mRNA_P-wetherbeei_contig5570.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5570.2.1
Unique NamemRNA_P-wetherbeei_contig5570.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5570.2.1 vs. uniprot
Match: A0A835ZBM9_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBM9_9STRA)

HSP 1 Score: 137 bits (346), Expect = 7.490e-37
Identity = 74/120 (61.67%), Postives = 90/120 (75.00%), Query Frame = 1
Query:   34 SVASLHEFHAASADIARGIHVTSQQLSQLTKLVQRRGLFNDPADDINTLVHSIKEGIQGLNGQLDSTQAYVEHQRRKLGQ----QPANHSAHVVGQLKTELMETTKAFKDVLQQRSLNLK 381
            SV++L EFH A++ IA+ IHVTSQ+LSQLTKLVQ RGLFNDPA +IN LVH IK+ IQG+N QLD  Q YV+ ++ ++      Q ANHS +VVGQLK EL+  TK FKDVLQ RS  LK
Sbjct:   31 SVSTLSEFHGATSSIAKEIHVTSQKLSQLTKLVQSRGLFNDPAQEINELVHDIKQDIQGINTQLDQAQTYVDSRKTQMAGGAQGQHANHSINVVGQLKAELLNATKTFKDVLQVRSSKLK 150          
BLAST of mRNA_P-wetherbeei_contig5570.2.1 vs. uniprot
Match: D8LIS8_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIS8_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 3.670e-34
Identity = 68/117 (58.12%), Postives = 91/117 (77.78%), Query Frame = 1
Query:   37 VASLHEFHAASADIARGIHVTSQQLSQLTKLVQRRGLFNDPADDINTLVHSIKEGIQGLNGQLDSTQAYVEHQRRKLGQ--QPANHSAHVVGQLKTELMETTKAFKDVLQQRSLNLK 381
            V++L EFH+A++ IA+ IH  SQ+L  LTKLVQ+RGLFNDP  +IN+LVH IK+ +Q LN +LD++Q YV  +++++G   Q ANHS +VVGQLK EL+ T K FK+VLQQRS NLK
Sbjct:   48 VSTLGEFHSAASSIAKSIHKVSQKLEHLTKLVQQRGLFNDPVAEINSLVHVIKQEMQDLNTELDASQTYVNRRKQEMGDRNQAANHSVNVVGQLKMELINTAKTFKNVLQQRSNNLK 164          
BLAST of mRNA_P-wetherbeei_contig5570.2.1 vs. uniprot
Match: A0A7S2EHX4_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EHX4_TRICV)

HSP 1 Score: 102 bits (253), Expect = 3.460e-25
Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = 1
Query:   55 FHAASADIARGIHVTSQQLSQLTKLVQRRGLFNDPADDINTLVHSIKEGIQGLNGQLDSTQAYVEHQRRKLGQ--QPANHSAHVVGQLKTELMETTKAFKDVLQQRSLNLKVS 387
            FHAA++DI+R I  TS  LS+LT LV+RR LF D  + +N LV  IK  I+GLNG+LD     + HQ+R+LG+  Q    ++++VGQL+ E    T  FK+VLQQRS NLKV+
Sbjct:    3 FHAAASDISRDIAATSALLSELTHLVRRRTLFVDDTERVNWLVLRIKSNIEGLNGRLDEAGDVIAHQKRRLGRNSQAGQEASNLVGQLREEFARATTGFKNVLQQRSDNLKVA 115          
BLAST of mRNA_P-wetherbeei_contig5570.2.1 vs. uniprot
Match: A0A7S3M790_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M790_9STRA)

HSP 1 Score: 102 bits (254), Expect = 1.950e-23
Identity = 49/112 (43.75%), Postives = 78/112 (69.64%), Query Frame = 1
Query:   55 FHAASADIARGIHVTSQQLSQLTKLVQRRGLFNDPADDINTLVHSIKEGIQGLNGQLDSTQAYVEHQRRKLGQ---QPANHSAHVVGQLKTELMETTKAFKDVLQQRSLNLK 381
            F+ A++++A+G+H TS  L++LT LV+R+GLF+DP D+IN+L+  IK+ +  LN + DS Q Y++ ++   G+   Q +NH+  VV  LKT+LM  TK FK +L+ RS  +K
Sbjct:   35 FNEAASEVAKGVHKTSALLTKLTNLVRRQGLFDDPTDEINSLIFRIKQDLDDLNAKCDSAQQYIDSKKSMFGESKDQSSNHNKQVVNHLKTDLMHATKGFKTILEVRSSKMK 146          
BLAST of mRNA_P-wetherbeei_contig5570.2.1 vs. uniprot
Match: A0A482S9F5_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S9F5_9ARCH)

HSP 1 Score: 95.1 bits (235), Expect = 5.200e-22
Identity = 52/113 (46.02%), Postives = 74/113 (65.49%), Query Frame = 1
Query:   52 EFHAASADIARGIHVTSQQLSQLTKLVQRRGLFNDPADDINTLVHSIKEGIQGLNGQLDSTQAYVEHQR---RKLGQQPANHSAHVVGQLKTELMETTKAFKDVLQQRSLNLK 381
            EF+ + +DIARGIH TS  L +L+ LV+++GLF+DP ++IN+L+H IK+ +  LN + D+ Q  V+ Q+        Q   H + VV  LKTELM TTK FK VL+ RS  +K
Sbjct:   37 EFNESVSDIARGIHRTSSLLIKLSNLVKKQGLFDDPTEEINSLIHHIKQDLDDLNSRCDTAQNAVDGQKGFFTSEATQSTQHHSKVVSGLKTELMTTTKDFKSVLELRSTKMK 149          
BLAST of mRNA_P-wetherbeei_contig5570.2.1 vs. uniprot
Match: A0A0P1A9G2_PLAHL (Syntaxin-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9G2_PLAHL)

HSP 1 Score: 95.1 bits (235), Expect = 3.510e-21
Identity = 48/116 (41.38%), Postives = 79/116 (68.10%), Query Frame = 1
Query:   52 EFHAASADIARGIHVTSQQLSQLTKLVQRRGLFNDPADDINTLVHSIKEGIQGLNGQLDSTQAYVEHQRRKL-GQQPANHSAHVVGQLKTELMETTKAFKDVLQQRSLNLKVSNAK 396
            +F+AA++DI++ ++  S++L QLT+LV++  +FNDP D IN L   +K+ I  +N QLD+ Q Y++ +R+    +Q A HS  VV  +K+ LM TTK FKD+L+ R  N+K+  ++
Sbjct:   38 QFNAAASDISKEVYQASKRLQQLTQLVRQNNMFNDPTDAINELAALVKKDITDINMQLDNLQEYIDSKRQSATSRQAARHSDAVVSLMKSNLMATTKGFKDILEVRQENMKLQQSR 153          
BLAST of mRNA_P-wetherbeei_contig5570.2.1 vs. uniprot
Match: A0A5D6Y1T5_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1T5_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.220e-20
Identity = 48/112 (42.86%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   52 EFHAASADIARGIHVTSQQLSQLTKLVQRRGLFNDPADDINTLVHSIKEGIQGLNGQLDSTQAYVEHQRRKLG-QQPANHSAHVVGQLKTELMETTKAFKDVLQQRSLNLKV 384
            EF+AA++DI++ ++  S++L QLT+LV++  +FNDP + IN L   +K+ I  +N QLD+ Q Y+  +R   G +Q A HS  +V  +K+ LM TTK FKD+L+ R  N+K+
Sbjct:   41 EFNAAASDISKEVYQASKRLQQLTQLVRQNNMFNDPTETINELAALVKKDITDINAQLDNLQEYINSKRSANGSRQAATHSDAIVSLMKSNLMTTTKGFKDILEVRQENMKL 152          
BLAST of mRNA_P-wetherbeei_contig5570.2.1 vs. uniprot
Match: K3X7D7_GLOUD (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7D7_GLOUD)

HSP 1 Score: 94.4 bits (233), Expect = 1.550e-20
Identity = 48/112 (42.86%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   52 EFHAASADIARGIHVTSQQLSQLTKLVQRRGLFNDPADDINTLVHSIKEGIQGLNGQLDSTQAYVEHQRRKLG-QQPANHSAHVVGQLKTELMETTKAFKDVLQQRSLNLKV 384
            +F+AA++DI++ ++  SQ+L QLT+LV++  +FNDP + IN L   +K+ I  +N QLD+ Q Y+  +R   G +Q A HS  +V  +K+ LM TTK FKD+L+ R  N+K+
Sbjct:   41 QFNAAASDISKEVYQASQRLQQLTQLVRQNNMFNDPTEAINELAALVKKDITDINAQLDNLQEYINSKRSANGSKQAATHSDAIVSLMKSNLMVTTKGFKDILEVRQENMKL 152          
BLAST of mRNA_P-wetherbeei_contig5570.2.1 vs. uniprot
Match: A0A3M6VV92_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VV92_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.970e-19
Identity = 45/116 (38.79%), Postives = 78/116 (67.24%), Query Frame = 1
Query:   52 EFHAASADIARGIHVTSQQLSQLTKLVQRRGLFNDPADDINTLVHSIKEGIQGLNGQLDSTQAYVEHQRRKL-GQQPANHSAHVVGQLKTELMETTKAFKDVLQQRSLNLKVSNAK 396
            +F+AA++DI++ ++  S++L QLT+LV++  +FNDP + IN L   +K+ I  +N QLD+ Q Y+  +R+    +Q A HS  +V  +K+ LM TT+ FKD+L+ R  N+K+  ++
Sbjct:   38 QFNAAASDISKEVYQASKRLQQLTRLVRQNNMFNDPTEAINELAALVKKDITDINMQLDNLQEYMNSKRQSAPSRQAAKHSDAIVSLMKSNLMATTRGFKDILEVRQENMKLQQSR 153          
BLAST of mRNA_P-wetherbeei_contig5570.2.1 vs. uniprot
Match: A0A421GD73_9STRA (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GD73_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.200e-19
Identity = 45/116 (38.79%), Postives = 78/116 (67.24%), Query Frame = 1
Query:   52 EFHAASADIARGIHVTSQQLSQLTKLVQRRGLFNDPADDINTLVHSIKEGIQGLNGQLDSTQAYVEHQRRKL-GQQPANHSAHVVGQLKTELMETTKAFKDVLQQRSLNLKVSNAK 396
            +F+AA++DI++ ++  S++L QLT+LV++  +FNDP + IN L   +K+ I  +N QLD+ Q Y+  +R+    +Q A HS  +V  +K+ LM TT+ FKD+L+ R  N+K+  ++
Sbjct:   38 QFNAAASDISKEVYQASKRLQQLTQLVRQNNMFNDPTEAINELAALVKKDITDINMQLDNLQEYINSKRQSAPSRQAAKHSDAIVSLMKSNLMVTTRGFKDILEVRQENMKLQQSR 153          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5570.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZBM9_9STRA7.490e-3761.67Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
D8LIS8_ECTSI3.670e-3458.12Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A7S2EHX4_TRICV3.460e-2550.44Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S3M790_9STRA1.950e-2343.75Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482S9F5_9ARCH5.200e-2246.02Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A0P1A9G2_PLAHL3.510e-2141.38Syntaxin-like protein n=1 Tax=Plasmopara halstedii... [more]
A0A5D6Y1T5_9STRA1.220e-2042.86t-SNARE coiled-coil homology domain-containing pro... [more]
K3X7D7_GLOUD1.550e-2042.86t-SNARE coiled-coil homology domain-containing pro... [more]
A0A3M6VV92_9STRA2.970e-1938.79t-SNARE coiled-coil homology domain-containing pro... [more]
A0A421GD73_9STRA3.200e-1938.79t-SNARE coiled-coil homology domain-containing pro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5570contigP-wetherbeei_contig5570:2613..3749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LIS8
Preferred nameSTX5
PFAMsSNARE,Syntaxin-5_N
Model size402
Max annot lvl2759|Eukaryota
KEGG koko:K08490
KEGG Pathwayko04130,map04130
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000149,GO:0000278,GO:0000280,GO:0000281,GO:0000902,GO:0000910,GO:0001505,GO:0002164,GO:0002376,GO:0002520,GO:0002790,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0005886,GO:0006810,GO:0006836,GO:0006873,GO:0006875,GO:0006878,GO:0006886,GO:0006887,GO:0006888,GO:0006891,GO:0006900,GO:0006901,GO:0006903,GO:0006904,GO:0006906,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0008104,GO:0008150,GO:0008283,GO:0008361,GO:0009306,GO:0009653,GO:0009791,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010256,GO:0010604,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0016197,GO:0016482,GO:0017156,GO:0019222,GO:0019725,GO:0019953,GO:0022402,GO:0022406,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0023061,GO:0030003,GO:0030097,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031201,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0033116,GO:0033206,GO:0034498,GO:0034613,GO:0035166,GO:0035167,GO:0042147,GO:0042175,GO:0042176,GO:0042592,GO:0042802,GO:0042803,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045055,GO:0045184,GO:0045732,GO:0045786,GO:0045930,GO:0046903,GO:0046907,GO:0046916,GO:0046983,GO:0047485,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048278,GO:0048280,GO:0048284,GO:0048285,GO:0048308,GO:0048313,GO:0048489,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048534,GO:0048542,GO:0048569,GO:0048609,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0051128,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051301,GO:0051321,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051726,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0060255,GO:0060305,GO:0061024,GO:0061025,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090114,GO:0090166,GO:0090174,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098771,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140013,GO:0140029,GO:0140056,GO:1903008,GO:1903046,GO:1903047,GO:1903358
Exons3
Evalue6.02e-35
EggNOG OGsKOG0812@1|root,KOG0812@2759|Eukaryota
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-03_001420.1
Descriptionvesicle docking
Cds size402
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186829.2367675-CDS-P-wetherbeei_contig5570:2612..27391683186829.2367675-CDS-P-wetherbeei_contig5570:2612..2739Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5570 2613..2739 +
1683186829.2492867-CDS-P-wetherbeei_contig5570:2983..30541683186829.2492867-CDS-P-wetherbeei_contig5570:2983..3054Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5570 2984..3054 +
1683186829.26504-CDS-P-wetherbeei_contig5570:3545..37491683186829.26504-CDS-P-wetherbeei_contig5570:3545..3749Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5570 3546..3749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5570.2.1prot_P-wetherbeei_contig5570.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5570 2613..3749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5570.2.1

>prot_P-wetherbeei_contig5570.2.1 ID=prot_P-wetherbeei_contig5570.2.1|Name=mRNA_P-wetherbeei_contig5570.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
GGPALSASAPASVASLHEFHAASADIARGIHVTSQQLSQLTKLVQRRGLF
NDPADDINTLVHSIKEGIQGLNGQLDSTQAYVEHQRRKLGQQPANHSAHV
VGQLKTELMETTKAFKDVLQQRSLNLKVSNAKY*
back to top

mRNA from alignment at P-wetherbeei_contig5570:2613..3749+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5570.2.1 ID=mRNA_P-wetherbeei_contig5570.2.1|Name=mRNA_P-wetherbeei_contig5570.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1137bp|location=Sequence derived from alignment at P-wetherbeei_contig5570:2613..3749+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGGCCGGCGCTGTCGGCAAGTGCGCCTGCTTCTGTAGCGTCTTTGCA CGAGTTCCACGCAGCTTCAGCAGATATAGCCCGAGGCATTCATGTCACGT CGCAGCAACTATCCCAGCTGACCAAACGTGAGCGTAAAGAACTGGCTTTA GGGAAATTAAGTCGCTTTGTTGTTTCCATCAAGCTGCCCAGCGGTACTAC GGTCTGGCAAACCGGGTGGCGTTCCGTACAAGGACGCGGCGTTTTCAGGG CAACGACCTGAGCCATGAACTTTTCTGAAAAGGGCTGGGATCAGAAATGG AAGGGAACACGGTGGCCTCCCATCTTTGTGCTGCGCTTTCTCTACGATTG CCCTGTCTTGCTGGACCGCAGTCGTACAACGAAGAGGATTGTTCAATGAT CCCGCCGATGACATCAACACCTTGGTGCACAGCATCAAAGAGGTTGGTGC TTCCTCGCTCCGTTAATGTTTGTTCGATGTTTGCTTGCACAAATTACTGT TCTGGACGCATGAAAAGTCGCGGATTTTGTGTCATTTTTAGGATTTGCTT ATCTGTAAAGAACCCTGTGTGTCGAAGAGCCGACTCATCTTTATTGCCAT CTTTGCGCTTCTGCGGCGGCGGCAACATGTGACCGACGGGCGGCCGCTTT GGTGGTGTGCAACTTCGATGACTCTTTACCCACAACAATGGCCTTGTGTT TGCTGGTGGCGGCAACGACGGCTTCTGCGGAAACGGATGACTGCGGCTGC TTGGATCTTCCATTGATGACTTGATGATGATATCGGTGATGGCTTCGGCG GCGATGGCGGATGGTGGCAACGATGACGGCGACGGCGATCTCGGCGGCGG CGGCGGTCGCGGCGATGGCTGCGGCGGTGACGGCTGGCGGCTGGCGGCTG GCGGCTGGCGGCTGGCGGTTGACGCATACACAGGGCATCCAAGGACTAAA TGGGCAGCTGGACTCGACGCAGGCGTATGTAGAGCACCAGCGGCGCAAGC TGGGGCAGCAGCCGGCTAACCACTCGGCGCATGTGGTGGGGCAGCTCAAG ACGGAGCTCATGGAGACCACCAAAGCCTTCAAGGACGTCTTGCAGCAGAG GAGCTTAAACCTCAAGGTAAGTAACGCAAAATATTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5570:2613..3749+

>mRNA_P-wetherbeei_contig5570.2.1 ID=mRNA_P-wetherbeei_contig5570.2.1|Name=mRNA_P-wetherbeei_contig5570.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig5570:2613..3749+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGGGCCGGCGCTGTCGGCAAGTGCGCCTGCTTCTGTAGCGTCTTTGCA
CGAGTTCCACGCAGCTTCAGCAGATATAGCCCGAGGCATTCATGTCACGT
CGCAGCAACTATCCCAGCTGACCAAACTCGTACAACGAAGAGGATTGTTC
AATGATCCCGCCGATGACATCAACACCTTGGTGCACAGCATCAAAGAGGG
CATCCAAGGACTAAATGGGCAGCTGGACTCGACGCAGGCGTATGTAGAGC
ACCAGCGGCGCAAGCTGGGGCAGCAGCCGGCTAACCACTCGGCGCATGTG
GTGGGGCAGCTCAAGACGGAGCTCATGGAGACCACCAAAGCCTTCAAGGA
CGTCTTGCAGCAGAGGAGCTTAAACCTCAAGGTAAGTAACGCAAAATATT
GA
back to top