mRNA_P-wetherbeei_contig5560.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5560.1.1
Unique NamemRNA_P-wetherbeei_contig5560.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5560.1.1 vs. uniprot
Match: D8LLQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ6_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 2.900e-36
Identity = 66/104 (63.46%), Postives = 83/104 (79.81%), Query Frame = 1 
Query:  577 MQEKAGRMQAKLHMYNTFLLKITSLHNWTDPTRTKIWLALVTLLAVVLATVPSRYLWAAAVIYLFTDPIRPPDKVLPELLWEDFWRGLPVESSTHLNLQMAAIY 888
            MQ++AGR QAKLH YN  LL++ SLH W+DP RTK+W A V+LLA +LA VP+RY +AA V++LFT+P+RP  K + ELL EDFW GLPVES TH N++MAAIY
Sbjct:    1 MQDRAGRTQAKLHAYNAVLLRVKSLHAWSDPGRTKVWAAAVSLLAALLAIVPARYTFAALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIY 104
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BLAST of mRNA_P-wetherbeei_contig5560.1.1 vs. uniprot
Match: A0A6H5L705_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L705_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 1.310e-34
Identity = 72/111 (64.86%), Postives = 87/111 (78.38%), Query Frame = 1 
Query:  556 IFKRVKLMQEKAGRMQAKLHMYNTFLLKITSLHNWTDPTRTKIWLALVTLLAVVLATVPSRYLWAAAVIYLFTDPIRPPDKVLPELLWEDFWRGLPVESSTHLNLQMAAIY 888
            I  RVK MQ++AGR QAKLH YN  LL++ SLH W+DP RTK+W A V+LLA VLA VP+RY +AA V++LFT+PIRP  K + ELL EDFW GLPVES TH N++MAAIY
Sbjct:  417 IISRVKGMQDRAGRTQAKLHAYNAVLLRVKSLHAWSDPGRTKVWAAAVSLLAAVLAIVPARYTFAALVLFLFTEPIRPETKNIAELLLEDFWEGLPVESGTHTNVRMAAIY 527
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BLAST of mRNA_P-wetherbeei_contig5560.1.1 vs. uniprot
Match: A0A835YWJ6_9STRA (PRT_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWJ6_9STRA)

HSP 1 Score: 124 bits (311), Expect = 4.770e-31
Identity = 60/101 (59.41%), Postives = 76/101 (75.25%), Query Frame = 1 
Query:  598 MQAKLHMYNTFLLKITSLHNWTDPTRTKIWLALVTLLAVVLATVPSRYLWAAAVIYLFTDPIRPPDKVLPELLWEDFWRGLPVESSTHLNLQMAAIYREQK 900
            MQAKLH YN  LLK+ SL  WTDPTRTK+++  +   A++LAT+P RY WA AV++LFT P+R   K +PELL +DFWRGLPV+S+ H NL MAAIY  Q+
Sbjct:    1 MQAKLHAYNVALLKLRSLVAWTDPTRTKVFVLFLLFAALLLATIPLRYTWAGAVVFLFTKPLRSMKKTVPELLLDDFWRGLPVDSALHTNLDMAAIYTLQE 101
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BLAST of mRNA_P-wetherbeei_contig5560.1.1 vs. uniprot
Match: D8LLQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ4_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.560e-10
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:  748 AAAVIYLFTDPIRPPDKVLPELLWEDFWRGLPVESSTHLNLQMAAIY 888
            AA V++LFT+P+RP  K + ELL EDFW GLPVES TH N++MAAIY
Sbjct:  103 AALVLFLFTEPVRPKTKNIAELLLEDFWEGLPVESGTHTNVRMAAIY 149
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BLAST of mRNA_P-wetherbeei_contig5560.1.1 vs. uniprot
Match: A0A482R3M7_9EURY (DUF639 domain-containing protein (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482R3M7_9EURY)

HSP 1 Score: 62.4 bits (150), Expect = 9.630e-7
Identity = 30/88 (34.09%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:  583 EKAGRMQAKLHMYNTFLLKITSLHNWTDPTRTKIWLALVTLLAVVLATVPSRYLWAAAVIYLFTDPIRPPDKVLPELLWEDFWRGLPV 846
            E+ GRMQ ++H  +   LKI SL+ W DP RT++++ ++ L A+++  +  R++     +   T P RP    +  + W  FW GLPV
Sbjct:  530 EQLGRMQLRMHNMSVIGLKIRSLYTWRDPNRTRLYVGILFLSALIITVLSLRWVVILFCLLQLTKPFRPRKNGVATVAWRRFWSGLPV 617
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5560.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LLQ6_ECTSI2.900e-3663.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L705_9PHAE1.310e-3464.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YWJ6_9STRA4.770e-3159.41PRT_C domain-containing protein n=1 Tax=Tribonema ... [more]
D8LLQ4_ECTSI1.560e-1065.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A482R3M7_9EURY9.630e-734.09DUF639 domain-containing protein (Fragment) n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5560contigP-wetherbeei_contig5560:2089..3655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009037075.1
PFAMsPH
Model size1309
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.03e-12
EggNOG OGs29GBP@1|root,2RPHW@2759|Eukaryota
DescriptionDomain present in PSD-95, Dlg, and ZO-1/2.
Cds size861
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.9902718-UTR-P-wetherbeei_contig5560:2088..24791683186827.9902718-UTR-P-wetherbeei_contig5560:2088..2479Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5560 2089..2479 -
1683186828.0204751-UTR-P-wetherbeei_contig5560:3598..36551683186828.0204751-UTR-P-wetherbeei_contig5560:3598..3655Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5560 3599..3655 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186828.0014215-CDS-P-wetherbeei_contig5560:2479..27941683186828.0014215-CDS-P-wetherbeei_contig5560:2479..2794Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5560 2480..2794 -
1683186828.0110285-CDS-P-wetherbeei_contig5560:3052..35981683186828.0110285-CDS-P-wetherbeei_contig5560:3052..3598Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5560 3053..3598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5560.1.1prot_P-wetherbeei_contig5560.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5560 2480..3598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5560.1.1

>prot_P-wetherbeei_contig5560.1.1 ID=prot_P-wetherbeei_contig5560.1.1|Name=mRNA_P-wetherbeei_contig5560.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=287bp
MGTSPRPAGRGFGALNGFVGSVSGGGGRGTGSFRKESSAGKWLRRQQPQS
QRQLGGADDASAATAGPVSADHRAPAGGTATVSPSGADPLSSEGEAFFDE
DSDDSGALDEEPAAVAAATTAAAATALEEQEDDEWGADGMDAGGSSLEGE
DLDGGEAPKQVRQQESIFKRVKLMQEKAGRMQAKLHMYNTFLLKITSLHN
WTDPTRTKIWLALVTLLAVVLATVPSRYLWAAAVIYLFTDPIRPPDKVLP
ELLWEDFWRGLPVESSTHLNLQMAAIYREQKKEKEA*
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mRNA from alignment at P-wetherbeei_contig5560:2089..3655-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5560.1.1 ID=mRNA_P-wetherbeei_contig5560.1.1|Name=mRNA_P-wetherbeei_contig5560.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1567bp|location=Sequence derived from alignment at P-wetherbeei_contig5560:2089..3655- (Phaeothamnion wetherbeei SAG_119_79)
GGGACACTGGCGGCGGTCGCGGCGGCGGCGTCGGCGGCGGCGACGGCGGC
GGCGGGGATGGGCACGAGCCCGCGGCCGGCCGGGCGGGGTTTTGGCGCGC
TCAATGGCTTTGTCGGCAGCGTCAGTGGCGGCGGCGGCCGCGGCACTGGC
TCCTTCAGGAAGGAATCGTCTGCGGGCAAGTGGCTCCGACGGCAACAGCC
GCAGTCGCAGCGCCAGCTCGGAGGAGCCGACGACGCCTCTGCGGCGACGG
CGGGTCCGGTGTCTGCCGACCACCGCGCTCCGGCAGGTGGAACCGCCACC
GTATCTCCATCGGGCGCCGATCCGCTTTCGAGCGAGGGAGAAGCGTTCTT
CGACGAAGATTCGGACGATTCGGGCGCTCTGGATGAGGAACCGGCGGCAG
TGGCGGCGGCGACAACAGCGGCGGCGGCCACGGCTCTGGAGGAGCAGGAG
GACGATGAGTGGGGGGCTGATGGGATGGACGCCGGGGGCAGCAGCTTGGA
AGGAGAGGATCTGGACGGCGGGGAGGCGCCGAAGCAGGTGCGGCAGCAGG
AGAGTATCTTCAAGCGCGTCAAGCTTATGCAAGAGAAGGCTGGGCGGATG
CAGGTATGGATCTTGCGGAAGTGGCGTCGACGGCACCCGGCCATTCGCCA
TCGGCGTGCTGGTTGGAAATGCCGGTATAAACATCGTTGCCTTTTGCCAT
TGCATTGGCATCGAACGCTCTTCTCACGTTTTTGTACCGATTCTCCTATT
GGCAAGCGCCGCTTCGCCCCCGCCGCTTTCTTTTCTCCTCTCTCCTCTGA
TCTCTTTTCCCTTCCTTTCCTTTCGTGCCTTTCCTCGTTATGCGGATCTC
GAATTTTGCAGGCCAAGCTGCACATGTACAACACCTTTCTGCTCAAAATC
ACCTCCCTCCACAACTGGACCGACCCCACGCGCACCAAGATCTGGCTGGC
GCTCGTCACCCTGCTGGCTGTCGTCCTTGCCACGGTCCCTTCCCGCTACC
TCTGGGCGGCCGCCGTCATCTACCTCTTCACGGACCCGATCCGGCCACCT
GACAAAGTCCTGCCGGAGCTGCTCTGGGAAGACTTTTGGCGCGGGCTGCC
CGTCGAGAGCAGCACGCACTTGAATCTGCAGATGGCGGCCATCTACCGGG
AGCAGAAGAAGGAGAAGGAGGCATGAGTGGCGGCAGAAGGATGATGGTGG
CGGCGACGGCAGTATCGCGGTTATGGCGACGGCAGCGGCAGTGGGGGCAG
CATCAATGAGCAGTGGCGGCTGCTCTGGGGCTGACGGCACGATGGGACCG
CACGTCGGCGCAGCGTCAAAGACAAAGGGCCAGCCGCATACCAAACCAGT
TGAATTGTTTTAATGGCACTGAAATTCCCTAGATCCGTAGTCCTCATGGA
AGCAATAGTGAGAGAGGGCATTGAGTCAGCGGCAAGATACATAGGGCACG
AATCCCAGGCATTAAAGGAAAAGTCACATAGGGAGGGAACACGTAAGCAG
GAACGGCACACGTGCTACGAGCGAAGAAGAGAGCGCCATCGAAAACCTTA
CGCCATCAATATTACGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5560:2089..3655-

>mRNA_P-wetherbeei_contig5560.1.1 ID=mRNA_P-wetherbeei_contig5560.1.1|Name=mRNA_P-wetherbeei_contig5560.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=861bp|location=Sequence derived from alignment at P-wetherbeei_contig5560:2089..3655- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCACGAGCCCGCGGCCGGCCGGGCGGGGTTTTGGCGCGCTCAATGG
CTTTGTCGGCAGCGTCAGTGGCGGCGGCGGCCGCGGCACTGGCTCCTTCA
GGAAGGAATCGTCTGCGGGCAAGTGGCTCCGACGGCAACAGCCGCAGTCG
CAGCGCCAGCTCGGAGGAGCCGACGACGCCTCTGCGGCGACGGCGGGTCC
GGTGTCTGCCGACCACCGCGCTCCGGCAGGTGGAACCGCCACCGTATCTC
CATCGGGCGCCGATCCGCTTTCGAGCGAGGGAGAAGCGTTCTTCGACGAA
GATTCGGACGATTCGGGCGCTCTGGATGAGGAACCGGCGGCAGTGGCGGC
GGCGACAACAGCGGCGGCGGCCACGGCTCTGGAGGAGCAGGAGGACGATG
AGTGGGGGGCTGATGGGATGGACGCCGGGGGCAGCAGCTTGGAAGGAGAG
GATCTGGACGGCGGGGAGGCGCCGAAGCAGGTGCGGCAGCAGGAGAGTAT
CTTCAAGCGCGTCAAGCTTATGCAAGAGAAGGCTGGGCGGATGCAGGCCA
AGCTGCACATGTACAACACCTTTCTGCTCAAAATCACCTCCCTCCACAAC
TGGACCGACCCCACGCGCACCAAGATCTGGCTGGCGCTCGTCACCCTGCT
GGCTGTCGTCCTTGCCACGGTCCCTTCCCGCTACCTCTGGGCGGCCGCCG
TCATCTACCTCTTCACGGACCCGATCCGGCCACCTGACAAAGTCCTGCCG
GAGCTGCTCTGGGAAGACTTTTGGCGCGGGCTGCCCGTCGAGAGCAGCAC
GCACTTGAATCTGCAGATGGCGGCCATCTACCGGGAGCAGAAGAAGGAGA
AGGAGGCATGA
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