mRNA_P-wetherbeei_contig55203.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55203.1.1
Unique NamemRNA_P-wetherbeei_contig55203.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55203.1.1 vs. uniprot
Match: A0A848RUQ9_9MICO (Extracellular solute-binding protein n=1 Tax=Planctomonas sp. JC2975 TaxID=2729626 RepID=A0A848RUQ9_9MICO)

HSP 1 Score: 62.0 bits (149), Expect = 1.850e-9
Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   10 VAITNPAAGLVSPTNIERAGELSQLGTDSITAIVTGRADLAALDDYINQWKQGGGDTIRQEFEAAI-AAKAGS 225
            + + +P A L SPTN ++   LSQ  TD+    + GR+ LA L   ++ WK GGGD IR E++ A+  +K+GS
Sbjct:  477 IGVADPTANLFSPTNAQKGLTLSQAMTDATNNYIAGRSSLAQLKSAVSDWKSGGGDQIRSEYQKAMKGSKSGS 549          
BLAST of mRNA_P-wetherbeei_contig55203.1.1 vs. uniprot
Match: UPI001AE2EB30 (extracellular solute-binding protein n=1 Tax=Kribbella aluminosa TaxID=416017 RepID=UPI001AE2EB30)

HSP 1 Score: 60.8 bits (146), Expect = 4.720e-9
Identity = 29/67 (43.28%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   22 NPAAGLVSPTNIERAGELSQLGTDSITAIVTGRADLAALDDYINQWKQGGGDTIRQEFEAAIAAKAG 222
            +P   L S   + +AG L+QL  D +  IVTGR  L A+D++ +QW+  GGDTIR+E+E+A+ +  G
Sbjct:  485 DPTRQLYSRAALTQAGTLNQLNEDYLADIVTGRKPLTAIDEWRDQWRSRGGDTIRKEYESALRSLPG 551          
BLAST of mRNA_P-wetherbeei_contig55203.1.1 vs. uniprot
Match: UPI0004004962 (extracellular solute-binding protein n=1 Tax=Arthrobacter sp. 35W TaxID=1132441 RepID=UPI0004004962)

HSP 1 Score: 60.5 bits (145), Expect = 6.440e-9
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   16 ITNPAAGLVSPTNIERAGELSQLGTDSITAIVTGRADLAALDDYINQWKQGGGDTIRQEFEAAIAA 213
            + NP   L SPT+  +  +L Q  +D+ TA + GR D+A L   I  WK  GGDTIR E+E A+A+
Sbjct:  485 VANPCETLFSPTDSSQGSKLGQPVSDAATAFIAGRGDMAGLKAAIAAWKTSGGDTIRGEYEQALAS 550          
BLAST of mRNA_P-wetherbeei_contig55203.1.1 vs. uniprot
Match: A0A7R7HY89_9ACTN (Sugar ABC transporter substrate-binding protein n=2 Tax=Actinocatenispora TaxID=390988 RepID=A0A7R7HY89_9ACTN)

HSP 1 Score: 58.2 bits (139), Expect = 4.200e-8
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    7 RVAITNPAAGLVSPTNIERAGELSQLGTDSITAIVTGRADLAALDDYINQWKQGGGDTIRQEFEAAIA 210
            ++A  NP +G  S TN  +   L+QL +D +  +V GR  ++AL    + W+ GGGD IR EFE +IA
Sbjct:  475 KIAQPNPTSGHYSDTNTSKGPTLAQLYSDFVADVVQGRKPISALKQLRSDWRSGGGDKIRHEFEQSIA 542          
BLAST of mRNA_P-wetherbeei_contig55203.1.1 vs. uniprot
Match: UPI0004006374 (extracellular solute-binding protein n=1 Tax=Actinospica robiniae TaxID=304901 RepID=UPI0004006374)

HSP 1 Score: 58.2 bits (139), Expect = 4.210e-8
Identity = 28/71 (39.44%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   10 VAITNPAAGLVSPTNIERAGELSQLGTDSITAIVTGRADLAALDDYINQWKQGGGDTIRQEFEAAIAAKAG 222
            +A+ NP + L SPT  ++  EL    T +++ I++G+   +AL   +  W+ GGGDTIR E+E A+AA  G
Sbjct:  496 MAVGNPCSNLNSPTFNKKGLELQTQFTATVSEIISGKQPFSALAGAVKTWRSGGGDTIRSEYEKALAASKG 566          
BLAST of mRNA_P-wetherbeei_contig55203.1.1 vs. uniprot
Match: UPI00139178F9 (extracellular solute-binding protein n=1 Tax=Pseudactinotalea suaedae TaxID=1524924 RepID=UPI00139178F9)

HSP 1 Score: 57.4 bits (137), Expect = 7.850e-8
Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 1
Query:   16 ITNPAAGLVSPTNIERAGELSQLGTDSITAIVTGRADLAALDDYINQWKQGGGDTIRQEFEAAIA 210
            + NP  GL S T     G L+ +  D+  AI+ GR  +++ D+    W+ GGGDTIR E+E A A
Sbjct:  480 VRNPTVGLYSTTQGTNGGRLTTMANDAANAILLGREPVSSWDEVATDWRSGGGDTIRAEYEEAYA 544          
BLAST of mRNA_P-wetherbeei_contig55203.1.1 vs. uniprot
Match: UPI001B8196F6 (extracellular solute-binding protein n=1 Tax=Actinospica durhamensis TaxID=1508375 RepID=UPI001B8196F6)

HSP 1 Score: 56.6 bits (135), Expect = 1.470e-7
Identity = 27/71 (38.03%), Postives = 42/71 (59.15%), Query Frame = 1
Query:   10 VAITNPAAGLVSPTNIERAGELSQLGTDSITAIVTGRADLAALDDYINQWKQGGGDTIRQEFEAAIAAKAG 222
            +A+ NP + L SP   E+  EL    T ++  I+ G+  ++AL   +  W+ GGG+TIR +FE A+AA  G
Sbjct:  497 MAVGNPCSNLNSPAFNEKGSELQTQFTATVNEIIAGKQPVSALAGAVKAWQSGGGNTIRSQFEQALAASKG 567          
BLAST of mRNA_P-wetherbeei_contig55203.1.1 vs. uniprot
Match: A0A1B1ZH81_9PSEU (Uncharacterized protein n=1 Tax=Pseudonocardia sp. HH130630-07 TaxID=1690815 RepID=A0A1B1ZH81_9PSEU)

HSP 1 Score: 54.3 bits (129), Expect = 9.580e-7
Identity = 27/68 (39.71%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   13 AITNPAAGLVSPTNIERAGELSQLGTDSITAIVTGRADLAALDDYINQWKQGGGDTIRQEFEAAIAAK 216
            A+TN  +GL SPT   +   L +   D+   I  GR  ++A D+ I  W++GGGD +R E+E A+AA+
Sbjct:  472 AVTNATSGLYSPTKSIKGKSLYKALDDTRNQIFLGRLPVSAWDEAIADWRRGGGDQMRAEYEQALAAR 539          
BLAST of mRNA_P-wetherbeei_contig55203.1.1 vs. uniprot
Match: A0A1Q5N4A8_9ACTN (Uncharacterized protein n=12 Tax=Streptomyces TaxID=1883 RepID=A0A1Q5N4A8_9ACTN)

HSP 1 Score: 54.3 bits (129), Expect = 9.580e-7
Identity = 24/70 (34.29%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    7 RVAITNPAAGLVSPTNIERAGELSQLGTDSITAIVTGRADLAALDDYINQWKQGGGDTIRQEFEAAIAAK 216
            +++ TNP +G  S T+  ++  L+    D    I+ GR  ++A  + + +W+ GGGD +R EFEA++A K
Sbjct:  477 KISQTNPTSGHFSDTSTSKSPSLTTAMADCQKDIIAGRKPISAYKEQLREWRSGGGDKMRAEFEASLAGK 546          
BLAST of mRNA_P-wetherbeei_contig55203.1.1 vs. uniprot
Match: A0A7W3JA95_9MICO (Putative aldouronate transport system substrate-binding protein n=3 Tax=Promicromonospora TaxID=43676 RepID=A0A7W3JA95_9MICO)

HSP 1 Score: 53.9 bits (128), Expect = 1.310e-6
Identity = 26/70 (37.14%), Postives = 40/70 (57.14%), Query Frame = 1
Query:   13 AITNPAAGLVSPTNIERAGELSQLGTDSITAIVTGRADLAALDDYINQWKQGGGDTIRQEFEAAIAAKAG 222
            A+ NP  GL S T   + G+L +    + + I+ GR  + A  D  + W +GGGDTIR E++ A+A + G
Sbjct:  474 AVANPVQGLFSDTASRKGGQLGEKLVSTESDIMAGRKPVTAWADAASAWAKGGGDTIRDEYQKALAERQG 543          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55203.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A848RUQ9_9MICO1.850e-941.10Extracellular solute-binding protein n=1 Tax=Planc... [more]
UPI001AE2EB304.720e-943.28extracellular solute-binding protein n=1 Tax=Kribb... [more]
UPI00040049626.440e-943.94extracellular solute-binding protein n=1 Tax=Arthr... [more]
A0A7R7HY89_9ACTN4.200e-841.18Sugar ABC transporter substrate-binding protein n=... [more]
UPI00040063744.210e-839.44extracellular solute-binding protein n=1 Tax=Actin... [more]
UPI00139178F97.850e-840.00extracellular solute-binding protein n=1 Tax=Pseud... [more]
UPI001B8196F61.470e-738.03extracellular solute-binding protein n=1 Tax=Actin... [more]
A0A1B1ZH81_9PSEU9.580e-739.71Uncharacterized protein n=1 Tax=Pseudonocardia sp.... [more]
A0A1Q5N4A8_9ACTN9.580e-734.29Uncharacterized protein n=12 Tax=Streptomyces TaxI... [more]
A0A7W3JA95_9MICO1.310e-637.14Putative aldouronate transport system substrate-bi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55203contigP-wetherbeei_contig55203:83..310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1115632.JAFW01000001_gene1123
PFAMsSBP_bac_8
Model size228
Max annot lvl201174|Actinobacteria
KEGG koko:K17318
KEGG TC3.A.1.1.29,3.A.1.1.9
KEGG Pathwayko02010,map02010
KEGG ModuleM00603
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.73e-10
EggNOG OGsCOG1653@1|root,COG1653@2|Bacteria,2GN8J@201174|Actinobacteria,1WB1Q@1268|Micrococcaceae
DescriptionBacterial extracellular solute-binding protein
Cds size228
COG categoryG
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186823.3979187-CDS-P-wetherbeei_contig55203:82..3101683186823.3979187-CDS-P-wetherbeei_contig55203:82..310Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55203 83..310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55203.1.1prot_P-wetherbeei_contig55203.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55203 83..310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55203.1.1

>prot_P-wetherbeei_contig55203.1.1 ID=prot_P-wetherbeei_contig55203.1.1|Name=mRNA_P-wetherbeei_contig55203.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp
MARVAITNPAAGLVSPTNIERAGELSQLGTDSITAIVTGRADLAALDDYI
NQWKQGGGDTIRQEFEAAIAAKAGS*
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mRNA from alignment at P-wetherbeei_contig55203:83..310+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55203.1.1 ID=mRNA_P-wetherbeei_contig55203.1.1|Name=mRNA_P-wetherbeei_contig55203.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig55203:83..310+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGCGTCGCGATCACGAACCCGGCGGCCGGGCTCGTCTCGCCGAC GAATATCGAGCGCGCGGGCGAGCTGAGCCAGCTTGGGACGGACAGCATCA CCGCGATCGTGACGGGCCGCGCCGATCTGGCTGCGCTCGACGACTACATC AACCAGTGGAAGCAGGGTGGCGGCGATACGATCCGCCAGGAATTCGAAGC GGCGATCGCGGCGAAGGCCGGCTCCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55203:83..310+

>mRNA_P-wetherbeei_contig55203.1.1 ID=mRNA_P-wetherbeei_contig55203.1.1|Name=mRNA_P-wetherbeei_contig55203.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig55203:83..310+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGCGTCGCGATCACGAACCCGGCGGCCGGGCTCGTCTCGCCGAC
GAATATCGAGCGCGCGGGCGAGCTGAGCCAGCTTGGGACGGACAGCATCA
CCGCGATCGTGACGGGCCGCGCCGATCTGGCTGCGCTCGACGACTACATC
AACCAGTGGAAGCAGGGTGGCGGCGATACGATCCGCCAGGAATTCGAAGC
GGCGATCGCGGCGAAGGCCGGCTCCTGA
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