig55761.1.1 vs. uniprot
Match: A0A7W8QPQ9_9ACTN (Copper chaperone CopZ n=1 Tax=Nocardiopsis composta TaxID=157465 RepID=A0A7W8QPQ9_9ACTN)

HSP 1 Score: 79.3 bits (194), Expect = 4.810e-18
Identity = 45/70 (64.29%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    1 MSWETERTYVVEGMTCAHCRAAVAEEVGAVTGVTAVEVDLETGRLAVHGEG-FDHAAIAAAVVEAGYAVR 207
            M+  T   + VEGMTC HC A+V EEVGAV GVT VEVDLETGR+AV G+G  D A + AAV EAGY VR
Sbjct:    1 MAGATTTVHTVEGMTCGHCAASVTEEVGAVPGVTGVEVDLETGRVAVSGDGPVDGALVRAAVQEAGYKVR 70          
BLAST of mRNA_P-wetherbeei_contig55761.1.1 vs. uniprot
Match: A0A7K0PFN2_9ACTN (HMA domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7K0PFN2_9ACTN)

HSP 1 Score: 78.6 bits (192), Expect = 9.710e-18
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   25 YVVEGMTCAHCRAAVAEEVGAVTGVTAVEVDLETGRLAVHGEGFDHAAIAAAVVEAGYAV 204
            YVV GMTC HC A+V EEV  V GVT V+VDL TGR+AVHGEG D  A+ AAV EAGY V
Sbjct:   10 YVVTGMTCRHCVASVTEEVSEVAGVTGVDVDLPTGRVAVHGEGVDEEAVVAAVAEAGYKV 69          
BLAST of mRNA_P-wetherbeei_contig55761.1.1 vs. uniprot
Match: UPI001F2848E7 (heavy-metal-associated domain-containing protein n=1 Tax=Spiractinospora alimapuensis TaxID=2820884 RepID=UPI001F2848E7)

HSP 1 Score: 78.6 bits (192), Expect = 1.080e-17
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 1
Query:   13 TERTYVVEGMTCAHCRAAVAEEVGAVTGVTAVEVDLETGRLAVHGEG-FDHAAIAAAVVEAGYAV 204
            T  +Y VEGMTC HC +AV EEVGAV GVT V+VDL TGRL V G+G FD AAI+AAV EAGY V
Sbjct:    7 TTASYAVEGMTCGHCVSAVTEEVGAVRGVTEVDVDLATGRLRVTGDGTFDDAAISAAVDEAGYTV 71          
BLAST of mRNA_P-wetherbeei_contig55761.1.1 vs. uniprot
Match: UPI000D097973 (cation transporter n=1 Tax=Actinocorallia populi TaxID=2079200 RepID=UPI000D097973)

HSP 1 Score: 77.0 bits (188), Expect = 3.470e-17
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 1
Query:   13 TERTYVVEGMTCAHCRAAVAEEVGAVTGVTAVEVDLETGRLAVHGEGFDHAAIAAAVVEAGYAV 204
            +ERTY V+GMTC HC+A+V EE+G ++GVT V+VDL++GR+ V GEGF    I  AV EAGY V
Sbjct:    2 SERTYTVQGMTCGHCKASVTEEIGELSGVTGVDVDLQSGRVVVSGEGFTDDEIRKAVEEAGYQV 65          
BLAST of mRNA_P-wetherbeei_contig55761.1.1 vs. uniprot
Match: A0A3N1CR01_9ACTN (Copper chaperone CopZ n=1 Tax=Actinocorallia herbida TaxID=58109 RepID=A0A3N1CR01_9ACTN)

HSP 1 Score: 76.3 bits (186), Expect = 7.000e-17
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   13 TERTYVVEGMTCAHCRAAVAEEVGAVTGVTAVEVDLETGRLAVHGEGFDHAAIAAAVVEAGYAV 204
            T+RTY V+GMTC HC A+V EEVG V+GVT V VDL  G + V G+GF   A+ AAV EAGYAV
Sbjct:    2 TQRTYTVQGMTCGHCEASVTEEVGEVSGVTGVAVDLTGGLVTVSGDGFTDDAVRAAVEEAGYAV 65          
BLAST of mRNA_P-wetherbeei_contig55761.1.1 vs. uniprot
Match: UPI0004912868 (heavy-metal-associated domain-containing protein n=1 Tax=Patulibacter americanus TaxID=588672 RepID=UPI0004912868)

HSP 1 Score: 75.5 bits (184), Expect = 1.570e-16
Identity = 41/68 (60.29%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 MSWETERTYVVEGMTCAHCRAAVAEEVGAVTGVTAVEVDLETGRLAVHGEGFDHAAIAAAVVEAGYAV 204
            MS      YVV+GMTC HC A+V EEV  V GVT V+VDL +GR+AVHG G D  A+ AAV EAGY V
Sbjct:    1 MSTAETHQYVVQGMTCQHCVASVTEEVSEVGGVTGVDVDLASGRVAVHGTGVDEEAVVAAVSEAGYKV 68          
BLAST of mRNA_P-wetherbeei_contig55761.1.1 vs. uniprot
Match: UPI001671687C (heavy-metal-associated domain-containing protein n=1 Tax=Planomonospora parontospora TaxID=58119 RepID=UPI001671687C)

HSP 1 Score: 74.7 bits (182), Expect = 3.080e-16
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   22 TYVVEGMTCAHCRAAVAEEVGAVTGVTAVEVDLETGRLAVHGEG-FDHAAIAAAVVEAGYAV 204
            TY V GMTC HC ++V EE+GAV GVT V+VDL TGR++V G+G  D AAIAAAV EAGY V
Sbjct:    4 TYTVAGMTCGHCVSSVTEEIGAVPGVTGVDVDLATGRVSVDGDGPIDAAAIAAAVAEAGYEV 65          
BLAST of mRNA_P-wetherbeei_contig55761.1.1 vs. uniprot
Match: UPI00047E4D49 (heavy-metal-associated domain-containing protein n=1 Tax=Patulibacter minatonensis TaxID=298163 RepID=UPI00047E4D49)

HSP 1 Score: 74.3 bits (181), Expect = 4.600e-16
Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   10 ETERTYVVEGMTCAHCRAAVAEEVGAVTGVTAVEVDLETGRLAVHGEGFDHAAIAAAVVEAGYAV 204
            E    YVV GMTC HC A+V EEV  V GV+AV+VDL TGR+AVHG   D  A+ AAV EAGY V
Sbjct:    5 EAPLQYVVTGMTCQHCVASVTEEVSEVAGVSAVDVDLATGRVAVHGSDVDEEAVVAAVTEAGYKV 69          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55761.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3E79501.140e-2073.77heavy-metal-associated domain-containing protein n... [more]
UPI001FEADF7A2.210e-1868.75heavy-metal-associated domain-containing protein n... [more]
A0A7W8QPQ9_9ACTN4.810e-1864.29Copper chaperone CopZ n=1 Tax=Nocardiopsis compost... [more]
A0A7K0PFN2_9ACTN9.710e-1868.33HMA domain-containing protein n=2 Tax=root TaxID=1... [more]
UPI001F2848E71.080e-1769.23heavy-metal-associated domain-containing protein n... [more]
UPI000D0979733.470e-1759.38cation transporter n=1 Tax=Actinocorallia populi T... [more]
A0A3N1CR01_9ACTN7.000e-1762.50Copper chaperone CopZ n=1 Tax=Actinocorallia herbi... [more]
UPI00049128681.570e-1660.29heavy-metal-associated domain-containing protein n... [more]
UPI001671687C3.080e-1666.13heavy-metal-associated domain-containing protein n... [more]
UPI00047E4D494.600e-1661.54heavy-metal-associated domain-containing protein n... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55761contigP-wetherbeei_contig55761:197..409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1122939.ATUD01000001_gene260
PFAMsHMA
Model size213
Max annot lvl84995|Rubrobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.57e-17
EggNOG OGsCOG2608@1|root,COG2608@2|Bacteria,2HPEX@201174|Actinobacteria,4CQT9@84995|Rubrobacteria
DescriptionHeavy-metal-associated domain
Cds size213
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186829.8729327-CDS-P-wetherbeei_contig55761:196..4091683186829.8729327-CDS-P-wetherbeei_contig55761:196..409Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55761 197..409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55761.1.1prot_P-wetherbeei_contig55761.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55761 197..409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55761.1.1

>prot_P-wetherbeei_contig55761.1.1 ID=prot_P-wetherbeei_contig55761.1.1|Name=mRNA_P-wetherbeei_contig55761.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=71bp
MSWETERTYVVEGMTCAHCRAAVAEEVGAVTGVTAVEVDLETGRLAVHGE
GFDHAAIAAAVVEAGYAVRP*
back to top

mRNA from alignment at P-wetherbeei_contig55761:197..409-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55761.1.1 ID=mRNA_P-wetherbeei_contig55761.1.1|Name=mRNA_P-wetherbeei_contig55761.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig55761:197..409- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTGGGAGACCGAGAGGACGTACGTCGTCGAGGGCATGACCTGCGC CCACTGCCGGGCTGCCGTCGCCGAGGAGGTCGGTGCGGTCACGGGTGTCA CTGCGGTCGAGGTCGATCTCGAGACCGGGCGCCTGGCCGTCCACGGGGAG GGCTTTGATCACGCGGCCATCGCAGCCGCCGTTGTCGAGGCCGGCTACGC GGTGCGGCCGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig55761:197..409-

>mRNA_P-wetherbeei_contig55761.1.1 ID=mRNA_P-wetherbeei_contig55761.1.1|Name=mRNA_P-wetherbeei_contig55761.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig55761:197..409- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTGGGAGACCGAGAGGACGTACGTCGTCGAGGGCATGACCTGCGC
CCACTGCCGGGCTGCCGTCGCCGAGGAGGTCGGTGCGGTCACGGGTGTCA
CTGCGGTCGAGGTCGATCTCGAGACCGGGCGCCTGGCCGTCCACGGGGAG
GGCTTTGATCACGCGGCCATCGCAGCCGCCGTTGTCGAGGCCGGCTACGC
GGTGCGGCCGTGA
back to top