mRNA_P-wetherbeei_contig55411.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55411.1.1
Unique NamemRNA_P-wetherbeei_contig55411.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55411.1.1 vs. uniprot
Match: A0A3D5DBI0_9GAMM (Chromosome partitioning protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DBI0_9GAMM)

HSP 1 Score: 155 bits (392), Expect = 1.820e-45
Identity = 72/115 (62.61%), Postives = 94/115 (81.74%), Query Frame = 1
Query:    1 PVVPSPVDIRAAQRFFGELREVRPLVENDVKICTVASRVRDGARTSDDLEDFLLDQKLPSGRRFPFLTWLRQSTHYLKAAEKGLSIFELPPSASAVDREYWVPLLKWLASPRSMP 345
            P+VPSP+DIRAAQRF GELR +R +++ DVK+ TVA+RVR+G   +++LED+L + KLPSGR+FPF+T LR S +YL+AAE+GLSIFE  P A+A DREYW PL +WL S RS+P
Sbjct:  103 PIVPSPIDIRAAQRFLGELRGLRNVIKTDVKMATVANRVREGTLIANELEDYLYELKLPSGRKFPFMTVLRSSANYLRAAERGLSIFEFAPVATAADREYWNPLTRWLKSARSLP 217          
BLAST of mRNA_P-wetherbeei_contig55411.1.1 vs. uniprot
Match: A0A523PAN4_9PROT (Chromosome partitioning protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523PAN4_9PROT)

HSP 1 Score: 149 bits (377), Expect = 3.390e-43
Identity = 70/117 (59.83%), Postives = 91/117 (77.78%), Query Frame = 1
Query:    1 PVVPSPVDIRAAQRFFGELREVRPLVENDVKICTVASRVRDGARTSDDLEDFLLDQKLPSGRRFPFLTWLRQSTHYLKAAEKGLSIFELPPSASAVDREYWVPLLKWLASPRSMPEG 351
            PVVPSP+DIRAAQRF  ELRE+R +++ DVK+ T+ +RVR+GA  +++LED+L    LPSGR+ PFLT LR S +Y+ AAE+GLSIFE  P A+A DREYW PL +WL + RS+PE 
Sbjct:  103 PVVPSPIDIRAAQRFLQELRELRHVIKTDVKLATIGNRVREGAFITNNLEDYLFGLTLPSGRKLPFLTLLRSSANYIHAAERGLSIFEFAPIATAADREYWQPLTRWLQNKRSVPEN 219          
BLAST of mRNA_P-wetherbeei_contig55411.1.1 vs. uniprot
Match: A0A1Z8WV61_9GAMM (CbiA domain-containing protein n=1 Tax=Methylococcaceae bacterium TMED69 TaxID=1986766 RepID=A0A1Z8WV61_9GAMM)

HSP 1 Score: 149 bits (375), Expect = 6.420e-43
Identity = 69/115 (60.00%), Postives = 91/115 (79.13%), Query Frame = 1
Query:    1 PVVPSPVDIRAAQRFFGELREVRPLVENDVKICTVASRVRDGARTSDDLEDFLLDQKLPSGRRFPFLTWLRQSTHYLKAAEKGLSIFELPPSASAVDREYWVPLLKWLASPRSMP 345
            PV+PSP+DIRAAQRFFGELR++R  V N+VKI T+A++ R+ +R + +LED L   KLPSGR+FPFLT LRQS +Y++AA++G+SIFE  P  +A+DREYW PL  WL S +S P
Sbjct:  103 PVIPSPMDIRAAQRFFGELRKIRKNVYNEVKIATIANKTRENSREAKNLEDLLYSFKLPSGRKFPFLTLLRQSANYIRAAQRGMSIFEFAPLTTALDREYWKPLTGWLESKKSRP 217          
BLAST of mRNA_P-wetherbeei_contig55411.1.1 vs. uniprot
Match: A0A2D7S627_9GAMM (Chromosome partitioning protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2D7S627_9GAMM)

HSP 1 Score: 129 bits (324), Expect = 3.330e-35
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 PVVPSPVDIRAAQRFFGELREVRPLVENDVKICTVASRVRDGARTSDDLEDFLLDQKLPSGRRFPFLTWLRQSTHYLKAAEKGLSIFELPPSASAVDREYWVPLLKWLASPRSMP 345
            PVV SP+DIRAA+RF  EL   +  + N +KI T+A+RVR+    +  LE +L + KLP+G++ PF+T LR S +Y+ A+E+GLSIFELPPS +  DRE W PLL+WL S RS+P
Sbjct:  103 PVVASPIDIRAAERFLDELFSFKGSINNKIKIATIANRVREDTLIAAKLEHYLYNIKLPNGKKLPFMTMLRSSQNYINASERGLSIFELPPSKTYYDREQWAPLLRWLNSKRSIP 217          
BLAST of mRNA_P-wetherbeei_contig55411.1.1 vs. uniprot
Match: A0A382AZ66_9ZZZZ (CbiA domain-containing protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382AZ66_9ZZZZ)

HSP 1 Score: 127 bits (320), Expect = 1.330e-34
Identity = 61/115 (53.04%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 PVVPSPVDIRAAQRFFGELREVRPLVENDVKICTVASRVRDGARTSDDLEDFLLDQKLPSGRRFPFLTWLRQSTHYLKAAEKGLSIFELPPSASAVDREYWVPLLKWLASPRSMP 345
            P++ SP+DIRAA+RF  EL   +  + N +KI TVA+RVR+    +  LE +L + KLP+G+R PF+T LR S +Y++AAE+GLSIFEL PS +  DRE W PLL+WL S RS+P
Sbjct:  103 PIIASPIDIRAAERFLSELFSFKGTINNKIKIATVANRVREDTLIAAKLEHYLDNVKLPNGKRLPFMTMLRASQNYIRAAERGLSIFELAPSKTYYDREQWEPLLRWLNSKRSIP 217          
BLAST of mRNA_P-wetherbeei_contig55411.1.1 vs. uniprot
Match: A0A2E6HMD5_9GAMM (Chromosome partitioning protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A2E6HMD5_9GAMM)

HSP 1 Score: 127 bits (320), Expect = 1.370e-34
Identity = 59/115 (51.30%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 PVVPSPVDIRAAQRFFGELREVRPLVENDVKICTVASRVRDGARTSDDLEDFLLDQKLPSGRRFPFLTWLRQSTHYLKAAEKGLSIFELPPSASAVDREYWVPLLKWLASPRSMP 345
            P++ SP+DIRAA+ F  EL   +  ++N +KI T+A+RVR+    +  LE +L + KLP+G++ PF+T LR S +Y+ AAE+GLSIFELPPS +  DRE W PLL+WL S RS+P
Sbjct:  103 PIIASPIDIRAAEHFLKELFSFKGSIDNKIKIATIANRVREDTLIAAKLEHYLDNVKLPNGKKLPFMTMLRASQNYIHAAERGLSIFELPPSKTYYDREQWAPLLRWLTSKRSLP 217          
BLAST of mRNA_P-wetherbeei_contig55411.1.1 vs. uniprot
Match: A0A2E6KR93_9GAMM (Chromosome partitioning protein n=2 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E6KR93_9GAMM)

HSP 1 Score: 126 bits (316), Expect = 5.340e-34
Identity = 58/116 (50.00%), Postives = 85/116 (73.28%), Query Frame = 1
Query:    1 PVVPSPVDIRAAQRFFGELREVRPLVENDVKICTVASRVRDGARTSDDLEDFLLDQKLPSGRRFPFLTWLRQSTHYLKAAEKGLSIFELPPSASAVDREYWVPLLKWLASPRSMPE 348
            P++ SP+DIRAA+RF  EL  +R  + N +KI T+A+RVR+    +  LE++L + +LP+G++ PF+T LR S +Y+ A+E+GLSIFEL PS +  DRE W PLL+WL S RS+P+
Sbjct:  103 PIIASPIDIRAAERFLNELFSLRGSINNKIKIATIANRVREDTLIAAKLENYLNNIRLPNGKKLPFMTMLRASQNYINASEQGLSIFELAPSKTYYDREQWAPLLRWLNSKRSIPK 218          
BLAST of mRNA_P-wetherbeei_contig55411.1.1 vs. uniprot
Match: A0A849MKB6_9PROT (ParA family protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A849MKB6_9PROT)

HSP 1 Score: 124 bits (311), Expect = 3.110e-33
Identity = 60/116 (51.72%), Postives = 83/116 (71.55%), Query Frame = 1
Query:    1 PVVPSPVDIRAAQRFFGELREVRPLVENDVKICTVASRVRDGARTSDDLEDFLLDQKLPSGRRFPFLTWLRQSTHYLKAAEKGLSIFELPPSASAVDREYWVPLLKWLASPRSMPE 348
            PV+ SP+D+RAA+RF  EL  ++  V N +KI TVA+RVR+    +  LE +L   KLP+G++ PF+T LRQS +Y++AAE GL IFEL PS +  DRE W PLL+WL S +S+P+
Sbjct:  103 PVLASPIDMRAAERFLHELFSLKGTVNNKIKIATVANRVREDTLAAAKLEYYLNHIKLPNGKKLPFMTMLRQSQNYIRAAESGLGIFELAPSKTYYDREQWAPLLRWLNSNKSLPK 218          
BLAST of mRNA_P-wetherbeei_contig55411.1.1 vs. uniprot
Match: A0A1Y5FPA4_9GAMM (CbiA domain-containing protein n=1 Tax=Gammaproteobacteria bacterium 53_120_T64 TaxID=1856295 RepID=A0A1Y5FPA4_9GAMM)

HSP 1 Score: 124 bits (311), Expect = 3.270e-33
Identity = 56/115 (48.70%), Postives = 85/115 (73.91%), Query Frame = 1
Query:    1 PVVPSPVDIRAAQRFFGELREVRPLVENDVKICTVASRVRDGARTSDDLEDFLLDQKLPSGRRFPFLTWLRQSTHYLKAAEKGLSIFELPPSASAVDREYWVPLLKWLASPRSMP 345
            PV+PSP+DIRAA+ F G+L  +R ++  +VK+ T+A+RVR+    ++DL+D+L   KLPSG++ P+L  LR S +Y++AAE+GLSIFE  P+ + +DRE W  + +WL S RS+P
Sbjct:  103 PVLPSPIDIRAAEHFIGKLNALRRVLNTEVKLATMANRVRENTLAAEDLDDYLEMIKLPSGKKVPYLAMLRASQNYIRAAEEGLSIFEFAPARTLLDRECWTRVFRWLDSQRSLP 217          
BLAST of mRNA_P-wetherbeei_contig55411.1.1 vs. uniprot
Match: A0A2E0PX84_9GAMM (Chromosome partitioning protein n=1 Tax=Legionellales bacterium TaxID=2026754 RepID=A0A2E0PX84_9GAMM)

HSP 1 Score: 123 bits (309), Expect = 6.210e-33
Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 1
Query:    1 PVVPSPVDIRAAQRFFGELREVRPLVENDVKICTVASRVRDGARTSDDLEDFLLDQKLPSGRRFPFLTWLRQSTHYLKAAEKGLSIFELPPSASAVDREYWVPLLKWLASPRSMPEG 351
            PV+ SP+DIRAA+ F  +L  ++  + + +KI TVA+RVR+    +  LE +L   KLP G+R PF+T LRQS +Y+ AAE+GLSIFELPPS +  DRE W PLL+WL S +S P  
Sbjct:  103 PVIASPIDIRAAEHFIEKLFSLKGTINHRIKIATVANRVREDTLIAAKLEYYLDKLKLPDGKRLPFVTMLRQSQNYINAAERGLSIFELPPSKTYYDREQWEPLLRWLNSSKSQPNN 219          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55411.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DBI0_9GAMM1.820e-4562.61Chromosome partitioning protein n=1 Tax=Gammaprote... [more]
A0A523PAN4_9PROT3.390e-4359.83Chromosome partitioning protein n=1 Tax=Proteobact... [more]
A0A1Z8WV61_9GAMM6.420e-4360.00CbiA domain-containing protein n=1 Tax=Methylococc... [more]
A0A2D7S627_9GAMM3.330e-3553.04Chromosome partitioning protein n=1 Tax=Legionella... [more]
A0A382AZ66_9ZZZZ1.330e-3453.04CbiA domain-containing protein n=1 Tax=marine meta... [more]
A0A2E6HMD5_9GAMM1.370e-3451.30Chromosome partitioning protein n=2 Tax=Gammaprote... [more]
A0A2E6KR93_9GAMM5.340e-3450.00Chromosome partitioning protein n=2 Tax=Legionella... [more]
A0A849MKB6_9PROT3.110e-3351.72ParA family protein n=1 Tax=Proteobacteria bacteri... [more]
A0A1Y5FPA4_9GAMM3.270e-3348.70CbiA domain-containing protein n=1 Tax=Gammaproteo... [more]
A0A2E0PX84_9GAMM6.210e-3351.28Chromosome partitioning protein n=1 Tax=Legionella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55411contigP-wetherbeei_contig55411:170..523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog713586.KB900536_gene2148
PFAMsAAA_31,CbiA
Model size354
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K03496
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.51e-25
EggNOG OGsCOG1192@1|root,COG1192@2|Bacteria,1QBJX@1224|Proteobacteria,1S739@1236|Gammaproteobacteria
Descriptioninvolved in chromosome partitioning
Cds size354
COG categoryD
BRITEko00000,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186825.6403153-CDS-P-wetherbeei_contig55411:169..5231683186825.6403153-CDS-P-wetherbeei_contig55411:169..523Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55411 170..523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55411.1.1prot_P-wetherbeei_contig55411.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55411 170..523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55411.1.1

>prot_P-wetherbeei_contig55411.1.1 ID=prot_P-wetherbeei_contig55411.1.1|Name=mRNA_P-wetherbeei_contig55411.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
PVVPSPVDIRAAQRFFGELREVRPLVENDVKICTVASRVRDGARTSDDLE
DFLLDQKLPSGRRFPFLTWLRQSTHYLKAAEKGLSIFELPPSASAVDREY
WVPLLKWLASPRSMPEG*
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mRNA from alignment at P-wetherbeei_contig55411:170..523-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55411.1.1 ID=mRNA_P-wetherbeei_contig55411.1.1|Name=mRNA_P-wetherbeei_contig55411.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig55411:170..523- (Phaeothamnion wetherbeei SAG_119_79)
CCGGTGGTGCCCTCGCCGGTCGACATCCGCGCTGCGCAACGCTTCTTCGG CGAATTGCGCGAAGTGCGGCCGCTGGTCGAGAACGATGTGAAGATCTGTA CGGTCGCGAGCCGCGTGCGTGACGGCGCCCGCACCTCCGACGACCTCGAA GATTTCCTGCTCGATCAGAAGCTGCCCTCCGGGCGCCGCTTCCCCTTCCT GACCTGGCTGCGTCAGAGCACCCATTACCTCAAGGCCGCTGAGAAAGGCC TTTCGATCTTTGAACTGCCACCCTCGGCTTCGGCGGTTGATCGGGAATAT TGGGTGCCGCTGCTGAAGTGGCTGGCGAGTCCGCGCAGCATGCCGGAGGG CTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55411:170..523-

>mRNA_P-wetherbeei_contig55411.1.1 ID=mRNA_P-wetherbeei_contig55411.1.1|Name=mRNA_P-wetherbeei_contig55411.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig55411:170..523- (Phaeothamnion wetherbeei SAG_119_79)
CCGGTGGTGCCCTCGCCGGTCGACATCCGCGCTGCGCAACGCTTCTTCGG
CGAATTGCGCGAAGTGCGGCCGCTGGTCGAGAACGATGTGAAGATCTGTA
CGGTCGCGAGCCGCGTGCGTGACGGCGCCCGCACCTCCGACGACCTCGAA
GATTTCCTGCTCGATCAGAAGCTGCCCTCCGGGCGCCGCTTCCCCTTCCT
GACCTGGCTGCGTCAGAGCACCCATTACCTCAAGGCCGCTGAGAAAGGCC
TTTCGATCTTTGAACTGCCACCCTCGGCTTCGGCGGTTGATCGGGAATAT
TGGGTGCCGCTGCTGAAGTGGCTGGCGAGTCCGCGCAGCATGCCGGAGGG
CTGA
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