mRNA_P-wetherbeei_contig55521.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55521.2.1
Unique NamemRNA_P-wetherbeei_contig55521.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55521.2.1 vs. uniprot
Match: A0A6L6AFT2_9ACTN (TIGR03885 family FMN-dependent LLM class oxidoreductase n=4 Tax=root TaxID=1 RepID=A0A6L6AFT2_9ACTN)

HSP 1 Score: 180 bits (456), Expect = 2.150e-54
Identity = 85/87 (97.70%), Postives = 85/87 (97.70%), Query Frame = 1 
Query:    1 MTRIGFHASHEQISPSELLSDVQHAEQAGFDMAMCSDHLGPWSARQGHSGYAWSWLGAALATTGLAIGCVSAPGQRYHPAVHAQKIA 261
            MTRIGFHASHEQISPSELL DVQH EQAGFDMAMCSDHLGPWSARQGHSGYAWSWLGAALATTGLAIGCVSAPGQRYHPAVHAQKIA
Sbjct:    1 MTRIGFHASHEQISPSELLRDVQHVEQAGFDMAMCSDHLGPWSARQGHSGYAWSWLGAALATTGLAIGCVSAPGQRYHPAVHAQKIA 87
[Close]
BLAST of mRNA_P-wetherbeei_contig55521.2.1 vs. uniprot
Match: A0A0Q9PSI4_9ACTN (LLM class F420-dependent oxidoreductase n=1 Tax=Nocardioides sp. Soil774 TaxID=1736408 RepID=A0A0Q9PSI4_9ACTN)

HSP 1 Score: 170 bits (431), Expect = 1.640e-50
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 1 
Query:    1 MTRIGFHASHEQISPSELLSDVQHAEQAGFDMAMCSDHLGPWSARQGHSGYAWSWLGAALATTGLAIGCVSAPGQRYHPAVHAQKIA 261
            MTRIGFHASHEQISP +LL DVQHAE +GFDM MCSDHLGPWSARQGHSGYAWSWLGAALATTGL +GCVSAPGQRYHPAVHAQKIA
Sbjct:    1 MTRIGFHASHEQISPRDLLRDVQHAEGSGFDMEMCSDHLGPWSARQGHSGYAWSWLGAALATTGLGLGCVSAPGQRYHPAVHAQKIA 87
[Close]
BLAST of mRNA_P-wetherbeei_contig55521.2.1 vs. uniprot
Match: A0A1U7MUU7_9MICO (LLM class F420-dependent oxidoreductase n=2 Tax=unclassified Ornithinimicrobium TaxID=2615080 RepID=A0A1U7MUU7_9MICO)

HSP 1 Score: 166 bits (421), Expect = 3.230e-49
Identity = 78/87 (89.66%), Postives = 82/87 (94.25%), Query Frame = 1 
Query:    1 MTRIGFHASHEQISPSELLSDVQHAEQAGFDMAMCSDHLGPWSARQGHSGYAWSWLGAALATTGLAIGCVSAPGQRYHPAVHAQKIA 261
            MTRIGFHASHEQISP +LL+DVQHAE+AGF MAMCSDHL PWSARQGHSGYAWSWLGAALATT L +GCVSAPGQRYHPAVHAQKIA
Sbjct:    1 MTRIGFHASHEQISPRQLLADVQHAERAGFQMAMCSDHLFPWSARQGHSGYAWSWLGAALATTDLPLGCVSAPGQRYHPAVHAQKIA 87
[Close]
BLAST of mRNA_P-wetherbeei_contig55521.2.1 vs. uniprot
Match: UPI000D74DD41 (TIGR03885 family FMN-dependent LLM class oxidoreductase n=1 Tax=Nocardioides solisilvae TaxID=1542435 RepID=UPI000D74DD41)

HSP 1 Score: 166 bits (419), Expect = 7.700e-49
Identity = 77/87 (88.51%), Postives = 81/87 (93.10%), Query Frame = 1 
Query:    1 MTRIGFHASHEQISPSELLSDVQHAEQAGFDMAMCSDHLGPWSARQGHSGYAWSWLGAALATTGLAIGCVSAPGQRYHPAVHAQKIA 261
            MTRIGFHASHEQISP +LL+DVQHAEQAGF MAMCSDHL PWSARQGHSGY W+WLGAALATT L +GCVSAPGQRYHPAVHAQKIA
Sbjct:    1 MTRIGFHASHEQISPRQLLADVQHAEQAGFQMAMCSDHLVPWSARQGHSGYTWAWLGAALATTSLRLGCVSAPGQRYHPAVHAQKIA 87
[Close]
BLAST of mRNA_P-wetherbeei_contig55521.2.1 vs. uniprot
Match: A0A0Q9QK58_9ACTN (LLM class F420-dependent oxidoreductase n=1 Tax=Nocardioides sp. Soil777 TaxID=1736409 RepID=A0A0Q9QK58_9ACTN)

HSP 1 Score: 165 bits (417), Expect = 1.320e-48
Identity = 75/87 (86.21%), Postives = 81/87 (93.10%), Query Frame = 1 
Query:    1 MTRIGFHASHEQISPSELLSDVQHAEQAGFDMAMCSDHLGPWSARQGHSGYAWSWLGAALATTGLAIGCVSAPGQRYHPAVHAQKIA 261
            MTRIGFHASHEQ+SP +LL+DVQHAE+AGFDMAMCSDH  PWS+R GHSGYAWSWLGAALATT LA GCVSAPGQRYHPAVHAQ+IA
Sbjct:    1 MTRIGFHASHEQVSPRQLLTDVQHAERAGFDMAMCSDHFSPWSSRHGHSGYAWSWLGAALATTDLAFGCVSAPGQRYHPAVHAQRIA 87
[Close]
BLAST of mRNA_P-wetherbeei_contig55521.2.1 vs. uniprot
Match: A0A6J4N1R8_9ACTN (Similar to F420-dependent glucose-6-phosphate dehydrogenase, Mext_1273 family n=1 Tax=uncultured Nocardioides sp. TaxID=198441 RepID=A0A6J4N1R8_9ACTN)

HSP 1 Score: 164 bits (414), Expect = 3.730e-48
Identity = 74/87 (85.06%), Postives = 81/87 (93.10%), Query Frame = 1 
Query:    1 MTRIGFHASHEQISPSELLSDVQHAEQAGFDMAMCSDHLGPWSARQGHSGYAWSWLGAALATTGLAIGCVSAPGQRYHPAVHAQKIA 261
            MTRIGFHASHEQ+SP +LL+DVQHAE+AGFDMAMCSDH  PWS+R GHSGYAW+WLGAALATT L +GCVSAPGQRYHPAVHAQKIA
Sbjct:    1 MTRIGFHASHEQVSPRQLLADVQHAERAGFDMAMCSDHFSPWSSRHGHSGYAWAWLGAALATTELTLGCVSAPGQRYHPAVHAQKIA 87
[Close]
BLAST of mRNA_P-wetherbeei_contig55521.2.1 vs. uniprot
Match: A0A6G7YK56_9ACTN (TIGR03885 family FMN-dependent LLM class oxidoreductase n=1 Tax=Nocardioides piscis TaxID=2714938 RepID=A0A6G7YK56_9ACTN)

HSP 1 Score: 164 bits (414), Expect = 4.230e-48
Identity = 75/87 (86.21%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:    1 MTRIGFHASHEQISPSELLSDVQHAEQAGFDMAMCSDHLGPWSARQGHSGYAWSWLGAALATTGLAIGCVSAPGQRYHPAVHAQKIA 261
            MTRIGFHASHEQ+SP  LL DVQHAEQAGFDMAMCSDH  PWSARQGHSGY W+WLGAALATT L +GCV+APGQRYHPAVHAQKIA
Sbjct:    1 MTRIGFHASHEQVSPRRLLRDVQHAEQAGFDMAMCSDHFAPWSARQGHSGYTWAWLGAALATTDLDLGCVTAPGQRYHPAVHAQKIA 87
[Close]
BLAST of mRNA_P-wetherbeei_contig55521.2.1 vs. uniprot
Match: A0A1Q2CBI4_9ACTN (LLM class F420-dependent oxidoreductase n=1 Tax=Tessaracoccus flavus TaxID=1610493 RepID=A0A1Q2CBI4_9ACTN)

HSP 1 Score: 162 bits (409), Expect = 2.100e-47
Identity = 75/87 (86.21%), Postives = 79/87 (90.80%), Query Frame = 1 
Query:    1 MTRIGFHASHEQISPSELLSDVQHAEQAGFDMAMCSDHLGPWSARQGHSGYAWSWLGAALATTGLAIGCVSAPGQRYHPAVHAQKIA 261
            MTRIGFHASHEQI+P +LLSDVQHAE+ GFDMAMCSDH  PWS RQGHSGYAW+WLGAALATTGL  GCVSAPGQRYHPAV AQKIA
Sbjct:    1 MTRIGFHASHEQIAPGQLLSDVQHAERMGFDMAMCSDHFAPWSERQGHSGYAWAWLGAALATTGLEFGCVSAPGQRYHPAVAAQKIA 87
[Close]
BLAST of mRNA_P-wetherbeei_contig55521.2.1 vs. uniprot
Match: R7XT48_9ACTN (Dehydrogenase n=2 Tax=Nocardioides TaxID=1839 RepID=R7XT48_9ACTN)

HSP 1 Score: 162 bits (409), Expect = 2.100e-47
Identity = 73/87 (83.91%), Postives = 81/87 (93.10%), Query Frame = 1 
Query:    1 MTRIGFHASHEQISPSELLSDVQHAEQAGFDMAMCSDHLGPWSARQGHSGYAWSWLGAALATTGLAIGCVSAPGQRYHPAVHAQKIA 261
            MTR+GFHASHEQISP +LL+DVQHAE+AGF+MAMCSDH  PWS R GH+GYAW+WLGAALATT LAIGCVSAPGQRYHPAVHAQ+IA
Sbjct:    1 MTRVGFHASHEQISPRQLLADVQHAERAGFEMAMCSDHFAPWSRRHGHAGYAWAWLGAALATTDLAIGCVSAPGQRYHPAVHAQRIA 87
[Close]
BLAST of mRNA_P-wetherbeei_contig55521.2.1 vs. uniprot
Match: UPI00049243A6 (TIGR03885 family FMN-dependent LLM class oxidoreductase n=2 Tax=Ornithinimicrobium pekingense TaxID=384677 RepID=UPI00049243A6)

HSP 1 Score: 161 bits (408), Expect = 2.970e-47
Identity = 75/87 (86.21%), Postives = 80/87 (91.95%), Query Frame = 1 
Query:    1 MTRIGFHASHEQISPSELLSDVQHAEQAGFDMAMCSDHLGPWSARQGHSGYAWSWLGAALATTGLAIGCVSAPGQRYHPAVHAQKIA 261
            M RIGFHASHEQISP +LL+DVQHAE+AGF+MAMCSDHL PWS RQGHSGY WSWLGAALATT L+ GCVSAPGQRYHPAVHAQKIA
Sbjct:    1 MMRIGFHASHEQISPRQLLADVQHAERAGFEMAMCSDHLFPWSERQGHSGYTWSWLGAALATTDLSFGCVSAPGQRYHPAVHAQKIA 87
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55521.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L6AFT2_9ACTN2.150e-5497.70TIGR03885 family FMN-dependent LLM class oxidoredu... [more]
A0A0Q9PSI4_9ACTN1.640e-5090.80LLM class F420-dependent oxidoreductase n=1 Tax=No... [more]
A0A1U7MUU7_9MICO3.230e-4989.66LLM class F420-dependent oxidoreductase n=2 Tax=un... [more]
UPI000D74DD417.700e-4988.51TIGR03885 family FMN-dependent LLM class oxidoredu... [more]
A0A0Q9QK58_9ACTN1.320e-4886.21LLM class F420-dependent oxidoreductase n=1 Tax=No... [more]
A0A6J4N1R8_9ACTN3.730e-4885.06Similar to F420-dependent glucose-6-phosphate dehy... [more]
A0A6G7YK56_9ACTN4.230e-4886.21TIGR03885 family FMN-dependent LLM class oxidoredu... [more]
A0A1Q2CBI4_9ACTN2.100e-4786.21LLM class F420-dependent oxidoreductase n=1 Tax=Te... [more]
R7XT48_9ACTN2.100e-4783.91Dehydrogenase n=2 Tax=Nocardioides TaxID=1839 RepI... [more]
UPI00049243A62.970e-4786.21TIGR03885 family FMN-dependent LLM class oxidoredu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55521contigP-wetherbeei_contig55521:263..523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog110319.CF8_3707
PFAMsBac_luciferase
Model size261
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.45e-48
EggNOG OGsCOG2141@1|root,COG2141@2|Bacteria,2GM94@201174|Actinobacteria,4DTDD@85009|Propionibacteriales
DescriptionLuciferase-like monooxygenase
Cds size261
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186826.8481832-CDS-P-wetherbeei_contig55521:262..5231683186826.8481832-CDS-P-wetherbeei_contig55521:262..523Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55521 263..523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55521.2.1prot_P-wetherbeei_contig55521.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55521 263..523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55521.2.1

>prot_P-wetherbeei_contig55521.2.1 ID=prot_P-wetherbeei_contig55521.2.1|Name=mRNA_P-wetherbeei_contig55521.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=87bp
MTRIGFHASHEQISPSELLSDVQHAEQAGFDMAMCSDHLGPWSARQGHSG
YAWSWLGAALATTGLAIGCVSAPGQRYHPAVHAQKIA
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mRNA from alignment at P-wetherbeei_contig55521:263..523+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55521.2.1 ID=mRNA_P-wetherbeei_contig55521.2.1|Name=mRNA_P-wetherbeei_contig55521.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig55521:263..523+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCCGGATCGGCTTCCACGCCTCCCACGAGCAGATCTCCCCGAGCGA
GCTGCTGAGCGACGTCCAGCATGCCGAGCAGGCAGGTTTCGACATGGCGA
TGTGCTCGGACCACCTCGGACCGTGGAGCGCCCGCCAGGGCCACTCCGGC
TACGCCTGGTCGTGGCTGGGCGCAGCGCTGGCCACCACCGGCCTCGCCAT
CGGGTGCGTCTCGGCTCCCGGTCAGCGCTACCACCCGGCGGTGCACGCCC
AGAAGATCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55521:263..523+

>mRNA_P-wetherbeei_contig55521.2.1 ID=mRNA_P-wetherbeei_contig55521.2.1|Name=mRNA_P-wetherbeei_contig55521.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=261bp|location=Sequence derived from alignment at P-wetherbeei_contig55521:263..523+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCCGGATCGGCTTCCACGCCTCCCACGAGCAGATCTCCCCGAGCGA
GCTGCTGAGCGACGTCCAGCATGCCGAGCAGGCAGGTTTCGACATGGCGA
TGTGCTCGGACCACCTCGGACCGTGGAGCGCCCGCCAGGGCCACTCCGGC
TACGCCTGGTCGTGGCTGGGCGCAGCGCTGGCCACCACCGGCCTCGCCAT
CGGGTGCGTCTCGGCTCCCGGTCAGCGCTACCACCCGGCGGTGCACGCCC
AGAAGATCGCC
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