mRNA_P-wetherbeei_contig55170.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55170.1.1
Unique NamemRNA_P-wetherbeei_contig55170.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55170.1.1 vs. uniprot
Match: A0A4D9CYW2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYW2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.730e-10
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:    1 VALPFDGVKTVMQTA----EGAAAGDSTLAAAARMLRDGGVAALYRGWPVALGRGIPGAALTLTTYDYVMRWL 207
            VALPFD VK+VMQ A    EG   G   +    R++R+GG+  L+RGW  A GR +PG+A TL T+D V  WL
Sbjct:  179 VALPFDTVKSVMQVAGVGREGRREGMGQVIE--RLVREGGLRRLFRGWQGAFGRAVPGSAATLATFDVVKDWL 249
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BLAST of mRNA_P-wetherbeei_contig55170.1.1 vs. uniprot
Match: A0A6H5L227_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L227_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 6.560e-9
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:    1 VALPFDGVKTVMQTA-----EGAAAGDSTLAAAARMLRDGGVAALYRGWPVALGRGIPGAALTLTTYDYVMRWL 207
            VALP D  KTV+Q A     E    G +TL+   R++R+GG+  LY GWPVA GRGIPGAA+ L T+ +  + L
Sbjct:  261 VALPLDMTKTVIQAAGRKRGEVVPGGVATLS---RLVREGGLRNLYMGWPVAFGRGIPGAAIMLATHTFASQKL 331
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BLAST of mRNA_P-wetherbeei_contig55170.1.1 vs. uniprot
Match: A0A662XR70_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XR70_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.440e-8
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 1 
Query:    1 VALPFDGVKTVMQTAEGAAAGDSTLAAAARMLRDGGVAALYRGWPVALGRGIPGAALTLTTYDYVMRWLD 210
            VALPFD VK+++Q           +++  R++++GGVA L+RGW  A  RG+P AA+T  ++D   + LD
Sbjct:  240 VALPFDTVKSLIQADGREGKYTGLISSTTRLVQEGGVAQLFRGWQAAFSRGVPSAAITFWSFDRASKLLD 309
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BLAST of mRNA_P-wetherbeei_contig55170.1.1 vs. uniprot
Match: A0A662X2E1_9STRA (MaoC-like domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X2E1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 6.250e-8
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    1 VALPFDGVKTVMQTAEGAAAGDSTLAAAARMLRDGGVAALYRGWPVALGRGIPGAALTLTTYDYVMRWLD 210
            VALPFD VK+++Q           +++  R++R+GGV  L+RGW  A  RG+P AA+T  ++D   + LD
Sbjct:  549 VALPFDTVKSLIQADGREGKYTGLISSTTRLVREGGVVQLFRGWQAAFSRGVPSAAITFWSFDRASKLLD 618
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BLAST of mRNA_P-wetherbeei_contig55170.1.1 vs. uniprot
Match: R1DZ96_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DZ96_EMIHU)

HSP 1 Score: 54.7 bits (130), Expect = 9.350e-8
Identity = 31/69 (44.93%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:    1 VALPFDGVKTVMQTAEGAAAGDSTLAAAARMLRDGGVAALYRGWPVALGRGIPGAALTLTTYDYVMRWL 207
            VALP D +K+ +Q+     +   +  AA   +   GVA+LYRGW VA GRGIPGAA+TLT +   + W+
Sbjct:   43 VALPLDCIKSRIQSQPLETSPRRSWLAALHSID--GVASLYRGWQVAFGRGIPGAAITLTVHHRALEWI 109
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55170.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A4D9CYW2_9STRA5.730e-1049.32Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6H5L227_9PHAE6.560e-948.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A662XR70_9STRA5.440e-840.00Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662X2E1_9STRA6.250e-840.00MaoC-like domain-containing protein n=1 Tax=Nothop... [more]
R1DZ96_EMIHU9.350e-844.93Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55170contigP-wetherbeei_contig55170:43..276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FT39
PFAMsMito_carr
Model size234
Max annot lvl2759|Eukaryota
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.3e-09
EggNOG OGsKOG0758@1|root,KOG0758@2759|Eukaryota
Descriptionmitochondrial transport
Cds size234
COG categoryU
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.916372-CDS-P-wetherbeei_contig55170:42..2761683186822.916372-CDS-P-wetherbeei_contig55170:42..276Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55170 43..276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55170.1.1prot_P-wetherbeei_contig55170.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55170 43..276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55170.1.1

>prot_P-wetherbeei_contig55170.1.1 ID=prot_P-wetherbeei_contig55170.1.1|Name=mRNA_P-wetherbeei_contig55170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
VALPFDGVKTVMQTAEGAAAGDSTLAAAARMLRDGGVAALYRGWPVALGR
GIPGAALTLTTYDYVMRWLDGGGQGGM*
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mRNA from alignment at P-wetherbeei_contig55170:43..276-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55170.1.1 ID=mRNA_P-wetherbeei_contig55170.1.1|Name=mRNA_P-wetherbeei_contig55170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig55170:43..276- (Phaeothamnion wetherbeei SAG_119_79)
GTCGCCCTGCCGTTCGACGGCGTCAAGACGGTCATGCAGACCGCTGAGGG
TGCCGCCGCCGGTGACAGCACGCTGGCGGCGGCGGCGCGGATGCTGCGGG
ACGGCGGCGTAGCAGCTCTTTACCGTGGCTGGCCGGTGGCGCTCGGCCGC
GGTATTCCAGGGGCGGCGCTGACCCTGACGACGTACGACTACGTCATGCG
CTGGTTGGACGGCGGCGGACAAGGGGGAATGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55170:43..276-

>mRNA_P-wetherbeei_contig55170.1.1 ID=mRNA_P-wetherbeei_contig55170.1.1|Name=mRNA_P-wetherbeei_contig55170.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig55170:43..276- (Phaeothamnion wetherbeei SAG_119_79)
GTCGCCCTGCCGTTCGACGGCGTCAAGACGGTCATGCAGACCGCTGAGGG
TGCCGCCGCCGGTGACAGCACGCTGGCGGCGGCGGCGCGGATGCTGCGGG
ACGGCGGCGTAGCAGCTCTTTACCGTGGCTGGCCGGTGGCGCTCGGCCGC
GGTATTCCAGGGGCGGCGCTGACCCTGACGACGTACGACTACGTCATGCG
CTGGTTGGACGGCGGCGGACAAGGGGGAATGTGA
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