mRNA_P-wetherbeei_contig55656.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55656.1.1
Unique NamemRNA_P-wetherbeei_contig55656.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55656.1.1 vs. uniprot
Match: A0A2P8GG25_9BACT (Uncharacterized protein n=1 Tax=Dyadobacter jiangsuensis TaxID=1591085 RepID=A0A2P8GG25_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 4.020e-7
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 1 
Query:   40 MLKRLIFFASVVLIGVTLVNCDGDK 114
            MLKRLIFFASVVLIGVTLVNCDGDK
Sbjct:    1 MLKRLIFFASVVLIGVTLVNCDGDK 25
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BLAST of mRNA_P-wetherbeei_contig55656.1.1 vs. uniprot
Match: UPI0019A8EF40 (Uncharacterized protein n=2 Tax=Dyadobacter beijingensis TaxID=365489 RepID=UPI0019A8EF40)

HSP 1 Score: 48.5 bits (114), Expect = 1.550e-5
Identity = 22/26 (84.62%), Postives = 23/26 (88.46%), Query Frame = 1 
Query:   40 MLKRLIFFASVVLIGVTLVNCDGDKG 117
            MLKRLIFFA VVL+GV L NCDGDKG
Sbjct:    1 MLKRLIFFAWVVLVGVALANCDGDKG 26
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55656.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2P8GG25_9BACT4.020e-7100.00Uncharacterized protein n=1 Tax=Dyadobacter jiangs... [more]
UPI0019A8EF401.550e-584.62Uncharacterized protein n=2 Tax=Dyadobacter beijin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55656contigP-wetherbeei_contig55656:1..120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size120
Hectar predicted targeting categorysignal anchor
Exons1
Cds size120
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186828.4764843-CDS-P-wetherbeei_contig55656:0..1201683186828.4764843-CDS-P-wetherbeei_contig55656:0..120Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55656 1..120 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55656.1.1prot_P-wetherbeei_contig55656.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55656 1..120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55656.1.1

>prot_P-wetherbeei_contig55656.1.1 ID=prot_P-wetherbeei_contig55656.1.1|Name=mRNA_P-wetherbeei_contig55656.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=40bp
NKYSNTLTKPTINMLKRLIFFASVVLIGVTLVNCDGDKGD
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mRNA from alignment at P-wetherbeei_contig55656:1..120-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55656.1.1 ID=mRNA_P-wetherbeei_contig55656.1.1|Name=mRNA_P-wetherbeei_contig55656.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=120bp|location=Sequence derived from alignment at P-wetherbeei_contig55656:1..120- (Phaeothamnion wetherbeei SAG_119_79)
AACAAGTACTCTAATACTCTAACCAAACCAACGATCAATATGTTGAAACG
ACTAATTTTCTTTGCTTCGGTAGTCTTAATCGGCGTAACCCTGGTAAACT
GTGATGGTGACAAAGGCGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55656:1..120-

>mRNA_P-wetherbeei_contig55656.1.1 ID=mRNA_P-wetherbeei_contig55656.1.1|Name=mRNA_P-wetherbeei_contig55656.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=120bp|location=Sequence derived from alignment at P-wetherbeei_contig55656:1..120- (Phaeothamnion wetherbeei SAG_119_79)
AACAAGTACTCTAATACTCTAACCAAACCAACGATCAATATGTTGAAACG
ACTAATTTTCTTTGCTTCGGTAGTCTTAATCGGCGTAACCCTGGTAAACT
GTGATGGTGACAAAGGCGAT
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