mRNA_P-wetherbeei_contig5570.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5570.1.1
Unique NamemRNA_P-wetherbeei_contig5570.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5570.1.1 vs. uniprot
Match: A0A835YP71_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP71_9STRA)

HSP 1 Score: 202 bits (515), Expect = 1.740e-58
Identity = 94/151 (62.25%), Postives = 114/151 (75.50%), Query Frame = 1
Query:    7 RLTILYGSQTGNAQSIAEGVHSECASRGIESVLLPLNEWKKLKPPLESQKVAVIIVSTTGNGDPPENCDRFWRHLKRRTHPKDVLEGVHFAMLGLGDSNYDKFCHTGKSMNTRLRELGAEAFYPLVCADEALG-LEDFVEPWLAGLWPALD 456
            RL +LYGSQTGNA+SIAE +H E   +  ESVLLPLN++K L P LE   VAVII STTGNGDPPEN DRFWR +K+RT+ K +   + + +LGLGD+NYDKFC  G+ +N RL ELGA AFYP+ CADE  G +E+ +EPWL GLW ALD
Sbjct:    5 RLAVLYGSQTGNAKSIAETLHDEALKKDYESVLLPLNKYKNLTPSLEEGTVAVIICSTTGNGDPPENSDRFWRFIKKRTNSKTLFSNLKYTVLGLGDTNYDKFCFVGQGINRRLLELGASAFYPMACADEGTGTMEETIEPWLEGLWSALD 155          
BLAST of mRNA_P-wetherbeei_contig5570.1.1 vs. uniprot
Match: A0A2P4XHY5_9STRA (NADPH-dependent diflavin oxidoreductase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XHY5_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.260e-55
Identity = 80/149 (53.69%), Postives = 110/149 (73.83%), Query Frame = 1
Query:   10 LTILYGSQTGNAQSIAEGVHSECASRGIESVLLPLNEWKKLKPPLESQKVAVIIVSTTGNGDPPENCDRFWRHLKRRTHPKDVLEGVHFAMLGLGDSNYDKFCHTGKSMNTRLRELGAEAFYPLVCADEALGLEDFVEPWLAGLWPALD 456
            +++ YGSQTG A+SIA+ ++ E   + +++ L PLNE++K K         +I+ STTGNGDPP+NC +FWR++KRRT P+D+L  + + +LGLGD+NYDKFC  GKS+  R+RELGA++FY    ADEA+GLED VEPWL GLW A D
Sbjct:    5 VSVFYGSQTGCAESIAQRIYDEALEKQLDAELHPLNEFQKSKVETRDGHFVIIVCSTTGNGDPPDNCGKFWRYVKRRTQPEDMLAKLRYTVLGLGDTNYDKFCFMGKSIEKRMRELGAQSFYEFGAADEAMGLEDSVEPWLNGLWDAFD 153          
BLAST of mRNA_P-wetherbeei_contig5570.1.1 vs. uniprot
Match: A0A329RD62_9STRA (Methionine synthase reductase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RD62_9STRA)

HSP 1 Score: 184 bits (467), Expect = 5.510e-52
Identity = 81/149 (54.36%), Postives = 110/149 (73.83%), Query Frame = 1
Query:   10 LTILYGSQTGNAQSIAEGVHSECASRGIESVLLPLNEWKKLKPPLESQKVAVIIVSTTGNGDPPENCDRFWRHLKRRTHPKDVLEGVHFAMLGLGDSNYDKFCHTGKSMNTRLRELGAEAFYPLVCADEALGLEDFVEPWLAGLWPALD 456
            +++ YGSQTG A+SIA+ ++ E  ++ +++ L PLNE++K K         VI+ STTGNGDPP+NC +FWR++KRRT P D+L  + + +LGLGD+NYDKFC  GKS+  R+RELGA++FY    ADEA+GLED VEPWL GLW A D
Sbjct:    6 VSVFYGSQTGCAESIAQRIYDEALAKQLDAELHPLNEFQKSKVETRDGHFVVIVCSTTGNGDPPDNCGKFWRYVKRRTQPDDMLAKLRYTVLGLGDTNYDKFCFMGKSIEKRMRELGAQSFYEFAAADEAMGLEDSVEPWLNGLWEAFD 154          
BLAST of mRNA_P-wetherbeei_contig5570.1.1 vs. uniprot
Match: W2PNB7_PHYPN (Flavodoxin-like domain-containing protein n=4 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PNB7_PHYPN)

HSP 1 Score: 179 bits (455), Expect = 1.350e-51
Identity = 81/149 (54.36%), Postives = 110/149 (73.83%), Query Frame = 1
Query:   10 LTILYGSQTGNAQSIAEGVHSECASRGIESVLLPLNEWKKLKPPLESQKVAVIIVSTTGNGDPPENCDRFWRHLKRRTHPKDVLEGVHFAMLGLGDSNYDKFCHTGKSMNTRLRELGAEAFYPLVCADEALGLEDFVEPWLAGLWPALD 456
            +++ YGSQTG A+SIA+ ++ E   + +++ L PLNE++K K         VI+ STTGNGDPP+NC +FWR++KRRT P+D+L  + + +LGLGD+NYDKFC  GKS+  R+RELGA++FY    ADEA+GLED VEPWL GLW A D
Sbjct:   27 VSVFYGSQTGCAESIAQRIYDEALEKQLDAELHPLNEFQKSKVETRDGHFVVIVCSTTGNGDPPDNCGKFWRYVKRRTQPEDMLAKLRYTVLGLGDTNYDKFCFMGKSIEKRMRELGAQSFYEF--ADEAMGLEDSVEPWLNGLWEAFD 173          
BLAST of mRNA_P-wetherbeei_contig5570.1.1 vs. uniprot
Match: W2PP06_PHYPN (Uncharacterized protein n=41 Tax=Phytophthora TaxID=4783 RepID=W2PP06_PHYPN)

HSP 1 Score: 183 bits (465), Expect = 1.350e-51
Identity = 81/149 (54.36%), Postives = 110/149 (73.83%), Query Frame = 1
Query:   10 LTILYGSQTGNAQSIAEGVHSECASRGIESVLLPLNEWKKLKPPLESQKVAVIIVSTTGNGDPPENCDRFWRHLKRRTHPKDVLEGVHFAMLGLGDSNYDKFCHTGKSMNTRLRELGAEAFYPLVCADEALGLEDFVEPWLAGLWPALD 456
            +++ YGSQTG A+SIA+ ++ E   + +++ L PLNE++K K         VI+ STTGNGDPP+NC +FWR++KRRT P+D+L  + + +LGLGD+NYDKFC  GKS+  R+RELGA++FY    ADEA+GLED VEPWL GLW A D
Sbjct:   27 VSVFYGSQTGCAESIAQRIYDEALEKQLDAELHPLNEFQKSKVETRDGHFVVIVCSTTGNGDPPDNCGKFWRYVKRRTQPEDMLAKLRYTVLGLGDTNYDKFCFMGKSIEKRMRELGAQSFYEFGAADEAMGLEDSVEPWLNGLWEAFD 175          
BLAST of mRNA_P-wetherbeei_contig5570.1.1 vs. uniprot
Match: A0A6A3NNG0_9STRA (Methionine synthase reductase n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3NNG0_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.480e-51
Identity = 81/149 (54.36%), Postives = 109/149 (73.15%), Query Frame = 1
Query:   10 LTILYGSQTGNAQSIAEGVHSECASRGIESVLLPLNEWKKLKPPLESQKVAVIIVSTTGNGDPPENCDRFWRHLKRRTHPKDVLEGVHFAMLGLGDSNYDKFCHTGKSMNTRLRELGAEAFYPLVCADEALGLEDFVEPWLAGLWPALD 456
            +++ +GSQTG A+SIA+ ++ E   R +++ L PLNE++K K         VI+ STTGNGDPP+NC +FWR++KRRT P D+L  + + +LGLGD+NYDKFC  GKS+  R+RELGA++FY    ADEA+GLED VEPWL GLW A D
Sbjct:    6 ISVFFGSQTGCAESIAQRIYDEALERHLDAELHPLNEFQKSKVETRDGHFVVIVCSTTGNGDPPDNCGKFWRYVKRRTQPSDMLAKLRYTVLGLGDTNYDKFCFMGKSIEKRMRELGAQSFYEFGAADEAMGLEDSVEPWLNGLWAAFD 154          
BLAST of mRNA_P-wetherbeei_contig5570.1.1 vs. uniprot
Match: A0A3F2RUE5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RUE5_9STRA)

HSP 1 Score: 182 bits (461), Expect = 4.270e-51
Identity = 81/149 (54.36%), Postives = 109/149 (73.15%), Query Frame = 1
Query:   10 LTILYGSQTGNAQSIAEGVHSECASRGIESVLLPLNEWKKLKPPLESQKVAVIIVSTTGNGDPPENCDRFWRHLKRRTHPKDVLEGVHFAMLGLGDSNYDKFCHTGKSMNTRLRELGAEAFYPLVCADEALGLEDFVEPWLAGLWPALD 456
            +++ YGSQTG A+SIA+ ++ E   + +++ L PLNE++KLK         VI+ STTGNGDPP+NC +FWR++KRRT P D+L  + + +LGLGD+NYDKFC  GK +  R+RELGA++FY    ADEA+GLED VEPWL GLW A D
Sbjct:    5 VSVFYGSQTGCAESIAQRIYDEALEKQLDAELHPLNEFQKLKVQDRDGHFVVIVCSTTGNGDPPDNCSKFWRYVKRRTQPDDMLAKLKYTVLGLGDTNYDKFCFVGKGIERRMRELGAQSFYDFGVADEAMGLEDSVEPWLEGLWIAFD 153          
BLAST of mRNA_P-wetherbeei_contig5570.1.1 vs. uniprot
Match: H3HCW1_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCW1_PHYRM)

HSP 1 Score: 178 bits (452), Expect = 2.680e-50
Identity = 78/149 (52.35%), Postives = 107/149 (71.81%), Query Frame = 1
Query:   10 LTILYGSQTGNAQSIAEGVHSECASRGIESVLLPLNEWKKLKPPLESQKVAVIIVSTTGNGDPPENCDRFWRHLKRRTHPKDVLEGVHFAMLGLGDSNYDKFCHTGKSMNTRLRELGAEAFYPLVCADEALGLEDFVEPWLAGLWPALD 456
            +++ YGSQTG A+SIA+ ++ E   + +++ L PLNE+++ K         VI+ STTGNGDPP+NC +FWR++KRRT P D+L  + + +LGLGD+NYDKFC  GK +  R+RELGA++FY    ADEA+GLED VEPWL  LW A D
Sbjct:    5 VSVFYGSQTGCAESIAQRIYDEALEKQLDAELHPLNEFQRSKVETRDGHFVVIVCSTTGNGDPPDNCGKFWRYVKRRTQPDDMLAKLRYTVLGLGDTNYDKFCFMGKGIERRMRELGAQSFYEFCAADEAMGLEDSVEPWLNALWAAFD 153          
BLAST of mRNA_P-wetherbeei_contig5570.1.1 vs. uniprot
Match: A0A8K1FQ27_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQ27_PYTOL)

HSP 1 Score: 179 bits (454), Expect = 4.910e-50
Identity = 83/150 (55.33%), Postives = 112/150 (74.67%), Query Frame = 1
Query:   10 LTILYGSQTGNAQSIAEGVHSECASRGIESVLLPLNEWKK---LKPPLESQKVAVIIVSTTGNGDPPENCDRFWRHLKRRTHPKDVLEGVHFAMLGLGDSNYDKFCHTGKSMNTRLRELGAEAFYPLVCADEALGLEDFVEPWLAGLWPA 450
            L + YGSQTG A+SIA+ ++ E   + IE+VL PLN+++    L+ P       +++ STTGNGDPP+N  +FWR++KRRT PKD+LE + +AMLGLGD+NYDKFC+ GKS++ R+REL A+ FY +  ADEA+GLED VEPWL GLW A
Sbjct:    3 LAVFYGSQTGCAESIAKRIYDEALEKEIEAVLHPLNDFQSMDLLEHPTPQH--VILVCSTTGNGDPPDNAAKFWRYIKRRTQPKDMLEKITYAMLGLGDTNYDKFCYMGKSIDKRMRELSAQPFYDMCAADEAMGLEDQVEPWLDGLWEA 150          
BLAST of mRNA_P-wetherbeei_contig5570.1.1 vs. uniprot
Match: D0P304_PHYIT (NADPH-dependent diflavin oxidoreductase, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P304_PHYIT)

HSP 1 Score: 173 bits (438), Expect = 6.480e-50
Identity = 78/149 (52.35%), Postives = 106/149 (71.14%), Query Frame = 1
Query:   10 LTILYGSQTGNAQSIAEGVHSECASRGIESVLLPLNEWKKLKPPLESQKVAVIIVSTTGNGDPPENCDRFWRHLKRRTHPKDVLEGVHFAMLGLGDSNYDKFCHTGKSMNTRLRELGAEAFYPLVCADEALGLEDFVEPWLAGLWPALD 456
            +++ YGSQTG A+SIA+ ++ E   + +++ L PLN+    K         VI+ STTGNGDPP+NC +FWR++KRRT P D+L  + + +LGLGD+NYDKFC  GKS+  R+RELGA++FY    ADEA+GLE+ VEPWL GLW A D
Sbjct:    6 VSVFYGSQTGCAESIAQRIYDEAMEKQLDAELHPLND----KVETRDGHFVVIVCSTTGNGDPPDNCGKFWRYVKRRTQPDDMLAKLRYTVLGLGDTNYDKFCFMGKSIEKRMRELGAQSFYEFAAADEAMGLEESVEPWLNGLWEAFD 150          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5570.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YP71_9STRA1.740e-5862.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2P4XHY5_9STRA1.260e-5553.69NADPH-dependent diflavin oxidoreductase (Fragment)... [more]
A0A329RD62_9STRA5.510e-5254.36Methionine synthase reductase n=2 Tax=Phytophthora... [more]
W2PNB7_PHYPN1.350e-5154.36Flavodoxin-like domain-containing protein n=4 Tax=... [more]
W2PP06_PHYPN1.350e-5154.36Uncharacterized protein n=41 Tax=Phytophthora TaxI... [more]
A0A6A3NNG0_9STRA1.480e-5154.36Methionine synthase reductase n=3 Tax=Phytophthora... [more]
A0A3F2RUE5_9STRA4.270e-5154.36Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
H3HCW1_PHYRM2.680e-5052.35Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A8K1FQ27_PYTOL4.910e-5055.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0P304_PHYIT6.480e-5052.35NADPH-dependent diflavin oxidoreductase, putative ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5570contigP-wetherbeei_contig5570:867..1937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4792.ETI36887
PFAMsFAD_binding_1,Flavodoxin_1,NAD_binding_1
Model size456
Max annot lvl4776|Peronosporales
KEGG koko:K00597
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.22e-52
EggNOG OGsCOG0369@1|root,KOG1158@2759|Eukaryota,3Q783@4776|Peronosporales
EC1.16.1.8
DescriptionFAD binding domain
Cds size456
COG categoryC
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186829.160083-CDS-P-wetherbeei_contig5570:866..10051683186829.160083-CDS-P-wetherbeei_contig5570:866..1005Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5570 867..1005 -
1683186829.1763241-CDS-P-wetherbeei_contig5570:1308..14781683186829.1763241-CDS-P-wetherbeei_contig5570:1308..1478Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5570 1309..1478 -
1683186829.1890829-CDS-P-wetherbeei_contig5570:1659..17461683186829.1890829-CDS-P-wetherbeei_contig5570:1659..1746Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5570 1660..1746 -
1683186829.2060032-CDS-P-wetherbeei_contig5570:1877..19371683186829.2060032-CDS-P-wetherbeei_contig5570:1877..1937Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5570 1878..1937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5570.1.1prot_P-wetherbeei_contig5570.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5570 867..1937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5570.1.1

>prot_P-wetherbeei_contig5570.1.1 ID=prot_P-wetherbeei_contig5570.1.1|Name=mRNA_P-wetherbeei_contig5570.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=152bp
SSRLTILYGSQTGNAQSIAEGVHSECASRGIESVLLPLNEWKKLKPPLES
QKVAVIIVSTTGNGDPPENCDRFWRHLKRRTHPKDVLEGVHFAMLGLGDS
NYDKFCHTGKSMNTRLRELGAEAFYPLVCADEALGLEDFVEPWLAGLWPA
LD
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mRNA from alignment at P-wetherbeei_contig5570:867..1937-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5570.1.1 ID=mRNA_P-wetherbeei_contig5570.1.1|Name=mRNA_P-wetherbeei_contig5570.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1071bp|location=Sequence derived from alignment at P-wetherbeei_contig5570:867..1937- (Phaeothamnion wetherbeei SAG_119_79)
TCATCCAGGCTTACGATTCTTTACGGCTCACAAACCGGCAATGCACAGTC GATTGCAGAGGTGAGGCGGGGGGAAGGGCAGCTCTGCCAATAAATGACCC CTTCACAATCCCAAACGTGCCGACTTCTCGTTTCTGGCTCGCGAGAACTT ATTGCTCGACGCTGCTCTCTGTCGAACCTTTTGCGCTACAGGGAGTGCAC AGCGAGTGCGCTTCGCGTGGTATCGAAAGCGTCCTCCTGCCGCTGAACGA ATGGAAGAAGCTCAAGCCACCGCTAGAGGTGCGTTTTGGAAGAAGTTTGA GGATGTTCTTGTTCGGTGTGTGCTTGAGCCTTTTTTGCCTGCCGTATGTT TGACGCGGTCTCTCATCCGTGGGTCTCAAAGCTAGGTCCCTCTTCGTCGT CTTCTTCTTCTTCTTCTTCTTCCCTTTTTTTGTACCACTGTCGCGTTATT TCTTTGCAGTCGCAAAAGGTGGCTGTGATTATTGTGTCGACGACGGGGAA TGGCGACCCGCCAGAGAACTGTGATCGGTTCTGGCGGCACCTCAAACGCC GCACCCACCCGAAAGACGTGCTGGAGGGGGTGCACTTTGCCATGCTTGGA CTCGGCGACAGCAACTACGACAAGTTCTGGTGCGTCTGTGAATAGCGCTG GATGGCTTTCTTCGATAGTCCATGCTTCACGAATACCTCTTCCCTCGATC AACTTGTGATTTTAGCAAACGACATGCACTTCTGGCGAATTGGCATTGTT TTTATGAAGTTACGCTTTAAAGGGGCGAGGTGTAATGCTCGGTCAATCTA GGACATAGGGACCTCTACCCTATTATGAAAGACTTCTTGTGTGGTGTTTG TGAATAACCAACCACCTTCTTGCCCTGCCCTGACCTTTTTTGCCGCCTTA TAAATCAATCTTACGGCGTTCTCCTTATTCAGCCACACAGGCAAGTCGAT GAACACGCGTTTGCGAGAGCTCGGCGCCGAAGCCTTCTACCCGCTCGTCT GCGCCGACGAGGCGTTGGGTCTCGAGGACTTTGTCGAGCCGTGGCTCGCG GGACTCTGGCCGGCGCTTGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5570:867..1937-

>mRNA_P-wetherbeei_contig5570.1.1 ID=mRNA_P-wetherbeei_contig5570.1.1|Name=mRNA_P-wetherbeei_contig5570.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=456bp|location=Sequence derived from alignment at P-wetherbeei_contig5570:867..1937- (Phaeothamnion wetherbeei SAG_119_79)
TCATCCAGGCTTACGATTCTTTACGGCTCACAAACCGGCAATGCACAGTC
GATTGCAGAGGGAGTGCACAGCGAGTGCGCTTCGCGTGGTATCGAAAGCG
TCCTCCTGCCGCTGAACGAATGGAAGAAGCTCAAGCCACCGCTAGAGTCG
CAAAAGGTGGCTGTGATTATTGTGTCGACGACGGGGAATGGCGACCCGCC
AGAGAACTGTGATCGGTTCTGGCGGCACCTCAAACGCCGCACCCACCCGA
AAGACGTGCTGGAGGGGGTGCACTTTGCCATGCTTGGACTCGGCGACAGC
AACTACGACAAGTTCTGCCACACAGGCAAGTCGATGAACACGCGTTTGCG
AGAGCTCGGCGCCGAAGCCTTCTACCCGCTCGTCTGCGCCGACGAGGCGT
TGGGTCTCGAGGACTTTGTCGAGCCGTGGCTCGCGGGACTCTGGCCGGCG
CTTGAC
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