mRNA_P-wetherbeei_contig55755.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55755.1.1
Unique NamemRNA_P-wetherbeei_contig55755.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55755.1.1 vs. uniprot
Match: A0A318BA62_9NOSO (HTH araC/xylS-type domain-containing protein n=1 Tax=Nostoc sp. 3335mG TaxID=2204170 RepID=A0A318BA62_9NOSO)

HSP 1 Score: 251 bits (642), Expect = 8.570e-82
Identity = 132/180 (73.33%), Postives = 144/180 (80.00%), Query Frame = 1
Query:    1 ICQFAWPDSP----AGPGYLLPRSSETMHVQAMVRLSLDLAGGT---DIDRRRRLLVAMLDCFAHPTDAVPTQPPTEDDGLIAAWGQAGKALHKMRTLSDVAALMDVHESALRARHRRHYRTSAGSHLREMRLRRAEDLLSTTRYTVGEIAQLVGYGHAETFIAAFHRSRGRTPVEFRHR 519
            IC F WP +      GPGYLLPR +E +HVQAM+RLSLDLA G    D+ RRRRLL+AMLDCF HP  A   +  T DDGL  AW  A ++LHKMRTLSDVAA++ VHESALRARHRR YRTSAGSHLREMRLRRAEDLLSTTRYT+ EIAQLVGYGHAETFIAAFHRSRG TP EFRHR
Sbjct:   83 ICHFDWPAAGERGLGGPGYLLPRQNEALHVQAMLRLSLDLARGRHEPDLQRRRRLLLAMLDCFEHPAAATSAEATTGDDGLERAWFHATRSLHKMRTLSDVAAVIGVHESALRARHRRQYRTSAGSHLREMRLRRAEDLLSTTRYTLSEIAQLVGYGHAETFIAAFHRSRGCTPGEFRHR 262          
BLAST of mRNA_P-wetherbeei_contig55755.1.1 vs. uniprot
Match: A0A1E4E2W9_9HYPH (HTH araC/xylS-type domain-containing protein n=3 Tax=Devosiaceae TaxID=2831106 RepID=A0A1E4E2W9_9HYPH)

HSP 1 Score: 244 bits (622), Expect = 8.190e-79
Identity = 130/177 (73.45%), Postives = 141/177 (79.66%), Query Frame = 1
Query:    1 ICQFAWPDSPAG-PGYLLPRSSETMHVQAMVRLSLDLAGGT---DIDRRRRLLVAMLDCFAHPTDAVPTQPPTEDDGLIAAWGQAGKALHKMRTLSDVAALMDVHESALRARHRRHYRTSAGSHLREMRLRRAEDLLSTTRYTVGEIAQLVGYGHAETFIAAFHRSRGRTPVEFRHR 519
            IC F    +    PGYLLPR  E MHVQ+M+RLSLDLA  T   D+ RR RLL+A+LDCF HP  A   +P   DDGL  AWGQA K+LHKMRTLSDVAA+M VHESALRARHRR Y TSAGSHLREMRLRRAEDLLSTTRYT+GEIA+LVGYGHAETFIAAFHRSRG TP EFRHR
Sbjct:   83 ICHFTMASAQTSDPGYLLPRPGEAMHVQSMLRLSLDLANTTTTVDLQRRHRLLLAILDCFDHPA-ATYNEPAPSDDGLDMAWGQATKSLHKMRTLSDVAAVMGVHESALRARHRRQYHTSAGSHLREMRLRRAEDLLSTTRYTLGEIARLVGYGHAETFIAAFHRSRGCTPGEFRHR 258          
BLAST of mRNA_P-wetherbeei_contig55755.1.1 vs. uniprot
Match: A0A087M771_9HYPH (HTH araC/xylS-type domain-containing protein n=1 Tax=Devosia riboflavina TaxID=46914 RepID=A0A087M771_9HYPH)

HSP 1 Score: 243 bits (620), Expect = 1.600e-78
Identity = 132/177 (74.58%), Postives = 141/177 (79.66%), Query Frame = 1
Query:    1 ICQFAWPDSPA-GPGYLLPRSSETMHVQAMVRLSLDLAGGT---DIDRRRRLLVAMLDCFAHPTDAVPTQPPTEDDGLIAAWGQAGKALHKMRTLSDVAALMDVHESALRARHRRHYRTSAGSHLREMRLRRAEDLLSTTRYTVGEIAQLVGYGHAETFIAAFHRSRGRTPVEFRHR 519
            IC F    +    PGYLLPR  E MH+QAM+RLSL LAG T   D+ RRRRLL+AMLDCF  P  A    P   DDGL  AWGQA K+LHKMRTLSDVAA+M VHESALRARHRR YRTSAGSHLREMRLRRAEDLLSTTRYT+GEIA+LVGYGHAETFIAAFHRSRG TP EFRHR
Sbjct:   82 ICHFTLVGTETIDPGYLLPRPGEAMHIQAMLRLSLGLAGATAEPDLQRRRRLLLAMLDCFDIPK-ATTHAPEPSDDGLDMAWGQATKSLHKMRTLSDVAAVMGVHESALRARHRRQYRTSAGSHLREMRLRRAEDLLSTTRYTLGEIARLVGYGHAETFIAAFHRSRGCTPGEFRHR 257          
BLAST of mRNA_P-wetherbeei_contig55755.1.1 vs. uniprot
Match: A0A0F5FTE7_9HYPH (HTH araC/xylS-type domain-containing protein n=1 Tax=Devosia geojensis TaxID=443610 RepID=A0A0F5FTE7_9HYPH)

HSP 1 Score: 243 bits (619), Expect = 2.570e-78
Identity = 127/180 (70.56%), Postives = 140/180 (77.78%), Query Frame = 1
Query:    1 ICQFAWPDSPA----GPGYLLPRSSETMHVQAMVRLSLDLAGG---TDIDRRRRLLVAMLDCFAHPTDAVPTQPPTEDDGLIAAWGQAGKALHKMRTLSDVAALMDVHESALRARHRRHYRTSAGSHLREMRLRRAEDLLSTTRYTVGEIAQLVGYGHAETFIAAFHRSRGRTPVEFRHR 519
            IC F WPD+ A    GPGYL PR  + +H+QAM+RLSLDLAG     D DRRRRLL+A+LDCF HP  AV    P  D  L  AW QA K L K+RTLSDVAAL+ VHESALRARHRR YRTSAG HLREMRLRRAEDLLSTTR+++GEIA LVGYGHAETFIAAFHRSRG TP +FRHR
Sbjct:   82 ICHFEWPDAAALGLDGPGYLRPRPGDALHIQAMLRLSLDLAGSIVAVDADRRRRLLLAILDCFQHPAVAVDAPAPELDRALEMAWRQAAKTLPKIRTLSDVAALLGVHESALRARHRRFYRTSAGGHLREMRLRRAEDLLSTTRHSIGEIAHLVGYGHAETFIAAFHRSRGCTPGQFRHR 261          
BLAST of mRNA_P-wetherbeei_contig55755.1.1 vs. uniprot
Match: A0A1K2HZN1_9HYPH (AraC-type DNA-binding protein n=1 Tax=Devosia enhydra TaxID=665118 RepID=A0A1K2HZN1_9HYPH)

HSP 1 Score: 229 bits (585), Expect = 4.920e-73
Identity = 124/179 (69.27%), Postives = 138/179 (77.09%), Query Frame = 1
Query:    1 ICQFAWPDS-PA--GPGYLLPRSSETMHVQAMVRLSLDLAGG---TDIDRRRRLLVAMLDCFAHPTDAVPTQPPTEDDGLIAAWGQAGKALHKMRTLSDVAALMDVHESALRARHRRHYRTSAGSHLREMRLRRAEDLLSTTRYTVGEIAQLVGYGHAETFIAAFHRSRGRTPVEFRHR 519
            IC F+WP + PA  GPG+ L R  E +HVQAM+RLSLDL  G    D+ RR+RLL A++DCF  P  A P      D GL  AW QA  ALHKMRTLSDVAALM VHESALRARHRRHYRTSAGSHLRE+RLRRAEDLL+TTR+ +GEIA+ VGYGHAETFIAAF RSRG TP EFRHR
Sbjct:   92 ICHFSWPGAAPAFQGPGHRLVRPGEALHVQAMLRLSLDLVSGQGAADLARRQRLLRAIIDCFDGPAPAAPDTAAPRDAGLELAWRQALSALHKMRTLSDVAALMGVHESALRARHRRHYRTSAGSHLRELRLRRAEDLLATTRFPLGEIARTVGYGHAETFIAAFQRSRGCTPGEFRHR 270          
BLAST of mRNA_P-wetherbeei_contig55755.1.1 vs. uniprot
Match: A0A0F5Q8M3_9HYPH (HTH araC/xylS-type domain-containing protein n=2 Tax=Devosia epidermidihirudinis TaxID=1293439 RepID=A0A0F5Q8M3_9HYPH)

HSP 1 Score: 186 bits (473), Expect = 4.370e-56
Identity = 99/175 (56.57%), Postives = 130/175 (74.29%), Query Frame = 1
Query:    1 ICQFAWPDSPAGPGYLLPRSSETMHVQAMVRLSLDLAGGTD---IDRRRRLLVAMLDCFAHPTDAVPTQPPTEDDGLIAAWGQAGKALHKMRTLSDVAALMDVHESALRARHRRHYRTSAGSHLREMRLRRAEDLLSTTRYTVGEIAQLVGYGHAETFIAAFHRSRGRTPVEFRH 516
            IC F   D PAGPG+L+P   E +H+Q ++RLSL+LA   D     RR+RLL+A+LDCF  P+        ++++ L  AW QA  +L KMRTLSDVAAL+ VHESALR+ HR  ++TSAG++LRE+RL+RAE+LL+TT YTV E+A+LVGYGHAET  +AF +SRGRTP +FRH
Sbjct:   96 ICHFI-ADHPAGPGFLVPNPGEELHIQNLLRLSLELARKPDEANAMRRKRLLLAILDCFGPPSAVSQPVASSQNERLAMAWQQADTSLRKMRTLSDVAALIGVHESALRSMHRNVHQTSAGTYLRELRLKRAEELLATTGYTVREVARLVGYGHAETLNSAFLKSRGRTPGQFRH 269          
BLAST of mRNA_P-wetherbeei_contig55755.1.1 vs. uniprot
Match: A0A4V1T8B2_9HYPH (AraC family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A4V1T8B2_9HYPH)

HSP 1 Score: 172 bits (437), Expect = 7.700e-51
Identity = 89/175 (50.86%), Postives = 120/175 (68.57%), Query Frame = 1
Query:    1 ICQFAWPDSPAGPGYLLPRSSETMHVQAMVRLSLDLAG---GTDIDRRRRLLVAMLDCFAHPTDAVPTQPPTEDDGLIAAWGQAGKALHKMRTLSDVAALMDVHESALRARHRRHYRTSAGSHLREMRLRRAEDLLSTTRYTVGEIAQLVGYGHAETFIAAFHRSRGRTPVEFRH 516
            IC F     PAGPGY LP   E +H+Q ++RL++ LA      ++ RR+RLL+++LD FA P   +P  P  ++D L  AW QAG+ LH+MRTL+DVAAL+ + ESALRA HR+   TSAG HLRE+RL R+E+LL +T  ++  IA  VGYGHA T  AAF + RG+TP ++RH
Sbjct:   82 ICHFTMAGEPAGPGYALPNPDEALHLQNLIRLAMHLARRNRSDELPRRKRLLLSLLDGFARP--GIPEAPTIDEDRLTIAWTQAGQNLHRMRTLADVAALLGISESALRAMHRKARHTSAGEHLRELRLARSEELLVSTDKSLATIAAEVGYGHAATLAAAFRKRRGKTPGQYRH 254          
BLAST of mRNA_P-wetherbeei_contig55755.1.1 vs. uniprot
Match: A0A1E5XML9_9HYPH (HTH araC/xylS-type domain-containing protein n=5 Tax=Devosia TaxID=46913 RepID=A0A1E5XML9_9HYPH)

HSP 1 Score: 167 bits (423), Expect = 9.940e-49
Identity = 88/175 (50.29%), Postives = 119/175 (68.00%), Query Frame = 1
Query:    1 ICQFAWPDSPAGPGYLLPRSSETMHVQAMVRLSLDLAGGT---DIDRRRRLLVAMLDCFAHPTDAVPTQPPTEDDGLIAAWGQAGKALHKMRTLSDVAALMDVHESALRARHRRHYRTSAGSHLREMRLRRAEDLLSTTRYTVGEIAQLVGYGHAETFIAAFHRSRGRTPVEFRH 516
            IC FA    PAGPGY LP   E +H+Q ++RL++ LA      ++ RR+RLL+++LD F      +P  P  ++D L  AW QAG+ LH+MRTL+DVAAL+ + ESALRA HR+   TSAG HLRE+RL R+E+LL +T  ++  IA  VGYGHA T  AAF + RG+TP ++RH
Sbjct:   82 ICHFAMAGEPAGPGYALPNPDEALHLQNLIRLAMHLARRNRPDELPRRKRLLLSLLDGF--DLAGIPDIPTADEDRLTIAWTQAGQNLHRMRTLADVAALLGISESALRAMHRKARHTSAGEHLRELRLTRSEELLVSTDKSLATIAAEVGYGHAATLAAAFRKRRGKTPGQYRH 254          
BLAST of mRNA_P-wetherbeei_contig55755.1.1 vs. uniprot
Match: A0A4Q3DWS9_9HYPH (AraC family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A4Q3DWS9_9HYPH)

HSP 1 Score: 162 bits (411), Expect = 1.020e-46
Identity = 93/174 (53.45%), Postives = 116/174 (66.67%), Query Frame = 1
Query:    1 ICQFAWPDSPAGPGYLLPRSSETMHVQAMVRLSLDLAG---GTDIDRRRRLLVAMLDCFAHPTDAVPTQPPTEDDGLIAAWGQAGKALHKMRTLSDVAALMDVHESALRARHRRHYRTSAGSHLREMRLRRAEDLLSTTRYTVGEIAQLVGYGHAETFIAAFHRSRGRTPVEFR 513
            IC F       GPG+LLPR  E +HVQ M++L+++LA      D+ RR+RLL+++LD FA    A P    T D  L AAW QAG+ LH+MRTLSDVAAL+ V ES LRA HR  + TSAG HLRE+RL RAE+L+  T  T+ EIA+ VGY HA T  AAF   RG+TP E+R
Sbjct:  100 ICHFELAGYHEGPGWLLPRPGEALHVQNMLKLAMELARHDRADDLARRKRLLLSLLDGFAP---AAPAAASTVDGRLAAAWRQAGQNLHRMRTLSDVAALLGVSESTLRAMHRLAWHTSAGEHLRELRLTRAEELIVGTDKTLVEIAEAVGYRHAATLSAAFRDRRGKTPGEYR 270          
BLAST of mRNA_P-wetherbeei_contig55755.1.1 vs. uniprot
Match: A0A1M3KSX4_9HYPH (HTH araC/xylS-type domain-containing protein n=1 Tax=Devosia sp. 66-22 TaxID=1895753 RepID=A0A1M3KSX4_9HYPH)

HSP 1 Score: 154 bits (390), Expect = 1.150e-43
Identity = 86/174 (49.43%), Postives = 113/174 (64.94%), Query Frame = 1
Query:    1 ICQFAWPDSPAGPGYLLPRSSETMHVQAMVRLSLDLAGGT---DIDRRRRLLVAMLDCFAHPTDAVPTQPPTEDDGLIAAWGQAGKALHKMRTLSDVAALMDVHESALRARHRRHYRTSAGSHLREMRLRRAEDLLSTTRYTVGEIAQLVGYGHAETFIAAFHRSRGRTPVEFR 513
            IC F        PG+LLPR  E +H+Q M++L+++LA      ++ RR+RLL+ +LD FA    A P    T D  L  AW QA + LH+MRTL+DVAAL+ + ESALRA HR  +  SAG HLRE+RL RAE+L+ +T  T+ EIA+ VGY HA T  AAF   RG+TP E+R
Sbjct:   91 ICHFELASDDERPGWLLPRGGEALHLQNMIKLAMELARRDRPDEVARRKRLLLTLLDGFAP---AAPAASATLDGRLATAWRQAAQNLHRMRTLADVAALLGISESALRALHRDAWHMSAGEHLRELRLTRAEELIVSTDKTLAEIAEAVGYRHAATLSAAFRARRGKTPGEYR 261          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55755.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A318BA62_9NOSO8.570e-8273.33HTH araC/xylS-type domain-containing protein n=1 T... [more]
A0A1E4E2W9_9HYPH8.190e-7973.45HTH araC/xylS-type domain-containing protein n=3 T... [more]
A0A087M771_9HYPH1.600e-7874.58HTH araC/xylS-type domain-containing protein n=1 T... [more]
A0A0F5FTE7_9HYPH2.570e-7870.56HTH araC/xylS-type domain-containing protein n=1 T... [more]
A0A1K2HZN1_9HYPH4.920e-7369.27AraC-type DNA-binding protein n=1 Tax=Devosia enhy... [more]
A0A0F5Q8M3_9HYPH4.370e-5656.57HTH araC/xylS-type domain-containing protein n=2 T... [more]
A0A4V1T8B2_9HYPH7.700e-5150.86AraC family transcriptional regulator n=1 Tax=Hyph... [more]
A0A1E5XML9_9HYPH9.940e-4950.29HTH araC/xylS-type domain-containing protein n=5 T... [more]
A0A4Q3DWS9_9HYPH1.020e-4653.45AraC family transcriptional regulator n=1 Tax=Hyph... [more]
A0A1M3KSX4_9HYPH1.150e-4349.43HTH araC/xylS-type domain-containing protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55755contigP-wetherbeei_contig55755:3..521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1114970.PSF113_0983
PFAMsHTH_18,Response_reg
Model size519
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.38e-08
EggNOG OGsCOG0745@1|root,COG4977@1|root,COG0745@2|Bacteria,COG4977@2|Bacteria,1RBWM@1224|Proteobacteria,1S5C7@1236|Gammaproteobacteria
Descriptionhelix_turn_helix, arabinose operon control protein
Cds size519
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186829.7713177-CDS-P-wetherbeei_contig55755:2..5211683186829.7713177-CDS-P-wetherbeei_contig55755:2..521Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55755 3..521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55755.1.1prot_P-wetherbeei_contig55755.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55755 3..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55755.1.1

>prot_P-wetherbeei_contig55755.1.1 ID=prot_P-wetherbeei_contig55755.1.1|Name=mRNA_P-wetherbeei_contig55755.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
ICQFAWPDSPAGPGYLLPRSSETMHVQAMVRLSLDLAGGTDIDRRRRLLV
AMLDCFAHPTDAVPTQPPTEDDGLIAAWGQAGKALHKMRTLSDVAALMDV
HESALRARHRRHYRTSAGSHLREMRLRRAEDLLSTTRYTVGEIAQLVGYG
HAETFIAAFHRSRGRTPVEFRHR
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mRNA from alignment at P-wetherbeei_contig55755:3..521-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55755.1.1 ID=mRNA_P-wetherbeei_contig55755.1.1|Name=mRNA_P-wetherbeei_contig55755.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig55755:3..521- (Phaeothamnion wetherbeei SAG_119_79)
ATCTGCCAGTTCGCCTGGCCCGACAGCCCGGCCGGTCCCGGCTATCTGCT GCCCAGGTCCAGCGAAACCATGCATGTGCAGGCCATGGTGCGACTGAGCC TCGATCTCGCGGGCGGCACCGATATCGACCGCCGCCGCCGGTTGCTGGTC GCCATGCTCGATTGTTTCGCCCACCCCACAGATGCAGTTCCGACTCAGCC GCCAACCGAAGACGATGGGCTCATTGCCGCCTGGGGCCAGGCCGGCAAGG CGCTGCACAAGATGCGCACGCTGAGCGATGTGGCCGCCTTGATGGATGTG CATGAAAGCGCCCTGCGCGCCCGCCACCGCCGGCACTACCGCACATCGGC AGGCAGCCACCTGCGCGAAATGCGCCTGCGGCGCGCCGAGGACCTGCTCT CGACCACAAGATACACGGTCGGCGAGATTGCCCAGCTCGTCGGTTATGGC CACGCCGAAACCTTTATCGCCGCCTTTCACCGCAGCCGCGGCCGCACGCC GGTCGAATTTCGCCACCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55755:3..521-

>mRNA_P-wetherbeei_contig55755.1.1 ID=mRNA_P-wetherbeei_contig55755.1.1|Name=mRNA_P-wetherbeei_contig55755.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig55755:3..521- (Phaeothamnion wetherbeei SAG_119_79)
ATCTGCCAGTTCGCCTGGCCCGACAGCCCGGCCGGTCCCGGCTATCTGCT
GCCCAGGTCCAGCGAAACCATGCATGTGCAGGCCATGGTGCGACTGAGCC
TCGATCTCGCGGGCGGCACCGATATCGACCGCCGCCGCCGGTTGCTGGTC
GCCATGCTCGATTGTTTCGCCCACCCCACAGATGCAGTTCCGACTCAGCC
GCCAACCGAAGACGATGGGCTCATTGCCGCCTGGGGCCAGGCCGGCAAGG
CGCTGCACAAGATGCGCACGCTGAGCGATGTGGCCGCCTTGATGGATGTG
CATGAAAGCGCCCTGCGCGCCCGCCACCGCCGGCACTACCGCACATCGGC
AGGCAGCCACCTGCGCGAAATGCGCCTGCGGCGCGCCGAGGACCTGCTCT
CGACCACAAGATACACGGTCGGCGAGATTGCCCAGCTCGTCGGTTATGGC
CACGCCGAAACCTTTATCGCCGCCTTTCACCGCAGCCGCGGCCGCACGCC
GGTCGAATTTCGCCACCGC
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