mRNA_P-wetherbeei_contig55723.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55723.1.1
Unique NamemRNA_P-wetherbeei_contig55723.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55723.1.1 vs. uniprot
Match: UPI001C026CE3 (hypothetical protein n=3 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001C026CE3)

HSP 1 Score: 70.1 bits (170), Expect = 4.140e-14
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:   28 MLKTISAALLAASVLVVAPAMAHGPGRTAHGA-TVYVQPGVFDAHARMGRHHH 183
            MLKTISAALLAASVL VAPAMAHGP RT H   +VYV P V +++A MGRHHH
Sbjct:    1 MLKTISAALLAASVLAVAPAMAHGPDRTGHVPDSVYVNPDVLNSNAWMGRHHH 53
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BLAST of mRNA_P-wetherbeei_contig55723.1.1 vs. uniprot
Match: UPI001BA9BC25 (hypothetical protein n=3 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BA9BC25)

HSP 1 Score: 50.4 bits (119), Expect = 3.000e-6
Identity = 32/54 (59.26%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   28 MLKTISAALLAASVLVVAPAMAHGPGRTAHGATVYVQPGV--FDAHARMGRHHH 183
            M KTISAALLA SVL  APA+A  PG+T H      Q     F+A+ARMGRHHH
Sbjct:    1 MFKTISAALLAVSVLA-APALAGSPGKTMHAPIRAEQANANFFNANARMGRHHH 53
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BLAST of mRNA_P-wetherbeei_contig55723.1.1 vs. uniprot
Match: A0A525KD22_BRASZ (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525KD22_BRASZ)

HSP 1 Score: 50.8 bits (120), Expect = 3.340e-6
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   13 KRDTTMLKTISAALLAASVLVVAPAMAHGPGRTAHGAT---VYVQPGVFDAHARMGRHHH 183
            K++TTMLKTISAALLA SVL  APA A   G+         V  +  V +A+A+MGRHHH
Sbjct:   16 KQETTMLKTISAALLAVSVLA-APAFAANAGKDTQAPVIKAVQAKTSVLNANAKMGRHHH 74
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BLAST of mRNA_P-wetherbeei_contig55723.1.1 vs. uniprot
Match: UPI001FD96A9B (hypothetical protein n=1 Tax=Bradyrhizobium sp. URHD0069 TaxID=1380355 RepID=UPI001FD96A9B)

HSP 1 Score: 48.9 bits (115), Expect = 1.490e-5
Identity = 31/58 (53.45%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:   13 KRDTTMLKTISAALLAASVLVVAPAMAHGPGRTAHGA---TVYVQPGVFDAHARMGRH 177
            K++ TMLKTISAALLA SVL  APA+A G G+T       T  V+P V + +A+MG H
Sbjct:   17 KQEMTMLKTISAALLAVSVLA-APALAAGSGKTTQAPAAKTAQVKPNVMNPNAKMGPH 73
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BLAST of mRNA_P-wetherbeei_contig55723.1.1 vs. uniprot
Match: A0A1H1N8A0_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium canariense TaxID=255045 RepID=A0A1H1N8A0_9BRAD)

HSP 1 Score: 47.8 bits (112), Expect = 3.470e-5
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:   28 MLKTISAALLAASVLVVAPAMAHGPGRTAHGATVYVQP---GVFDAHARMGRHHH 183
            M KTISAALLA SVL  APAMA G  +T H   V  +     V +A+A+MGRHHH
Sbjct:    1 MFKTISAALLAVSVLA-APAMATGALKTTHAPAVKTEQMKRNVLNANAKMGRHHH 54
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55723.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI001C026CE34.140e-1473.58hypothetical protein n=3 Tax=unclassified Bradyrhi... [more]
UPI001BA9BC253.000e-659.26hypothetical protein n=3 Tax=Bradyrhizobium TaxID=... [more]
A0A525KD22_BRASZ3.340e-653.33Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
UPI001FD96A9B1.490e-553.45hypothetical protein n=1 Tax=Bradyrhizobium sp. UR... [more]
A0A1H1N8A0_9BRAD3.470e-556.36Uncharacterized protein n=1 Tax=Bradyrhizobium can... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55723contigP-wetherbeei_contig55723:83..337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size255
Hectar predicted targeting categorysignal peptide
Exons1
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186829.5437565-CDS-P-wetherbeei_contig55723:82..3101683186829.5437565-CDS-P-wetherbeei_contig55723:82..310Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55723 83..310 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186829.5547407-UTR-P-wetherbeei_contig55723:310..3371683186829.5547407-UTR-P-wetherbeei_contig55723:310..337Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig55723 311..337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55723.1.1prot_P-wetherbeei_contig55723.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55723 83..310 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55723.1.1

>prot_P-wetherbeei_contig55723.1.1 ID=prot_P-wetherbeei_contig55723.1.1|Name=mRNA_P-wetherbeei_contig55723.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp
MLKTISAALLAASVLVVAPAMAHGPGRTAHGATVYVQPGVFDAHARMGRH
HHYRHHHHRHHHKHFRHHHRFHGHH*
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mRNA from alignment at P-wetherbeei_contig55723:83..337-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55723.1.1 ID=mRNA_P-wetherbeei_contig55723.1.1|Name=mRNA_P-wetherbeei_contig55723.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig55723:83..337- (Phaeothamnion wetherbeei SAG_119_79)
CCTCGCGATTTCAAGAGGGACACGACCATGCTGAAGACAATTTCCGCCGC
ACTGCTTGCGGCTTCCGTGCTTGTGGTGGCGCCCGCGATGGCCCACGGCC
CGGGCCGGACCGCGCATGGCGCGACCGTGTACGTGCAGCCGGGCGTGTTC
GACGCTCATGCCAGGATGGGGCGCCATCATCACTACCGCCATCATCATCA
CCGGCATCACCACAAGCATTTCCGTCATCACCATCGTTTCCACGGTCATC
ACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55723:83..337-

>mRNA_P-wetherbeei_contig55723.1.1 ID=mRNA_P-wetherbeei_contig55723.1.1|Name=mRNA_P-wetherbeei_contig55723.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig55723:83..337- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGAAGACAATTTCCGCCGCACTGCTTGCGGCTTCCGTGCTTGTGGT
GGCGCCCGCGATGGCCCACGGCCCGGGCCGGACCGCGCATGGCGCGACCG
TGTACGTGCAGCCGGGCGTGTTCGACGCTCATGCCAGGATGGGGCGCCAT
CATCACTACCGCCATCATCATCACCGGCATCACCACAAGCATTTCCGTCA
TCACCATCGTTTCCACGGTCATCACTGA
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