mRNA_P-wetherbeei_contig55667.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55667.1.1
Unique NamemRNA_P-wetherbeei_contig55667.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55667.1.1 vs. uniprot
Match: UPI001C3E536B (hypothetical protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3E536B)

HSP 1 Score: 191 bits (485), Expect = 4.520e-60
Identity = 103/111 (92.79%), Postives = 109/111 (98.20%), Query Frame = 1
Query:    4 DWSDVLKLALSIFLILTGVGLAYLFVRMANVFGRLGTSVTRVTDEVIPILNKAQTTVDGVNLELTRVDEMMQTAVGATKGAEKTVQTVSSAVTKPVRKLTGLAAGAREAVA 336
            DWSD+LKLALSIFLILTGVGLAYLF+RMA VFGRLGTSVTR+TDEV+PILNKAQTTVDGVNLEL RVDEMM+TAVGATKGAEKTVQTVSSAVTKPVRK+TGLAAGAREAVA
Sbjct:    2 DWSDLLKLALSIFLILTGVGLAYLFLRMAGVFGRLGTSVTRITDEVVPILNKAQTTVDGVNLELMRVDEMMKTAVGATKGAEKTVQTVSSAVTKPVRKITGLAAGAREAVA 112          
BLAST of mRNA_P-wetherbeei_contig55667.1.1 vs. uniprot
Match: UPI001C3D23E7 (hypothetical protein n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3D23E7)

HSP 1 Score: 188 bits (477), Expect = 3.250e-59
Identity = 101/111 (90.99%), Postives = 108/111 (97.30%), Query Frame = 1
Query:    4 DWSDVLKLALSIFLILTGVGLAYLFVRMANVFGRLGTSVTRVTDEVIPILNKAQTTVDGVNLELTRVDEMMQTAVGATKGAEKTVQTVSSAVTKPVRKLTGLAAGAREAVA 336
            DWSD+LKLALSIFLILTGVGLAYLF+RMA VF R+GTSVTR+TDEV+PILNKAQTTVDGVNLEL RVDEMM+TAVGATKGAEKTVQTVSSA+TKPVRKLTGLAAGAREAVA
Sbjct:    2 DWSDLLKLALSIFLILTGVGLAYLFLRMAGVFARVGTSVTRITDEVVPILNKAQTTVDGVNLELMRVDEMMKTAVGATKGAEKTVQTVSSAITKPVRKLTGLAAGAREAVA 112          
BLAST of mRNA_P-wetherbeei_contig55667.1.1 vs. uniprot
Match: A0A419GKJ0_9ACTN (DUF948 domain-containing protein n=1 Tax=Gaiellales bacterium TaxID=2093372 RepID=A0A419GKJ0_9ACTN)

HSP 1 Score: 98.6 bits (244), Expect = 2.310e-24
Identity = 52/110 (47.27%), Postives = 74/110 (67.27%), Query Frame = 1
Query:    4 DWSDVLKLALSIFLILTGVGLAYLFVRMANVFGRLGTSVTRVTDEVIPILNKAQTTVDGVNLELTRVDEMMQTAVGATKGAEKTVQTVSSAVTKPVRKLTGLAAGAREAV 333
            DW+ +L+ +LS FL+LT + LAYL VR+   F R+   + R+ DEVIP+L+K Q T+D VN +L +VD+M+ T V  T   E T + + S VT+PV+K  GL+AG  EAV
Sbjct:    2 DWTAILQASLSFFLVLTALALAYLLVRIGGTFSRINDFLKRLDDEVIPLLSKTQVTLDEVNSQLGKVDDMLGTLVNVTNKVETTSRVMQSVVTRPVKKAAGLSAGVSEAV 111          
BLAST of mRNA_P-wetherbeei_contig55667.1.1 vs. uniprot
Match: A0A7V1FU76_9ACTN (DUF948 domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7V1FU76_9ACTN)

HSP 1 Score: 89.4 bits (220), Expect = 1.020e-20
Identity = 45/110 (40.91%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    4 DWSDVLKLALSIFLILTGVGLAYLFVRMANVFGRLGTSVTRVTDEVIPILNKAQTTVDGVNLELTRVDEMMQTAVGATKGAEKTVQTVSSAVTKPVRKLTGLAAGAREAV 333
            DW+ +L+ ALS FL++T + LAY+ +++   F RL   + R+ +EVIP+L K Q T+D VN  L + D+MM + V  T   E T + V  AVT PV+K+ G ++G  +A+
Sbjct:    2 DWTAILEAALSFFLVVTALALAYMLLKVGGTFSRLNVFLKRLDEEVIPLLTKLQVTLDEVNSNLEKADDMMGSLVDVTDSVESTTRAVQMAVTTPVKKVAGFSSGVSQAI 111          
BLAST of mRNA_P-wetherbeei_contig55667.1.1 vs. uniprot
Match: A0A7X7JF01_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X7JF01_9ACTN)

HSP 1 Score: 84.0 bits (206), Expect = 1.440e-18
Identity = 45/111 (40.54%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 VDWSDVLKLALSIFLILTGVGLAYLFVRMANVFGRLGTSVTRVTDEVIPILNKAQTTVDGVNLELTRVDEMMQTAVGATKGAEKTVQTVSSAVTKPVRKLTGLAAGAREAV 333
            VD  D +++A+ +F +L G GL Y+F+R+A  F      V  V  +++P+LN+ QTT+D +N EL+ V EM Q+A  A    E+T   V+ A+  PV+K  G AAG   AV
Sbjct:    3 VDSGDFMRIAIGVFFLLFGAGLIYMFLRLAGFFSAASVLVQNVDRQIVPVLNRLQTTMDEINAELSTVGEMTQSANTAVGAVEQTTVAVTHAIAGPVKKAAGFAAGVSRAV 113          
BLAST of mRNA_P-wetherbeei_contig55667.1.1 vs. uniprot
Match: A0A7X8YWY7_9ACTN (DUF948 domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X8YWY7_9ACTN)

HSP 1 Score: 83.6 bits (205), Expect = 2.040e-18
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    4 DWSDVLKLALSIFLILTGVGLAYLFVRMANVFGRLGTSVTRVTDEVIPILNKAQTTVDGVNLELTRVDEMMQTAVGATKGAEKTVQTVSSAVTKPVRKLTGLAAGARE 327
            D   ++++A+ +F +L GVG+AY  VR+A VF RL + +      V+P+L + + T+DGVN EL +VDE+  +  G  K AE+    V SAV+KP++K+ G  A   E
Sbjct:    4 DADAIMRIAIGVFFVLFGVGIAYALVRLATVFKRLSSILADANTRVVPLLTRLEGTLDGVNSELGKVDELTGSVAGIVKTAEQATTAVQSAVSKPMKKMAGATAAVNE 111          
BLAST of mRNA_P-wetherbeei_contig55667.1.1 vs. uniprot
Match: A0A7V9PYM9_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9PYM9_9ACTN)

HSP 1 Score: 83.2 bits (204), Expect = 7.800e-18
Identity = 45/108 (41.67%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   10 SDVLKLALSIFLILTGVGLAYLFVRMANVFGRLGTSVTRVTDEVIPILNKAQTTVDGVNLELTRVDEMMQTAVGATKGAEKTVQTVSSAVTKPVRKLTGLAAGAREAV 333
             DVL  AL+ F + +G+GLAY+ VR+   FGRL + +     E++P++ KA  T+D VN EL ++D +  +AV   + A+  V+ VS+A+T PV+K+TGLAA     V
Sbjct:    9 GDVLDYALAAFFVASGLGLAYMLVRLGGTFGRLSSFIQGTERELLPVIEKAGGTIDLVNKELDKLDVVTDSAVSMAESADTAVRAVSTAITTPVKKVTGLAAAVSHGV 116          
BLAST of mRNA_P-wetherbeei_contig55667.1.1 vs. uniprot
Match: A0A1F2X2W8_9ACTN (Uncharacterized protein n=1 Tax=Actinobacteria bacterium RBG_13_63_9 TaxID=1797198 RepID=A0A1F2X2W8_9ACTN)

HSP 1 Score: 80.9 bits (198), Expect = 2.270e-17
Identity = 40/110 (36.36%), Postives = 69/110 (62.73%), Query Frame = 1
Query:    4 DWSDVLKLALSIFLILTGVGLAYLFVRMANVFGRLGTSVTRVTDEVIPILNKAQTTVDGVNLELTRVDEMMQTAVGATKGAEKTVQTVSSAVTKPVRKLTGLAAGAREAV 333
            D   ++++A+ +F +L G G+A+   R+  VF RL + ++     +IP+L + + T+DGVN EL +VD++  +  G  + AE+T   V +AV  P+RK+ GL AG RE++
Sbjct:    4 DAGAIMRVAIGVFFVLFGAGVAFALFRLGAVFKRLTSILSDANTRLIPLLTRVEATLDGVNAELGKVDQITGSVAGIVRAAEQTTTAVHAAVATPIRKIVGLVAGTRESI 113          
BLAST of mRNA_P-wetherbeei_contig55667.1.1 vs. uniprot
Match: A0A7W0PL74_9ACTN (DUF948 domain-containing protein n=4 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0PL74_9ACTN)

HSP 1 Score: 80.1 bits (196), Expect = 1.150e-16
Identity = 44/102 (43.14%), Postives = 68/102 (66.67%), Query Frame = 1
Query:   10 SDVLKLALSIFLILTGVGLAYLFVRMANVFGRLGTSVTRVTDEVIPILNKAQTTVDGVNLELTRVDEMMQTAVGATKGAEKTVQTVSSAVTKPVRKLTGLAA 315
             DVL  AL+ F IL+G+GLAY+ VR+   FGRL + +     +++P++ KA  TVD VN ++ ++D +  +AV     A+  V+ VS+A+T PV+K+TGLAA
Sbjct:    9 GDVLDYALAAFFILSGLGLAYMLVRLGGTFGRLSSFIQGTERDLLPVIVKAGGTVDRVNDQIVKLDVVTDSAVSMADSADTAVRAVSTALTTPVKKVTGLAA 110          
BLAST of mRNA_P-wetherbeei_contig55667.1.1 vs. uniprot
Match: A0A7X7PS59_9ACTN (DUF948 domain-containing protein n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X7PS59_9ACTN)

HSP 1 Score: 78.2 bits (191), Expect = 2.640e-16
Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = 1
Query:    1 VDWSDVLKLALSIFLILTGVGLAYLFVRMANVFGRLGTSVTRVTDEVIPILNKAQTTVDGVNLELTRVDEMMQTAVGATKGAEKTVQTVSSAVTKPVRKLTGLAAGAREAVA 336
            VD  D +++A+ +F +L GVGL  + +R+A VFG   + V  V  E++P+LN+ QTT+D VN EL  V  M ++   A    E T   V+ A+  P++ L+G++AG   AVA
Sbjct:    3 VDAGDFMRIAIGVFFLLFGVGLLVMLLRLAGVFGAASSMVQDVDREIVPVLNRLQTTMDAVNTELGTVCAMTESLSTAAGAVEHTTVAVTRAIGGPIKALSGVSAGVARAVA 114          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55667.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3E536B4.520e-6092.79hypothetical protein n=1 Tax=Miltoncostaea oceani ... [more]
UPI001C3D23E73.250e-5990.99hypothetical protein n=1 Tax=Miltoncostaea marina ... [more]
A0A419GKJ0_9ACTN2.310e-2447.27DUF948 domain-containing protein n=1 Tax=Gaiellale... [more]
A0A7V1FU76_9ACTN1.020e-2040.91DUF948 domain-containing protein n=2 Tax=Bacteria ... [more]
A0A7X7JF01_9ACTN1.440e-1840.54Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A7X8YWY7_9ACTN2.040e-1839.81DUF948 domain-containing protein n=1 Tax=Actinomyc... [more]
A0A7V9PYM9_9ACTN7.800e-1841.67Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A1F2X2W8_9ACTN2.270e-1736.36Uncharacterized protein n=1 Tax=Actinobacteria bac... [more]
A0A7W0PL74_9ACTN1.150e-1643.14DUF948 domain-containing protein n=4 Tax=Actinomyc... [more]
A0A7X7PS59_9ACTN2.640e-1639.29DUF948 domain-containing protein n=2 Tax=Actinobac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55667contigP-wetherbeei_contig55667:3..338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1137269.AZWL01000002_gene6447
PFAMsDUF948
Model size336
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.85e-05
EggNOG OGsCOG4768@1|root,COG4768@2|Bacteria,2II1J@201174|Actinobacteria
DescriptionBacterial protein of unknown function (DUF948)
Cds size336
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186828.6145363-CDS-P-wetherbeei_contig55667:2..3381683186828.6145363-CDS-P-wetherbeei_contig55667:2..338Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55667 3..338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55667.1.1prot_P-wetherbeei_contig55667.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55667 3..338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55667.1.1

>prot_P-wetherbeei_contig55667.1.1 ID=prot_P-wetherbeei_contig55667.1.1|Name=mRNA_P-wetherbeei_contig55667.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
VDWSDVLKLALSIFLILTGVGLAYLFVRMANVFGRLGTSVTRVTDEVIPI
LNKAQTTVDGVNLELTRVDEMMQTAVGATKGAEKTVQTVSSAVTKPVRKL
TGLAAGAREAVA
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mRNA from alignment at P-wetherbeei_contig55667:3..338-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55667.1.1 ID=mRNA_P-wetherbeei_contig55667.1.1|Name=mRNA_P-wetherbeei_contig55667.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig55667:3..338- (Phaeothamnion wetherbeei SAG_119_79)
GTGGATTGGTCCGATGTCCTGAAGCTCGCCCTGTCAATCTTCCTGATCCT CACCGGGGTGGGCCTCGCGTACCTATTCGTGCGCATGGCGAACGTGTTCG GCCGGCTCGGGACCTCGGTGACGCGGGTCACCGACGAGGTGATCCCGATC CTCAACAAGGCCCAGACCACGGTGGACGGGGTCAACCTGGAGCTGACTCG GGTCGACGAGATGATGCAGACCGCCGTCGGCGCCACCAAGGGCGCGGAGA AGACCGTGCAGACGGTCTCGAGCGCGGTCACCAAGCCCGTGCGCAAGCTC ACCGGCCTCGCCGCCGGGGCCCGCGAGGCCGTGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55667:3..338-

>mRNA_P-wetherbeei_contig55667.1.1 ID=mRNA_P-wetherbeei_contig55667.1.1|Name=mRNA_P-wetherbeei_contig55667.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig55667:3..338- (Phaeothamnion wetherbeei SAG_119_79)
GTGGATTGGTCCGATGTCCTGAAGCTCGCCCTGTCAATCTTCCTGATCCT
CACCGGGGTGGGCCTCGCGTACCTATTCGTGCGCATGGCGAACGTGTTCG
GCCGGCTCGGGACCTCGGTGACGCGGGTCACCGACGAGGTGATCCCGATC
CTCAACAAGGCCCAGACCACGGTGGACGGGGTCAACCTGGAGCTGACTCG
GGTCGACGAGATGATGCAGACCGCCGTCGGCGCCACCAAGGGCGCGGAGA
AGACCGTGCAGACGGTCTCGAGCGCGGTCACCAAGCCCGTGCGCAAGCTC
ACCGGCCTCGCCGCCGGGGCCCGCGAGGCCGTGGCC
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