mRNA_P-wetherbeei_contig12485.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12485.1.1
Unique NamemRNA_P-wetherbeei_contig12485.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig12485.1.1 vs. uniprot
Match: A0A7S2BWG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BWG3_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.760e-10
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 1
Query:   16 TLRATIADGRVVVGTLECVDALGNLVMGDALETTPKDPSSSGVGVARQRQMGLVMVPGKHLIKAEVRE 219
            TL+ T+ DGR VVGT +C+D   N ++ +  E T +    +GV    +R +GLVMVPGKHL+  E+ E
Sbjct:   10 TLKVTLTDGRFVVGTFQCLDKKKNFILYNC-EETRRVSDENGVEGDAKRSLGLVMVPGKHLVSVELEE 76          
BLAST of mRNA_P-wetherbeei_contig12485.1.1 vs. uniprot
Match: A0A813CYM0_9DINO (NAA38 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CYM0_9DINO)

HSP 1 Score: 60.1 bits (144), Expect = 7.350e-10
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 1
Query:   19 LRATIADGRVVVGTLECVDALGNLVMGDA-LETTPKDPSSSGVGVARQRQMGLVMVPGKHLIKAEV 213
            ++ T++DGRV++GTL+CVD LGN+V+G A L  +P   ++      RQ+ MG VMVPG ++ K +V
Sbjct:   46 VQVTVSDGRVIMGTLKCVDGLGNIVLGQAELARSPDAIAAESPQQRRQQWMGSVMVPGANVQKVQV 111          
BLAST of mRNA_P-wetherbeei_contig12485.1.1 vs. uniprot
Match: A0A0T6B2R1_9SCAR (Sm domain-containing protein n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6B2R1_9SCAR)

HSP 1 Score: 57.0 bits (136), Expect = 1.080e-8
Identity = 28/74 (37.84%), Postives = 44/74 (59.46%), Query Frame = 1
Query:   10 HRTLRATIADGRVVVGTLECVDALGNLVMGDALETTPKDPSSSGV---GVARQRQMGLVMVPGKHLIKAEVRED 222
            ++ LR T+ DGRV++G   C D   N+++G   E  P++  + GV    V   R +GLVMVPGKH++   V ++
Sbjct:   13 NQLLRITMTDGRVLIGMFFCTDRDANIILGACSEYLPEEVDAEGVVMKEVEEPRILGLVMVPGKHIVNISVDQN 86          
BLAST of mRNA_P-wetherbeei_contig12485.1.1 vs. uniprot
Match: A0A7J7BD55_9COLE (Sm domain-containing protein n=1 Tax=Lamprigera yunnana TaxID=370605 RepID=A0A7J7BD55_9COLE)

HSP 1 Score: 57.0 bits (136), Expect = 2.030e-8
Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 1
Query:   10 HRTLRATIADGRVVVGTLECVDALGNLVMGDALETTPKD-----PSSSGVGVARQRQMGLVMVPGKHLIKAEVRED 222
            ++TL+  ++DGRV++G   C D   N+++G   E  P D     PS+S   V   R +GLVMVPGKH++   + E+
Sbjct:   46 NKTLKIEMSDGRVLIGVFLCTDRDANIILGSCSEYLPDDLNLEQPSTSN-SVEEPRMLGLVMVPGKHIVSICIDEN 120          
BLAST of mRNA_P-wetherbeei_contig12485.1.1 vs. uniprot
Match: UPI000C20132C (N-alpha-acetyltransferase 38, NatC auxiliary subunit n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C20132C)

HSP 1 Score: 57.0 bits (136), Expect = 3.440e-8
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   10 HRTLRATIADGRVVVGTLECVDALGNLVMGDALETTPKDPSSSGV---GVARQRQMGLVMVPGKHL--IKAEVREDY 225
            ++ LR T++DGRV+VG L C D   N+++G   E  P++   +G     V   R +GLVMVPGKH+  I  +V E++
Sbjct:   78 NQLLRITMSDGRVLVGMLFCTDRDANIILGACSEFLPEETDENGQVIKDVEEPRILGLVMVPGKHILNISVDVNENH 154          
BLAST of mRNA_P-wetherbeei_contig12485.1.1 vs. uniprot
Match: A0A7S4DBE9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBE9_HETAK)

HSP 1 Score: 55.8 bits (133), Expect = 4.170e-8
Identity = 27/73 (36.99%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   19 LRATIADGRVVVGTLECVDALGNLVMGDALETT-PKDPSSSGVGVARQ--------RQMGLVMVPGKHLIKAE 210
            ++ T++DGR VVGT +C+D L N+++ +A+ET  P + +                 RQ+G+VMVPG+HL++ E
Sbjct:   31 IKTTLSDGRTVVGTFDCLDRLKNIILSNAVETRYPSNRNQQXXXXXXXXXXXPPSVRQLGMVMVPGRHLVRVE 103          
BLAST of mRNA_P-wetherbeei_contig12485.1.1 vs. uniprot
Match: A0A8K0D486_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0D486_9COLE)

HSP 1 Score: 55.5 bits (132), Expect = 8.290e-8
Identity = 26/74 (35.14%), Postives = 43/74 (58.11%), Query Frame = 1
Query:   10 HRTLRATIADGRVVVGTLECVDALGNLVMGDALETTPKDPS---SSGVGVARQRQMGLVMVPGKHLIKAEVRED 222
            ++  R  ++DGRV++GT  C D   N+++G   E  P++ S   S+       R +GLVMVPGKH++   + E+
Sbjct:   48 NKIFRVEMSDGRVLIGTFLCTDRDTNIILGSCSEYLPEEASACSSTSTTNEEPRMLGLVMVPGKHIVSISIDEN 121          
BLAST of mRNA_P-wetherbeei_contig12485.1.1 vs. uniprot
Match: A0A4D9CXW4_9STRA (Sm domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXW4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.670e-7
Identity = 28/70 (40.00%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   19 LRATIADGRVVVGTLECVDALGNLVMGDALETTPKDPSSSGVGVARQ----RQMGLVMVPGKHLIKAEVR 216
            LR T++DGR V G  +C+D   N+++ +A E      + +GVG   +    RQ+GLVM+PGKH+++ EV+
Sbjct:   65 LRVTLSDGRAVTGRYQCMDEHLNVILREASERRGMG-ARAGVGAGSESVQVRQLGLVMLPGKHVVRVEVK 133          
BLAST of mRNA_P-wetherbeei_contig12485.1.1 vs. uniprot
Match: A0A7J7AKT4_9COLE (Sm domain-containing protein n=1 Tax=Abscondita terminalis TaxID=2069292 RepID=A0A7J7AKT4_9COLE)

HSP 1 Score: 55.1 bits (131), Expect = 1.700e-7
Identity = 26/76 (34.21%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   10 HRTLRATIADGRVVVGTLECVDALGNLVMGDALETTPKDPSSS-----GVGVARQRQMGLVMVPGKHLIKAEVRED 222
            ++TL+  ++DGRV++G   C D   N+++G   E  P+D  S       V     R +GLVMVPGKH++   + ++
Sbjct:   48 NKTLKIEMSDGRVLIGIFLCTDRDANIILGSCSEYLPEDMKSEEATNLDVTSEEPRMLGLVMVPGKHIVSIHIDQN 123          
BLAST of mRNA_P-wetherbeei_contig12485.1.1 vs. uniprot
Match: W7TM11_9STRA (Ribonucleoprotein LSM n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM11_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 4.840e-7
Identity = 26/69 (37.68%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   19 LRATIADGRVVVGTLECVDALGNLVMGDALETT---PKDPSSSGVGVARQRQMGLVMVPGKHLIKAEVR 216
            LR T++DGR V G  +C+D   N+++ +A E      +    +GV   + R +GLVM+PGKH+++ EV+
Sbjct:   31 LRVTLSDGRAVTGRYQCMDEHLNVILREASERRGIGARAGVGAGVESVQVRHLGLVMLPGKHVVRVEVK 99          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12485.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2BWG3_9STRA3.760e-1044.12Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A813CYM0_9DINO7.350e-1045.45NAA38 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A0T6B2R1_9SCAR1.080e-837.84Sm domain-containing protein n=1 Tax=Oryctes borbo... [more]
A0A7J7BD55_9COLE2.030e-838.16Sm domain-containing protein n=1 Tax=Lamprigera yu... [more]
UPI000C20132C3.440e-840.26N-alpha-acetyltransferase 38, NatC auxiliary subun... [more]
A0A7S4DBE9_HETAK4.170e-836.99Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8K0D486_9COLE8.290e-835.14Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A4D9CXW4_9STRA1.670e-740.00Sm domain-containing protein n=1 Tax=Nannochlorops... [more]
A0A7J7AKT4_9COLE1.700e-734.21Sm domain-containing protein n=1 Tax=Abscondita te... [more]
W7TM11_9STRA4.840e-737.68Ribonucleoprotein LSM n=1 Tax=Nannochloropsis gadi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12485contigP-wetherbeei_contig12485:624..857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog5679.XP_010700283.1
PFAMsLSM
Model size234
Max annot lvl5653|Kinetoplastida
KEGG koko:K11086
KEGG Pathwayko03040,ko05322,map03040,map05322
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.73e-09
EggNOG OGsCOG1958@1|root,KOG3168@2759|Eukaryota,3XVZE@5653|Kinetoplastida
Descriptionsmall nuclear ribonucleoprotein
Cds size234
COG categoryA
BRITEko00000,ko00001,ko00002,ko03032,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185950.2381496-CDS-P-wetherbeei_contig12485:623..8571683185950.2381496-CDS-P-wetherbeei_contig12485:623..857Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12485 624..857 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12485.1.1prot_P-wetherbeei_contig12485.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12485 624..857 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12485.1.1

>prot_P-wetherbeei_contig12485.1.1 ID=prot_P-wetherbeei_contig12485.1.1|Name=mRNA_P-wetherbeei_contig12485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
HHSHRTLRATIADGRVVVGTLECVDALGNLVMGDALETTPKDPSSSGVGV
ARQRQMGLVMVPGKHLIKAEVREDYVL*
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mRNA from alignment at P-wetherbeei_contig12485:624..857+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12485.1.1 ID=mRNA_P-wetherbeei_contig12485.1.1|Name=mRNA_P-wetherbeei_contig12485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig12485:624..857+ (Phaeothamnion wetherbeei SAG_119_79)
CATCACTCACACAGGACCCTCCGTGCTACCATCGCGGACGGACGCGTGGT CGTGGGGACCCTGGAGTGCGTGGACGCCCTCGGCAACCTCGTGATGGGCG ACGCCCTCGAGACCACTCCCAAGGACCCGTCCTCGTCCGGAGTTGGCGTC GCGCGGCAGCGGCAGATGGGGCTCGTGATGGTGCCAGGCAAGCACCTCAT CAAGGCGGAAGTCCGGGAAGACTACGTTCTGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12485:624..857+

>mRNA_P-wetherbeei_contig12485.1.1 ID=mRNA_P-wetherbeei_contig12485.1.1|Name=mRNA_P-wetherbeei_contig12485.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig12485:624..857+ (Phaeothamnion wetherbeei SAG_119_79)
CATCACTCACACAGGACCCTCCGTGCTACCATCGCGGACGGACGCGTGGT
CGTGGGGACCCTGGAGTGCGTGGACGCCCTCGGCAACCTCGTGATGGGCG
ACGCCCTCGAGACCACTCCCAAGGACCCGTCCTCGTCCGGAGTTGGCGTC
GCGCGGCAGCGGCAGATGGGGCTCGTGATGGTGCCAGGCAAGCACCTCAT
CAAGGCGGAAGTCCGGGAAGACTACGTTCTGTGA
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