mRNA_P-wetherbeei_contig5524.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5524.1.1
Unique NamemRNA_P-wetherbeei_contig5524.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5524.1.1 vs. uniprot
Match: A0A521M4X6_9HYPH (RidA family protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521M4X6_9HYPH)

HSP 1 Score: 310 bits (795), Expect = 5.510e-106
Identity = 158/165 (95.76%), Postives = 160/165 (96.97%), Query Frame = 1 
Query:    1 MKVEQRLKELGIKLTKPTTPVGSYVNAVRTGNLLYLAGKGPGLPGKPLPVGKLGRDFSIDQGYGFARDTGLSILATLKEELGDLDRVKRIVKVLGMVNATSEYGSQPEVINGCSDLFVEVFGERGRHARSAVGMGSLPRGIPVEIEVIVEVTDGPAPRAVVAKPA 495
            MKVEQRLKELGI+LTKPTTPVGSYVNAVRTGNLLYLAGKGPGLPGKPLPVGKLGRDFSIDQGYGFARDTGLSILA LKEELGDLDRVKRIVKVLGMVNATSEYGSQPEVINGCSDLFVEVFGERGRHARSAVGMGSLPRGIPVEIEVIVE+ D PA RAV AKPA
Sbjct:    1 MKVEQRLKELGIELTKPTTPVGSYVNAVRTGNLLYLAGKGPGLPGKPLPVGKLGRDFSIDQGYGFARDTGLSILAALKEELGDLDRVKRIVKVLGMVNATSEYGSQPEVINGCSDLFVEVFGERGRHARSAVGMGSLPRGIPVEIEVIVEIEDVPARRAVAAKPA 165
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BLAST of mRNA_P-wetherbeei_contig5524.1.1 vs. uniprot
Match: A0A521LMT7_9HYPH (RidA family protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521LMT7_9HYPH)

HSP 1 Score: 284 bits (727), Expect = 1.140e-95
Identity = 141/159 (88.68%), Postives = 152/159 (95.60%), Query Frame = 1 
Query:    1 MKVEQRLKELGIKLTKPTTPVGSYVNAVRTGNLLYLAGKGPGLPGKPLPVGKLGRDFSIDQGYGFARDTGLSILATLKEELGDLDRVKRIVKVLGMVNATSEYGSQPEVINGCSDLFVEVFGERGRHARSAVGMGSLPRGIPVEIEVIVEVTDGPAPRA 477
            MK EQRLKELGI+LT+PT+P+ SYVNAVRTGNLLYLAGKGPGLPGKPLPVGKLGRDFSI+QGYGFAR+TGLSILA LK ELGDLDRVKRIVKVLGMVNATSEYGSQPEVINGCSDLFV+VFG+RGRHARSAVG+GSLPRGIPVEIEVIVE+ D PA +A
Sbjct:    1 MKTEQRLKELGIELTQPTSPMASYVNAVRTGNLLYLAGKGPGLPGKPLPVGKLGRDFSIEQGYGFARETGLSILAVLKAELGDLDRVKRIVKVLGMVNATSEYGSQPEVINGCSDLFVDVFGDRGRHARSAVGVGSLPRGIPVEIEVIVEIEDAPARKA 159
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BLAST of mRNA_P-wetherbeei_contig5524.1.1 vs. uniprot
Match: A0A259MC62_9PROT (YjgF_endoribonc domain-containing protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A259MC62_9PROT)

HSP 1 Score: 267 bits (683), Expect = 8.020e-89
Identity = 139/167 (83.23%), Postives = 149/167 (89.22%), Query Frame = 1 
Query:    1 MKVEQRLKELGIKLTKPTTPVGSYVNAVRTGNLLYLAGKGPGLPGKPLPVGKLGRDFSIDQGYGFARDTGLSILATLKEELGDLDRVKRIVKVLGMVNATSEYGSQPEVINGCSDLFVEVFGERGRHARSAVGMGSLPRGIPVEIEVIVEVTDG---PAPRAVVAKP 492
            MKVE+RLKELGI+L + TTP+GSYVNAVRTGNLLY+AGKGPGLPGKPLPVGK+GRDFS++Q    ARDTGLSIL  LK ELGDLDRVKRIVKVLGMVNATSEYGS PEVINGCSDLFVEVFGE+GRHARSAVGMGSLPRGIPVEIEVIVE+ D    PAP A  AKP
Sbjct:    1 MKVEERLKELGIELPEATTPMGSYVNAVRTGNLLYMAGKGPGLPGKPLPVGKVGRDFSLEQANRLARDTGLSILGALKAELGDLDRVKRIVKVLGMVNATSEYGSHPEVINGCSDLFVEVFGEKGRHARSAVGMGSLPRGIPVEIEVIVELEDDAPPPAP-AATAKP 166
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BLAST of mRNA_P-wetherbeei_contig5524.1.1 vs. uniprot
Match: A0A537MPS6_9PROT (RidA family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537MPS6_9PROT)

HSP 1 Score: 265 bits (678), Expect = 4.320e-88
Identity = 134/174 (77.01%), Postives = 152/174 (87.36%), Query Frame = 1 
Query:    1 MKVEQRLKELGIKLTKPTTPVGSYVNAVRTGNLLYLAGKGPGLPGKPLPVGKLGRDFSIDQGYGFARDTGLSILATLKEELGDLDRVKRIVKVLGMVNATSEYGSQPEVINGCSDLFVEVFGERGRHARSAVGMGSLPRGIPVEIEVIVEVTDGPA--PRAVVAKPAAKRKAAP 516
            MK EQRLKELGI+L K T+P+ +YVNAVRTGNLLYLAGKGPGLPGKPLP GK+GRDF+++ GY  AR+TGL+++A +K ELGDLDRVKRIVKVLGMVNAT E+G+QPEVINGCSDLFVEVFG+RGRHARSAVG+GSLPRGIPVEIEVIVEV    A  PRA VA   A +KAAP
Sbjct:    1 MKTEQRLKELGIELAKATSPMANYVNAVRTGNLLYLAGKGPGLPGKPLPTGKVGRDFTVEDGYVHARETGLNLIAVMKAELGDLDRVKRIVKVLGMVNATPEFGNQPEVINGCSDLFVEVFGDRGRHARSAVGLGSLPRGIPVEIEVIVEVEGDAASTPRAAVAAKPAAKKAAP 174
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BLAST of mRNA_P-wetherbeei_contig5524.1.1 vs. uniprot
Match: A0A512NM43_9HYPH (YjgF_endoribonc domain-containing protein n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A512NM43_9HYPH)

HSP 1 Score: 265 bits (676), Expect = 7.610e-88
Identity = 130/159 (81.76%), Postives = 145/159 (91.19%), Query Frame = 1 
Query:    1 MKVEQRLKELGIKLTKPTTPVGSYVNAVRTGNLLYLAGKGPGLPGKPLPVGKLGRDFSIDQGYGFARDTGLSILATLKEELGDLDRVKRIVKVLGMVNATSEYGSQPEVINGCSDLFVEVFGERGRHARSAVGMGSLPRGIPVEIEVIVEVTDGPAPRA 477
            MK EQRL+ELGI+LTKPT+P+ +YVNAVRTGNLLYLAGKGPGLPG PLPVGK+GRDF+ +QGY +AR TGLS++A +K ELGDLDRVKRIVK+LGMVNAT E+G QPEVINGCSDLFV VFG+RGRHARSAVGMGSLPRGIPVEIEVIVEV D PA RA
Sbjct:    1 MKTEQRLQELGIELTKPTSPMANYVNAVRTGNLLYLAGKGPGLPGHPLPVGKVGRDFTKEQGYEYARQTGLSLIAVMKAELGDLDRVKRIVKLLGMVNATPEFGEQPEVINGCSDLFVSVFGDRGRHARSAVGMGSLPRGIPVEIEVIVEVEDAPARRA 159
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BLAST of mRNA_P-wetherbeei_contig5524.1.1 vs. uniprot
Match: A0A521QVX2_9HYPH (RidA family protein n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521QVX2_9HYPH)

HSP 1 Score: 262 bits (669), Expect = 7.720e-87
Identity = 132/166 (79.52%), Postives = 146/166 (87.95%), Query Frame = 1 
Query:    1 MKVEQRLKELGIKLTKPTTPVGSYVNAVRTGNLLYLAGKGPGLPGKPLPVGKLGRDFSIDQGYGFARDTGLSILATLKEELGDLDRVKRIVKVLGMVNATSEYGSQPEVINGCSDLFVEVFGERGRHARSAVGMGSLPRGIPVEIEVIVEVTDGPAPRAVVAKPAA 498
            MKVE+RLKELGI+L KPTTP+GSYVNAVRTGNLLY+AGKGPG PG PLPVGK+GRDF++++ Y  AR  GLSI+A +K ELGDLDRVKRIVKVLGMVNA  E+G QPEVINGCSDLFV VFGERGRHARSAVGM SLPRGIPVEIEVI+EV D P+ RA  AKPAA
Sbjct:    1 MKVEKRLKELGIELAKPTTPMGSYVNAVRTGNLLYMAGKGPGQPGHPLPVGKVGRDFTVEEAYEHARSVGLSIIAAIKAELGDLDRVKRIVKVLGMVNAIPEFGQQPEVINGCSDLFVSVFGERGRHARSAVGMASLPRGIPVEIEVILEVEDAPSRRAA-AKPAA 165
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BLAST of mRNA_P-wetherbeei_contig5524.1.1 vs. uniprot
Match: A0A1T4SVM2_9HYPH (Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4SVM2_9HYPH)

HSP 1 Score: 243 bits (619), Expect = 3.970e-79
Identity = 123/174 (70.69%), Postives = 140/174 (80.46%), Query Frame = 1 
Query:    1 MKVEQRLKELGIKLTKPTTPVGSYVNAVRTGNLLYLAGKGPGLPGKPLPVGKLGRDFSIDQGYGFARDTGLSILATLKEELGDLDRVKRIVKVLGMVNATSEYGSQPEVINGCSDLFVEVFGERGRHARSAVGMGSLPRGIPVEIEVIVEVTDGPAPRAVV--AKPAAKRKAAP 516
            MK EQRLKELGI L   T+P+ +YVNAVRTGNLLYLAGKGPGLPGKPLPVGK+GRD +++Q YG AR+TGL+++A +K ELGDLDRVKRIVKVLGMVNAT ++G  PEVINGCSDL VEVFGERG+HARSAVG+GSLPRGIPVEI                  AKPA KRK+AP
Sbjct:    1 MKTEQRLKELGIALAPATSPMANYVNAVRTGNLLYLAGKGPGLPGKPLPVGKVGRDMTVEQAYGHARETGLNLIAVMKAELGDLDRVKRIVKVLGMVNATPDFGQHPEVINGCSDLLVEVFGERGKHARSAVGLGSLPRGIPVEIXXXXXXXXXXXXXXXXXXAKPAPKRKSAP 174
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BLAST of mRNA_P-wetherbeei_contig5524.1.1 vs. uniprot
Match: A0A2H5YX10_9BACT (YjgF_endoribonc domain-containing protein n=4 Tax=Bacteria TaxID=2 RepID=A0A2H5YX10_9BACT)

HSP 1 Score: 213 bits (541), Expect = 8.230e-68
Identity = 106/151 (70.20%), Postives = 123/151 (81.46%), Query Frame = 1 
Query:    1 MKVEQRLKELGIKLTKPTTPVGSYVNAVRTGNLLYLAGKGPGLPGKPLPVGKLGRDFSIDQGYGFARDTGLSILATLKEELGDLDRVKRIVKVLGMVNATSEYGSQPEVINGCSDLFVEVFGERGRHARSAVGMGSLPRGIPVEIEVIVEV 453
            MKVEQRL+ELGI+L     P G+YV+AVR+GNLL+LAGKGP  P   +P GK+GR+ S+++ Y  AR  GL +LA LK+ELGDLDRVKR+VKVLGMVNA  E+   PEVINGCSDLFVEVFGERGRHARSAVGMGSLPR I VEIE IVE+
Sbjct:    1 MKVEQRLQELGIELPPVPAPAGNYVHAVRSGNLLFLAGKGPWNPDGTMPTGKVGREVSVEEAYRHARSVGLVLLAVLKQELGDLDRVKRVVKVLGMVNAVPEFDRHPEVINGCSDLFVEVFGERGRHARSAVGMGSLPRNITVEIEAIVEI 151
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BLAST of mRNA_P-wetherbeei_contig5524.1.1 vs. uniprot
Match: A0A537BZ40_9PROT (RidA family protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537BZ40_9PROT)

HSP 1 Score: 212 bits (539), Expect = 2.380e-67
Identity = 110/169 (65.09%), Postives = 129/169 (76.33%), Query Frame = 1 
Query:    1 MKVEQRLKELGIKLTKPTTPVGSYVNAVRTGNLLYLAGKGPGLPGKPLPVGKLGRDFSIDQGYGFARDTGLSILATLKEELGDLDRVKRIVKVLGMVNATSEYGSQPEVINGCSDLFVEVFGERGRHARSAVGMGSLPRGIPVEIEVIVEVTDGPAPRAVVAKPAAKRK 507
            M  E+RLKELGI+L  P  PV +YVNAVRTGNLL+LAG+GPG        GKLG +F+++QGY  AR  GL++LA +K ELG LDRV R+VK+LGMVN T E+  QP+VINGCSDLFVEVFG+RG+HARSAVGMGSLP GIPVEIE IVEV  G    A   K AAK+K
Sbjct:    1 MSAEKRLKELGIELAAPAPPVANYVNAVRTGNLLFLAGRGPG-----AVKGKLGAEFTVEQGYQHARSVGLALLAVMKAELGSLDRVSRVVKLLGMVNGTPEFTDQPKVINGCSDLFVEVFGDRGKHARSAVGMGSLPNGIPVEIECIVEVRPG----AAAPKKAAKKK 160
[Close]
BLAST of mRNA_P-wetherbeei_contig5524.1.1 vs. uniprot
Match: A0A2H5YQM5_9BACT (YjgF_endoribonc domain-containing protein n=1 Tax=bacterium HR26 TaxID=2035421 RepID=A0A2H5YQM5_9BACT)

HSP 1 Score: 209 bits (531), Expect = 2.730e-66
Identity = 103/151 (68.21%), Postives = 122/151 (80.79%), Query Frame = 1 
Query:    1 MKVEQRLKELGIKLTKPTTPVGSYVNAVRTGNLLYLAGKGPGLPGKPLPVGKLGRDFSIDQGYGFARDTGLSILATLKEELGDLDRVKRIVKVLGMVNATSEYGSQPEVINGCSDLFVEVFGERGRHARSAVGMGSLPRGIPVEIEVIVEV 453
            MK EQRL ELGI+L     P G+YV+AV+TGNLL+LAGKGP  P   +P GK+GRD++ ++ Y  AR  GL+++A +K+ LGDLDRVKR+VKVLGMVNA  E+G  P+VINGCSDLFVEVFGERGRHARSAVGMGSLP GI VEIE IVEV
Sbjct:    1 MKTEQRLAELGIELPPVPQPAGNYVHAVQTGNLLFLAGKGPFNPDGSVPTGKVGRDYTTEEAYQHARSVGLTLIAVMKDVLGDLDRVKRVVKVLGMVNAVPEFGEHPKVINGCSDLFVEVFGERGRHARSAVGMGSLPNGITVEIEAIVEV 151
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5524.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521M4X6_9HYPH5.510e-10695.76RidA family protein n=1 Tax=Reyranella sp. TaxID=1... [more]
A0A521LMT7_9HYPH1.140e-9588.68RidA family protein n=1 Tax=Reyranella sp. TaxID=1... [more]
A0A259MC62_9PROT8.020e-8983.23YjgF_endoribonc domain-containing protein n=3 Tax=... [more]
A0A537MPS6_9PROT4.320e-8877.01RidA family protein n=1 Tax=Alphaproteobacteria ba... [more]
A0A512NM43_9HYPH7.610e-8881.76YjgF_endoribonc domain-containing protein n=3 Tax=... [more]
A0A521QVX2_9HYPH7.720e-8779.52RidA family protein n=1 Tax=Reyranella sp. TaxID=1... [more]
A0A1T4SVM2_9HYPH3.970e-7970.69Enamine deaminase RidA, house cleaning of reactive... [more]
A0A2H5YX10_9BACT8.230e-6870.20YjgF_endoribonc domain-containing protein n=4 Tax=... [more]
A0A537BZ40_9PROT2.380e-6765.09RidA family protein n=2 Tax=Betaproteobacteria bac... [more]
A0A2H5YQM5_9BACT2.730e-6668.21YjgF_endoribonc domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5524contigP-wetherbeei_contig5524:118..684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1205680.CAKO01000042_gene5387
PFAMsYjgF_endoribonc
Model size567
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.88e-85
EggNOG OGsCOG0251@1|root,COG0251@2|Bacteria,1RHMZ@1224|Proteobacteria,2U5PZ@28211|Alphaproteobacteria,2JWKB@204441|Rhodospirillales
DescriptionYjgF/chorismate_mutase-like, putative endoribonuclease
Cds size567
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186823.8482606-CDS-P-wetherbeei_contig5524:117..6841683186823.8482606-CDS-P-wetherbeei_contig5524:117..684Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5524 118..684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5524.1.1prot_P-wetherbeei_contig5524.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5524 118..684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5524.1.1

>prot_P-wetherbeei_contig5524.1.1 ID=prot_P-wetherbeei_contig5524.1.1|Name=mRNA_P-wetherbeei_contig5524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=189bp
MKVEQRLKELGIKLTKPTTPVGSYVNAVRTGNLLYLAGKGPGLPGKPLPV
GKLGRDFSIDQGYGFARDTGLSILATLKEELGDLDRVKRIVKVLGMVNAT
SEYGSQPEVINGCSDLFVEVFGERGRHARSAVGMGSLPRGIPVEIEVIVE
VTDGPAPRAVVAKPAAKRKAAPKAKKAAKKKAAKKKKL*
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mRNA from alignment at P-wetherbeei_contig5524:118..684-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5524.1.1 ID=mRNA_P-wetherbeei_contig5524.1.1|Name=mRNA_P-wetherbeei_contig5524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig5524:118..684- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGTCGAGCAACGATTGAAGGAACTCGGTATCAAGCTCACCAAGCC
CACGACGCCGGTGGGCAGCTACGTGAACGCCGTGCGCACGGGAAATCTGC
TCTATCTCGCCGGCAAGGGTCCGGGCCTGCCGGGCAAGCCGCTGCCCGTG
GGCAAGCTCGGCCGCGATTTCTCGATCGATCAGGGTTACGGCTTCGCGCG
CGACACCGGCCTCAGCATTCTCGCCACCCTCAAGGAAGAGCTGGGCGACC
TCGATCGCGTGAAGCGCATCGTCAAGGTTCTGGGCATGGTCAACGCCACG
TCGGAATACGGCAGCCAGCCGGAAGTGATCAACGGCTGCTCCGATCTCTT
CGTCGAAGTGTTCGGCGAGCGCGGCCGCCACGCGCGCTCCGCCGTCGGCA
TGGGCTCGCTGCCGCGCGGCATTCCGGTCGAGATCGAAGTGATCGTCGAA
GTGACGGATGGTCCGGCGCCCCGCGCCGTTGTCGCCAAGCCGGCGGCCAA
GCGCAAGGCCGCACCCAAGGCCAAGAAGGCTGCCAAGAAGAAGGCGGCGA
AGAAGAAAAAGCTCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5524:118..684-

>mRNA_P-wetherbeei_contig5524.1.1 ID=mRNA_P-wetherbeei_contig5524.1.1|Name=mRNA_P-wetherbeei_contig5524.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig5524:118..684- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGTCGAGCAACGATTGAAGGAACTCGGTATCAAGCTCACCAAGCC
CACGACGCCGGTGGGCAGCTACGTGAACGCCGTGCGCACGGGAAATCTGC
TCTATCTCGCCGGCAAGGGTCCGGGCCTGCCGGGCAAGCCGCTGCCCGTG
GGCAAGCTCGGCCGCGATTTCTCGATCGATCAGGGTTACGGCTTCGCGCG
CGACACCGGCCTCAGCATTCTCGCCACCCTCAAGGAAGAGCTGGGCGACC
TCGATCGCGTGAAGCGCATCGTCAAGGTTCTGGGCATGGTCAACGCCACG
TCGGAATACGGCAGCCAGCCGGAAGTGATCAACGGCTGCTCCGATCTCTT
CGTCGAAGTGTTCGGCGAGCGCGGCCGCCACGCGCGCTCCGCCGTCGGCA
TGGGCTCGCTGCCGCGCGGCATTCCGGTCGAGATCGAAGTGATCGTCGAA
GTGACGGATGGTCCGGCGCCCCGCGCCGTTGTCGCCAAGCCGGCGGCCAA
GCGCAAGGCCGCACCCAAGGCCAAGAAGGCTGCCAAGAAGAAGGCGGCGA
AGAAGAAAAAGCTCTAG
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