mRNA_P-wetherbeei_contig55168.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55168.1.1
Unique NamemRNA_P-wetherbeei_contig55168.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55168.1.1 vs. uniprot
Match: A0A6L5FP21_9HYPH (Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FP21_9HYPH)

HSP 1 Score: 250 bits (639), Expect = 1.230e-81
Identity = 112/159 (70.44%), Postives = 130/159 (81.76%), Query Frame = 1
Query:   13 KLADYQDKYKHVRFRREDGILEMTVHTNGGPLRWGREPHGELVQVFLDIGRDRENHCVIMTGAGAEFSGPAPNPEANMSYHAMGPDEWGELGWEAKHLLTNLLLIDVPMIAAVNGPAVRHAELPILCDIVLAAETATFQDSAHFVNGLVPGDGVHVAFP 489
            KL DY +KYK +R RREDGILEMT+HT+GG LRWGR PH EL + FL++GRDR+N  +I+TG G EFSGPAP+ E N   H M PDEWGELGWEAK    NLL I+VPMI+AVNGPA+RHAELP++CDIVLA+E A FQDSAHFV GLVPGDGVH+ FP
Sbjct:   11 KLDDYANKYKTIRMRREDGILEMTLHTDGGSLRWGRLPHAELEEAFLNVGRDRDNKVIILTGTGEEFSGPAPDSETNRKLHKMTPDEWGELGWEAKGFHANLLAIEVPMISAVNGPALRHAELPVMCDIVLASENAAFQDSAHFVGGLVPGDGVHIVFP 169          
BLAST of mRNA_P-wetherbeei_contig55168.1.1 vs. uniprot
Match: A0A1F2U243_9BACT (Crotonase n=1 Tax=Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21 TaxID=1797191 RepID=A0A1F2U243_9BACT)

HSP 1 Score: 223 bits (569), Expect = 3.920e-71
Identity = 99/160 (61.88%), Postives = 122/160 (76.25%), Query Frame = 1
Query:   10 LKLADYQDKYKHVRFRREDGILEMTVHTNGGPLRWGREPHGELVQVFLDIGRDRENHCVIMTGAGAEFSGPAPNPEANMSYHAMGPDEWGELGWEAKHLLTNLLLIDVPMIAAVNGPAVRHAELPILCDIVLAAETATFQDSAHFVNGLVPGDGVHVAFP 489
            +   DY + +K +R RREDGILEMT+HT G  LRWG   H +LVQ FLD+ RDR+N  VI+TGAG EF+GP   P+A  +   +  D W +LGWE+KHL+ N+L IDVP+I A+NGPA+RHAELP+LCDIVLA+ETA FQDSAHF  GL+PGDGVHV FP
Sbjct:    1 MAFTDYSETFKTIRMRREDGILEMTLHTEGDSLRWGPAAHSDLVQAFLDVSRDRDNLLVILTGAGDEFTGPQIKPDATRAVAKLSTDAWSKLGWESKHLIMNMLDIDVPVICALNGPALRHAELPLLCDIVLASETAAFQDSAHFAGGLIPGDGVHVVFP 160          
BLAST of mRNA_P-wetherbeei_contig55168.1.1 vs. uniprot
Match: UPI00080FA20F (enoyl-CoA hydratase/isomerase family protein n=1 Tax=Agrobacterium sp. 13-626 TaxID=1841652 RepID=UPI00080FA20F)

HSP 1 Score: 220 bits (560), Expect = 1.370e-69
Identity = 102/155 (65.81%), Postives = 120/155 (77.42%), Query Frame = 1
Query:   25 YQDKYKHVRFRREDGILEMTVHTNGGPLRWGREPHGELVQVFLDIGRDRENHCVIMTGAGAEFSGP-APNPEANMSYHAMGPDEWGELGWEAKHLLTNLLLIDVPMIAAVNGPAVRHAELPILCDIVLAAETATFQDSAHFVNGLVPGDGVHVAF 486
            Y DKY+ ++ RREDGILE+ +HTN GPL+WGR PH EL + FL+IGRDREN  VI+TG G +FSGP   +   N +YH    ++W ELGWE+K LL NLL I+VPMIAAVNGPAVRH ELPI+CDIVLAA  A FQDSAH+  GLVPGDGVHV F
Sbjct:   18 YADKYQSIKMRREDGILEVRLHTNDGPLKWGRLPHAELEEAFLNIGRDRENQVVILTGTGDQFSGPRVEDSSTNRAYHRHSAEDWAELGWESKGLLNNLLGIEVPMIAAVNGPAVRHPELPIMCDIVLAAPEAEFQDSAHYQGGLVPGDGVHVVF 172          
BLAST of mRNA_P-wetherbeei_contig55168.1.1 vs. uniprot
Match: UPI0016039662 (enoyl-CoA hydratase/isomerase family protein n=1 Tax=Variovorax sp. UMC13 TaxID=1862326 RepID=UPI0016039662)

HSP 1 Score: 219 bits (557), Expect = 2.940e-69
Identity = 101/159 (63.52%), Postives = 117/159 (73.58%), Query Frame = 1
Query:   13 KLADYQDKYKHVRFRREDGILEMTVHTNGGPLRWGREPHGELVQVFLDIGRDRENHCVIMTGAGAEFSGPAPNPEANMSYHAMGPDEWGELGWEAKHLLTNLLLIDVPMIAAVNGPAVRHAELPILCDIVLAAETATFQDSAHFVNGLVPGDGVHVAFP 489
            +  DY  +Y+ +R RREDGILEM +HT GGPLRW  + HGEL Q FLD+GRD++N  VI+TG G  FSGPA  P  +     M P  W  L WE K LL NLL I+VPMIAAVNGPAVRHAE+P+LCDIVLA+E A FQDSAHF  GLVPGDG+HV FP
Sbjct:    3 RFEDYATRYRFIRMRREDGILEMMLHTEGGPLRWNLQAHGELEQAFLDVGRDKDNEVVILTGCGDAFSGPAVQPGGHRLSGTMTPTTWDHLYWEGKRLLHNLLDIEVPMIAAVNGPAVRHAEIPVLCDIVLASEQAAFQDSAHFNGGLVPGDGMHVVFP 161          
BLAST of mRNA_P-wetherbeei_contig55168.1.1 vs. uniprot
Match: A0A7C7MGR2_9CHLR (Enoyl-CoA hydratase/isomerase family protein n=3 Tax=Chloroflexi TaxID=200795 RepID=A0A7C7MGR2_9CHLR)

HSP 1 Score: 209 bits (532), Expect = 2.060e-65
Identity = 97/158 (61.39%), Postives = 118/158 (74.68%), Query Frame = 1
Query:   16 LADYQDKYKHVRFRREDGILEMTVHTNGGPLRWGREPHGELVQVFLDIGRDRENHCVIMTGAGAEFSGPAPNPEANMSYHAMGPDEWGELGWEAKHLLTNLLLIDVPMIAAVNGPAVRHAELPILCDIVLAAETATFQDSAHFVNGLVPGDGVHVAFP 489
            L +Y +KY+ VR  R DGIL++T+HTNGG L+WG  PH EL QVF DIG D EN  VIMTGAG  F+GP   P    S     P +W +  WE KHLL NLL I+VPMI+A+NGPA+RH+ELP+LCDIVLA+E ATFQDS HF+NGL+PGDG+HV +P
Sbjct:    4 LDEYANKYQSVRMERRDGILQITLHTNGGSLQWGGTPHEELPQVFHDIGSDPENRVVIMTGAGDAFTGP---PGTRESRPRRSPSQWDKTYWEGKHLLMNLLDIEVPMISAINGPALRHSELPLLCDIVLASENATFQDSGHFINGLIPGDGMHVIYP 158          
BLAST of mRNA_P-wetherbeei_contig55168.1.1 vs. uniprot
Match: A0A0S8C7Q0_9PROT (Crotonase n=1 Tax=Betaproteobacteria bacterium SG8_41 TaxID=1703391 RepID=A0A0S8C7Q0_9PROT)

HSP 1 Score: 208 bits (529), Expect = 4.720e-65
Identity = 95/159 (59.75%), Postives = 118/159 (74.21%), Query Frame = 1
Query:   13 KLADYQDKYKHVRFRREDGILEMTVHTNGGPLRWGREPHGELVQVFLDIGRDRENHCVIMTGAGAEFSGPAPNPEANMSYHAMGPDEWGELGWEAKHLLTNLLLIDVPMIAAVNGPAVRHAELPILCDIVLAAETATFQDSAHFVNGLVPGDGVHVAFP 489
            KL DY  K++ +RFRRE+GILEMT+HTNGG  R+G  PH E+ Q FLD+ RD +N  +I+TG G EFSGPA       +   + P++W +LG EAK    N+L I+VPMIAAVNGPA+RH E+P++CDIVLAAE A FQDSAHF  G+VPGDGVHV FP
Sbjct:    3 KLDDYAQKFETIRFRREEGILEMTLHTNGGSQRFGPVPHAEMEQAFLDVSRDPDNQVIILTGTGEEFSGPAVASSVGRAVPKLTPEQWMKLGSEAKRFTMNMLAIEVPMIAAVNGPALRHPEVPLMCDIVLAAEQAAFQDSAHFRGGMVPGDGVHVVFP 161          
BLAST of mRNA_P-wetherbeei_contig55168.1.1 vs. uniprot
Match: A0A0S8F2V1_9DELT (Crotonase n=1 Tax=Myxococcales bacterium SG8_38_1 TaxID=1703408 RepID=A0A0S8F2V1_9DELT)

HSP 1 Score: 207 bits (528), Expect = 8.570e-65
Identity = 98/161 (60.87%), Postives = 116/161 (72.05%), Query Frame = 1
Query:   22 DYQDKYKHVRFRREDGILEMTVHTNGGPLRWGREPHGELVQVFLDIGRDRENHCVIMTGAGAEFSGPAPNPEANMSYH----AMGPDEWGELG-WEAKHLLTNLLLIDVPMIAAVNGPAVRHAELPILCDIVLAAETATFQDSAHFVNGLVPGDGVHVAFP 489
            +Y  KY  VR RREDGILEM  HTNGGPLRW +  HG+L   FLD GRDR+N  +I+TG G E++GPA  P     +H     +  + W +   WE KHLL NLL I+VPMIAA+NGPAVRHAE+P+LCDIVLA+E AT QDSAHF  GLVPGDGVH+ FP
Sbjct:    6 EYSTKYSSVRMRREDGILEMQFHTNGGPLRWSKHAHGDLECAFLDAGRDRDNQVIIITGTGDEYAGPAVQPSGAGGHHNPREPLTAEGWDKTWYWEGKHLLMNLLNIEVPMIAAINGPAVRHAEIPLLCDIVLASEQATIQDSAHFNGGLVPGDGVHIVFP 166          
BLAST of mRNA_P-wetherbeei_contig55168.1.1 vs. uniprot
Match: A0A1F4DJD5_9PROT (Crotonase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 TaxID=1797497 RepID=A0A1F4DJD5_9PROT)

HSP 1 Score: 206 bits (523), Expect = 3.840e-64
Identity = 94/159 (59.12%), Postives = 117/159 (73.58%), Query Frame = 1
Query:   13 KLADYQDKYKHVRFRREDGILEMTVHTNGGPLRWGREPHGELVQVFLDIGRDRENHCVIMTGAGAEFSGPAPNPEANMSYHAMGPDEWGELGWEAKHLLTNLLLIDVPMIAAVNGPAVRHAELPILCDIVLAAETATFQDSAHFVNGLVPGDGVHVAFP 489
            K  DY  K++++RFRREDGILEMT+HT G  LR G  PH E+ + FLDIG D EN  +I+TG GAEF+GP   P    S   + P++W  LG EAK    N+L I+VPMIAAVNGP++RH ELP++CDIVLAAE A FQDSAHF +G+VPGDG++V FP
Sbjct:    3 KFEDYGQKFENIRFRREDGILEMTLHTKGDSLRMGPVPHAEMERAFLDIGHDPENQVIILTGTGAEFTGPEITPSTGRSVPKLTPEQWMRLGSEAKRFTMNMLSIEVPMIAAVNGPSLRHTELPLMCDIVLAAEGAAFQDSAHFRSGMVPGDGINVIFP 161          
BLAST of mRNA_P-wetherbeei_contig55168.1.1 vs. uniprot
Match: A0A1F4FVS4_9PROT (Crotonase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4FVS4_9PROT)

HSP 1 Score: 206 bits (523), Expect = 4.340e-64
Identity = 99/158 (62.66%), Postives = 115/158 (72.78%), Query Frame = 1
Query:   25 YQDKYKHVRFRREDGILEMTVHTNGGPLRWGREPHGELVQVFLDIGRDRENHCVIMTGAGAEFSGPAPNPEANMSYHAMGP---DEWGELGWEAKHLLTNLLLIDVPMIAAVNGPAVRHAELPILCDIVLAAETATFQDSAHFVNGLVPGDGVHVAFP 489
            Y  KY+ +  RREDGILEM  HT G PLRW   PH EL   FLD+GRDR+N  +I+TG G EFSGPA  P  +   HA  P   +EW  + WE KHLL NLL I+VPMI+A+NGPA+RHAE+P+LCDIVLAAE AT +DSAHF  GLVPGDGVHV FP
Sbjct:    7 YAAKYQTISMRREDGILEMRFHTGGKPLRWSLLPHRELENAFLDVGRDRDNELIILTGTGDEFSGPAVAPGGHN--HARKPVTAEEWDRIYWEGKHLLMNLLDIEVPMISAINGPALRHAEIPLLCDIVLAAEEATIRDSAHFSGGLVPGDGVHVVFP 162          
BLAST of mRNA_P-wetherbeei_contig55168.1.1 vs. uniprot
Match: A0A315CET7_9BURK (Crotonase n=1 Tax=Limnohabitans sp. MMS-10A-178 TaxID=1835767 RepID=A0A315CET7_9BURK)

HSP 1 Score: 204 bits (519), Expect = 2.040e-63
Identity = 96/161 (59.63%), Postives = 120/161 (74.53%), Query Frame = 1
Query:   10 LKLADYQDKYKHVRFRREDGILEMTVHTNGGPLRWGREPHGELVQVFLDIGRDRENHCVIMTGAGAEFSGPAPNPEA-NMSYHAMGPDEWGELGWEAKHLLTNLLLIDVPMIAAVNGPAVRHAELPILCDIVLAAETATFQDSAHFVNGLVPGDGVHVAFP 489
            LKL +Y +KY+ ++  R DGILE+ +HTNGGPL W   PHGEL + F +IG+D +N  +I+TG GA FSGPA  P   N   H +   EW ++ +E KHLL NLL I+VP+IAA+NGP +RHAE+P+L DIVLAA+TATFQDSAHF  GLVPGDGVHV FP
Sbjct:    2 LKLENYANKYQTIQMSRTDGILEVKLHTNGGPLHWSLLPHGELTRAFHEIGQDYDNEVIILTGTGAAFSGPALGPNGHNHVSHPVTAMEWDKIYFEGKHLLLNLLNIEVPIIAAINGPTLRHAEIPLLSDIVLAADTATFQDSAHFWGGLVPGDGVHVVFP 162          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55168.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L5FP21_9HYPH1.230e-8170.44Enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A1F2U243_9BACT3.920e-7161.88Crotonase n=1 Tax=Acidobacteria bacterium RIFCSPLO... [more]
UPI00080FA20F1.370e-6965.81enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
UPI00160396622.940e-6963.52enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
A0A7C7MGR2_9CHLR2.060e-6561.39Enoyl-CoA hydratase/isomerase family protein n=3 T... [more]
A0A0S8C7Q0_9PROT4.720e-6559.75Crotonase n=1 Tax=Betaproteobacteria bacterium SG8... [more]
A0A0S8F2V1_9DELT8.570e-6560.87Crotonase n=1 Tax=Myxococcales bacterium SG8_38_1 ... [more]
A0A1F4DJD5_9PROT3.840e-6459.12Crotonase n=1 Tax=Betaproteobacteria bacterium RIF... [more]
A0A1F4FVS4_9PROT4.340e-6462.66Crotonase n=1 Tax=Betaproteobacteria bacterium RIF... [more]
A0A315CET7_9BURK2.040e-6359.63Crotonase n=1 Tax=Limnohabitans sp. MMS-10A-178 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55168contigP-wetherbeei_contig55168:30..518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog266779.Meso_0481
PFAMsECH_1
Model size489
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K20765
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.53e-61
EggNOG OGsCOG1024@1|root,COG1024@2|Bacteria,1Q51H@1224|Proteobacteria,2U84X@28211|Alphaproteobacteria
EC3.7.1.18
DescriptionEnoyl-CoA hydratase/isomerase
Cds size489
COG categoryI
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.8128412-CDS-P-wetherbeei_contig55168:29..5181683186822.8128412-CDS-P-wetherbeei_contig55168:29..518Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55168 30..518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55168.1.1prot_P-wetherbeei_contig55168.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55168 30..518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55168.1.1

>prot_P-wetherbeei_contig55168.1.1 ID=prot_P-wetherbeei_contig55168.1.1|Name=mRNA_P-wetherbeei_contig55168.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
MSTLKLADYQDKYKHVRFRREDGILEMTVHTNGGPLRWGREPHGELVQVF
LDIGRDRENHCVIMTGAGAEFSGPAPNPEANMSYHAMGPDEWGELGWEAK
HLLTNLLLIDVPMIAAVNGPAVRHAELPILCDIVLAAETATFQDSAHFVN
GLVPGDGVHVAFP
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mRNA from alignment at P-wetherbeei_contig55168:30..518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55168.1.1 ID=mRNA_P-wetherbeei_contig55168.1.1|Name=mRNA_P-wetherbeei_contig55168.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig55168:30..518+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCACGCTGAAGCTCGCCGACTACCAGGACAAGTACAAGCACGTCCG GTTCCGTCGCGAAGATGGCATCCTGGAAATGACGGTTCACACCAACGGCG GGCCGCTGCGCTGGGGACGGGAGCCGCATGGCGAACTGGTCCAGGTTTTC CTGGATATCGGGCGCGACCGCGAAAACCACTGCGTGATCATGACAGGGGC GGGAGCGGAGTTTTCCGGGCCCGCACCCAATCCCGAGGCCAACATGAGCT ATCACGCGATGGGGCCGGATGAATGGGGCGAACTCGGCTGGGAGGCGAAG CACCTGCTGACGAACCTGCTGCTGATCGACGTCCCGATGATCGCGGCCGT CAATGGGCCGGCGGTCAGGCACGCAGAGCTGCCGATCCTGTGCGATATCG TTCTGGCAGCGGAGACGGCGACGTTCCAGGACAGCGCGCATTTCGTCAAC GGACTGGTACCCGGGGACGGCGTCCACGTTGCGTTTCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55168:30..518+

>mRNA_P-wetherbeei_contig55168.1.1 ID=mRNA_P-wetherbeei_contig55168.1.1|Name=mRNA_P-wetherbeei_contig55168.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig55168:30..518+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCACGCTGAAGCTCGCCGACTACCAGGACAAGTACAAGCACGTCCG
GTTCCGTCGCGAAGATGGCATCCTGGAAATGACGGTTCACACCAACGGCG
GGCCGCTGCGCTGGGGACGGGAGCCGCATGGCGAACTGGTCCAGGTTTTC
CTGGATATCGGGCGCGACCGCGAAAACCACTGCGTGATCATGACAGGGGC
GGGAGCGGAGTTTTCCGGGCCCGCACCCAATCCCGAGGCCAACATGAGCT
ATCACGCGATGGGGCCGGATGAATGGGGCGAACTCGGCTGGGAGGCGAAG
CACCTGCTGACGAACCTGCTGCTGATCGACGTCCCGATGATCGCGGCCGT
CAATGGGCCGGCGGTCAGGCACGCAGAGCTGCCGATCCTGTGCGATATCG
TTCTGGCAGCGGAGACGGCGACGTTCCAGGACAGCGCGCATTTCGTCAAC
GGACTGGTACCCGGGGACGGCGTCCACGTTGCGTTTCCC
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