mRNA_P-wetherbeei_contig55289.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55289.1.1
Unique NamemRNA_P-wetherbeei_contig55289.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55289.1.1 vs. uniprot
Match: UPI001903D212 (MmcQ/YjbR family DNA-binding protein n=1 Tax=Aestuariivirga sp. YIM B02566 TaxID=2800327 RepID=UPI001903D212)

HSP 1 Score: 108 bits (270), Expect = 2.990e-29
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 1
Query:    1 MTYKEYNAFCKSLPATTYVMQWGGSHVWKVGGKVFAIGGWDDGEQPRITCKVSPIAYE 174
            MTY++YNAFC SLPATTYVMQWGGSHVWKVGGKVFA+GGWD+GE P IT KVS +A+E
Sbjct:    1 MTYEQYNAFCGSLPATTYVMQWGGSHVWKVGGKVFAVGGWDEGEHPHITFKVSDLAFE 58          
BLAST of mRNA_P-wetherbeei_contig55289.1.1 vs. uniprot
Match: A0A6G6WZK5_9HYPH (MmcQ/YjbR family DNA-binding protein n=1 Tax=Nordella sp. HKS 07 TaxID=2712222 RepID=A0A6G6WZK5_9HYPH)

HSP 1 Score: 104 bits (260), Expect = 9.940e-28
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 1
Query:    1 MTYKEYNAFCKSLPATTYVMQWGGSHVWKVGGKVFAIGGWDDGEQPRITCKVSPIAYE 174
            MTY++YNAFC SLPATTYVMQWGGSHVWKVGGKVFAIGGWD+  +P IT KVS +A+E
Sbjct:    1 MTYEQYNAFCASLPATTYVMQWGGSHVWKVGGKVFAIGGWDEEAEPHITFKVSDLAFE 58          
BLAST of mRNA_P-wetherbeei_contig55289.1.1 vs. uniprot
Match: A0A537NP95_9PROT (MmcQ/YjbR family DNA-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NP95_9PROT)

HSP 1 Score: 103 bits (257), Expect = 2.840e-27
Identity = 45/58 (77.59%), Postives = 51/58 (87.93%), Query Frame = 1
Query:    1 MTYKEYNAFCKSLPATTYVMQWGGSHVWKVGGKVFAIGGWDDGEQPRITCKVSPIAYE 174
            M Y++YNAFC+ LP+TTYV+QWGGSHVWKVGGKVFAIGGWDDG +  IT KVS IAYE
Sbjct:    1 MNYRQYNAFCRRLPSTTYVVQWGGSHVWKVGGKVFAIGGWDDGAEAHITFKVSDIAYE 58          
BLAST of mRNA_P-wetherbeei_contig55289.1.1 vs. uniprot
Match: UPI00190C0D12 (MmcQ/YjbR family DNA-binding protein n=1 Tax=Bradyrhizobium diazoefficiens TaxID=1355477 RepID=UPI00190C0D12)

HSP 1 Score: 100 bits (250), Expect = 3.030e-26
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1
Query:    1 MTYKEYNAFCKSLPATTYVMQWGGSHVWKVGGKVFAIGGWDDGEQPRITCKVSPIAYE 174
            MTYKEYNAFC+ LPATTYV+QWGGSHVWKVGGKVFAIGGW D ++P  T KV+ IAYE
Sbjct:    1 MTYKEYNAFCRKLPATTYVVQWGGSHVWKVGGKVFAIGGWHD-DEPAYTFKVNDIAYE 57          
BLAST of mRNA_P-wetherbeei_contig55289.1.1 vs. uniprot
Match: A0A8F7ZK17_9HYPH (Uncharacterized protein n=1 Tax=Methylovirgula sp. HY1 TaxID=2822761 RepID=A0A8F7ZK17_9HYPH)

HSP 1 Score: 100 bits (250), Expect = 3.300e-26
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1
Query:    1 MTYKEYNAFCKSLPATTYVMQWGGSHVWKVGGKVFAIGGWDDGEQPRITCKVSPIAYE 174
            MTY+E+NAFC+SLP TTYV+QWGGSHVWKVGGKVFAIGGW D E P IT KVS +AYE
Sbjct:    1 MTYEEFNAFCRSLPVTTYVVQWGGSHVWKVGGKVFAIGGWQDAE-PAITFKVSDVAYE 57          
BLAST of mRNA_P-wetherbeei_contig55289.1.1 vs. uniprot
Match: A0A7V2ALK3_9PROT (MmcQ/YjbR family DNA-binding protein n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A7V2ALK3_9PROT)

HSP 1 Score: 100 bits (248), Expect = 6.110e-26
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 1
Query:    1 MTYKEYNAFCKSLPATTYVMQWGGSHVWKVGGKVFAIGGWDDGEQPRITCKVSPIAYE 174
            MTY+EYNA+C+SL ATTYVMQWGGSHVWKVGGKVFAIGGW +G+ P IT KVS +A+E
Sbjct:    1 MTYQEYNAYCESLCATTYVMQWGGSHVWKVGGKVFAIGGWGNGKYPGITFKVSEMAFE 58          
BLAST of mRNA_P-wetherbeei_contig55289.1.1 vs. uniprot
Match: UPI00036019EC (MmcQ/YjbR family DNA-binding protein n=1 Tax=Methylosinus sp. LW4 TaxID=136993 RepID=UPI00036019EC)

HSP 1 Score: 100 bits (248), Expect = 6.460e-26
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1
Query:    1 MTYKEYNAFCKSLPATTYVMQWGGSHVWKVGGKVFAIGGWDDGEQPRITCKVSPIAYE 174
            MTY EYNAFC +LPAT++V+QWGGSHVWKVGGKVFAIGGWD+GE PR T KV  IAYE
Sbjct:    1 MTYDEYNAFCAALPATSHVVQWGGSHVWKVGGKVFAIGGWDEGE-PRFTFKVGDIAYE 57          
BLAST of mRNA_P-wetherbeei_contig55289.1.1 vs. uniprot
Match: UPI000417994C (MmcQ/YjbR family DNA-binding protein n=1 Tax=Methylocapsa acidiphila TaxID=133552 RepID=UPI000417994C)

HSP 1 Score: 99.8 bits (247), Expect = 9.700e-26
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 1
Query:    1 MTYKEYNAFCKSLPATTYVMQWGGSHVWKVGGKVFAIGGWDDGEQPRITCKVSPIAYE 174
            MTY EYNAFC +LPAT++V+QWGGSHVWKVGGKVFAIGGWD+G  PR+T KVS IAYE
Sbjct:    1 MTYDEYNAFCGALPATSHVVQWGGSHVWKVGGKVFAIGGWDEGA-PRLTFKVSDIAYE 57          
BLAST of mRNA_P-wetherbeei_contig55289.1.1 vs. uniprot
Match: A0A2E2HG13_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E2HG13_9GAMM)

HSP 1 Score: 98.2 bits (243), Expect = 3.720e-25
Identity = 42/58 (72.41%), Postives = 50/58 (86.21%), Query Frame = 1
Query:    1 MTYKEYNAFCKSLPATTYVMQWGGSHVWKVGGKVFAIGGWDDGEQPRITCKVSPIAYE 174
            MTY EY+AFC SLP TT V+QWGG+HVWKVGGKVFAIGGW D ++P IT KVSP++Y+
Sbjct:    1 MTYDEYDAFCASLPVTTQVIQWGGAHVWKVGGKVFAIGGWSDDDKPAITFKVSPLSYD 58          
BLAST of mRNA_P-wetherbeei_contig55289.1.1 vs. uniprot
Match: A0A6B8KDH5_9HYPH (MmcQ/YjbR family DNA-binding protein n=2 Tax=Methylocystaceae TaxID=31993 RepID=A0A6B8KDH5_9HYPH)

HSP 1 Score: 97.8 bits (242), Expect = 5.280e-25
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1
Query:    1 MTYKEYNAFCKSLPATTYVMQWGGSHVWKVGGKVFAIGGWDDGEQPRITCKVSPIAYE 174
            MTY EYNAFC +LPAT++V+QWGGS VWKVGGKVFAIGGWD+GE PR T KVS IAYE
Sbjct:    1 MTYDEYNAFCGALPATSHVVQWGGSDVWKVGGKVFAIGGWDEGE-PRFTFKVSDIAYE 57          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55289.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001903D2122.990e-2981.03MmcQ/YjbR family DNA-binding protein n=1 Tax=Aestu... [more]
A0A6G6WZK5_9HYPH9.940e-2879.31MmcQ/YjbR family DNA-binding protein n=1 Tax=Norde... [more]
A0A537NP95_9PROT2.840e-2777.59MmcQ/YjbR family DNA-binding protein n=1 Tax=Alpha... [more]
UPI00190C0D123.030e-2679.31MmcQ/YjbR family DNA-binding protein n=1 Tax=Brady... [more]
A0A8F7ZK17_9HYPH3.300e-2679.31Uncharacterized protein n=1 Tax=Methylovirgula sp.... [more]
A0A7V2ALK3_9PROT6.110e-2677.59MmcQ/YjbR family DNA-binding protein n=1 Tax=Rhodo... [more]
UPI00036019EC6.460e-2679.31MmcQ/YjbR family DNA-binding protein n=1 Tax=Methy... [more]
UPI000417994C9.700e-2679.31MmcQ/YjbR family DNA-binding protein n=1 Tax=Methy... [more]
A0A2E2HG13_9GAMM3.720e-2572.41Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A6B8KDH5_9HYPH5.280e-2579.31MmcQ/YjbR family DNA-binding protein n=2 Tax=Methy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55289contigP-wetherbeei_contig55289:352..525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog136993.KB900627_gene172
PFAMsYjbR
Model size174
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.06e-26
EggNOG OGsCOG2315@1|root,COG2315@2|Bacteria,1RHEZ@1224|Proteobacteria,2U97K@28211|Alphaproteobacteria,36YC1@31993|Methylocystaceae
DescriptionYjbR
Cds size174
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186824.2467022-CDS-P-wetherbeei_contig55289:351..5251683186824.2467022-CDS-P-wetherbeei_contig55289:351..525Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55289 352..525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55289.1.1prot_P-wetherbeei_contig55289.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55289 352..525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55289.1.1

>prot_P-wetherbeei_contig55289.1.1 ID=prot_P-wetherbeei_contig55289.1.1|Name=mRNA_P-wetherbeei_contig55289.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=58bp
MTYKEYNAFCKSLPATTYVMQWGGSHVWKVGGKVFAIGGWDDGEQPRITC
KVSPIAYE
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mRNA from alignment at P-wetherbeei_contig55289:352..525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55289.1.1 ID=mRNA_P-wetherbeei_contig55289.1.1|Name=mRNA_P-wetherbeei_contig55289.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig55289:352..525+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCTACAAAGAGTACAACGCCTTCTGTAAATCCCTGCCCGCCACCAC CTATGTCATGCAATGGGGCGGGTCGCATGTGTGGAAGGTCGGCGGCAAGG TCTTCGCCATTGGCGGGTGGGACGACGGCGAACAGCCGCGCATCACCTGC AAGGTCTCGCCCATCGCCTACGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55289:352..525+

>mRNA_P-wetherbeei_contig55289.1.1 ID=mRNA_P-wetherbeei_contig55289.1.1|Name=mRNA_P-wetherbeei_contig55289.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=174bp|location=Sequence derived from alignment at P-wetherbeei_contig55289:352..525+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCTACAAAGAGTACAACGCCTTCTGTAAATCCCTGCCCGCCACCAC
CTATGTCATGCAATGGGGCGGGTCGCATGTGTGGAAGGTCGGCGGCAAGG
TCTTCGCCATTGGCGGGTGGGACGACGGCGAACAGCCGCGCATCACCTGC
AAGGTCTCGCCCATCGCCTACGAG
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