mRNA_P-wetherbeei_contig55598.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55598.1.1
Unique NamemRNA_P-wetherbeei_contig55598.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55598.1.1 vs. uniprot
Match: A0A2V8TT13_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8TT13_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 3.890e-8
Identity = 35/104 (33.65%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:   16 AVTLLNPSGWELHLHVVRLLGSPWGK-FLNEWTPLWVNPSAYGAFPAFLLVALVAAAWLWRTQKIPLWEALCILAVGLLTLTGWRHVPLFAWTVIPLTAQLLAN 324
            A +L+NP G++LH+HVV  L S W +  + E+        +   F A LL+ L+AA +L+R +++   E L I+    ++L   RHVP++     PL A+ +A 
Sbjct:  249 AASLINPYGYQLHVHVVEYLRSDWIRNAIQEFQSPTFRSESMLQFEALLLIGLIAAGFLFRRRRVV--EGLWIVFFAHMSLASVRHVPVYVTVAAPLIAREIAQ 350
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BLAST of mRNA_P-wetherbeei_contig55598.1.1 vs. uniprot
Match: A0A832M5H2_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A832M5H2_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 4.060e-6
Identity = 41/108 (37.96%), Postives = 54/108 (50.00%), Query Frame = 1 
Query:    7 LVGAVTLLNPSGWELHLHVVRLLGSPWGKFLNEWTP-LWVNPSAYGAFPAFLLVALVAAAWLWRTQKIPLWEALCILAVGLLTLTGWRHVPLFAWTVIP---LTAQLL 318
            L  A+TL NP GWELH H++RLLGS   +F +E+ P L V     G F    ++ L  AA   R + I   E    L +     +  RHV LF    +P   L+AQ L
Sbjct:  220 LAAALTLANPWGWELHRHILRLLGSASQEFWHEYQPPLAVGGLNVGVFAGLAVLLLGGAAA--RVKGIRPGEWASALVLLFFAFSAVRHVNLFVIAALPAAALSAQAL 325
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55598.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V8TT13_9BACT3.890e-833.65Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
A0A832M5H2_9BACT4.060e-637.96Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55598contigP-wetherbeei_contig55598:33..383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog357808.RoseRS_3760
Model size351
Max annot lvl32061|Chloroflexia
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.25e-06
EggNOG OGsCOG1287@1|root,COG1287@2|Bacteria,2GANB@200795|Chloroflexi,376UI@32061|Chloroflexia
Descriptionoligosaccharyl transferase activity
Cds size351
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186827.851117-CDS-P-wetherbeei_contig55598:32..3831683186827.851117-CDS-P-wetherbeei_contig55598:32..383Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55598 33..383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55598.1.1prot_P-wetherbeei_contig55598.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55598 33..383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55598.1.1

>prot_P-wetherbeei_contig55598.1.1 ID=prot_P-wetherbeei_contig55598.1.1|Name=mRNA_P-wetherbeei_contig55598.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=117bp
VLLVGAVTLLNPSGWELHLHVVRLLGSPWGKFLNEWTPLWVNPSAYGAFP
AFLLVALVAAAWLWRTQKIPLWEALCILAVGLLTLTGWRHVPLFAWTVIP
LTAQLLANIAIPRISRP
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mRNA from alignment at P-wetherbeei_contig55598:33..383+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55598.1.1 ID=mRNA_P-wetherbeei_contig55598.1.1|Name=mRNA_P-wetherbeei_contig55598.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig55598:33..383+ (Phaeothamnion wetherbeei SAG_119_79)
GTCCTTCTGGTAGGGGCCGTGACGCTTCTCAATCCGTCTGGCTGGGAGCT
CCACCTCCACGTTGTGCGCCTCCTGGGCAGCCCCTGGGGGAAATTTCTCA
ACGAGTGGACTCCTTTGTGGGTCAACCCCAGCGCCTACGGCGCCTTCCCG
GCCTTCCTCCTGGTCGCCCTGGTCGCGGCTGCGTGGCTCTGGCGGACCCA
GAAAATCCCCCTCTGGGAGGCCCTGTGCATTCTTGCTGTCGGCCTCCTCA
CACTGACCGGATGGCGCCACGTGCCACTCTTCGCCTGGACCGTCATCCCC
CTGACCGCCCAGCTCTTGGCGAACATCGCAATCCCGCGCATCTCGCGCCC
C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55598:33..383+

>mRNA_P-wetherbeei_contig55598.1.1 ID=mRNA_P-wetherbeei_contig55598.1.1|Name=mRNA_P-wetherbeei_contig55598.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig55598:33..383+ (Phaeothamnion wetherbeei SAG_119_79)
GTCCTTCTGGTAGGGGCCGTGACGCTTCTCAATCCGTCTGGCTGGGAGCT
CCACCTCCACGTTGTGCGCCTCCTGGGCAGCCCCTGGGGGAAATTTCTCA
ACGAGTGGACTCCTTTGTGGGTCAACCCCAGCGCCTACGGCGCCTTCCCG
GCCTTCCTCCTGGTCGCCCTGGTCGCGGCTGCGTGGCTCTGGCGGACCCA
GAAAATCCCCCTCTGGGAGGCCCTGTGCATTCTTGCTGTCGGCCTCCTCA
CACTGACCGGATGGCGCCACGTGCCACTCTTCGCCTGGACCGTCATCCCC
CTGACCGCCCAGCTCTTGGCGAACATCGCAATCCCGCGCATCTCGCGCCC
C
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