mRNA_P-wetherbeei_contig55151.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55151.1.1
Unique NamemRNA_P-wetherbeei_contig55151.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55151.1.1 vs. uniprot
Match: A0A1Q4BCG7_9HYPH (Blue-light-activated histidine kinase n=1 Tax=Rhizobiales bacterium 62-17 TaxID=1895810 RepID=A0A1Q4BCG7_9HYPH)

HSP 1 Score: 236 bits (603), Expect = 1.800e-73
Identity = 119/172 (69.19%), Postives = 142/172 (82.56%), Query Frame = 1
Query:    7 DITHPGDIDANDGEMQDLIDGKISFFSKDKRYVHKDGEIVWVGLTVSLERDSLGEPAYFLEVVRDIEARKRAEEHQFFLMRELSHRSKNLLAVIQAMARQTARISDGT-DVFIERFTQRLHGLATSHDLLVHQNWRHVPLKDLLKQQLAPFVETDSGRLVLDGPDVAVTPEA 519
            D+T   D+ +++ +MQDL+DGKIS F+ DKR++ KDG  +WVG+TVSLERD+ G P YFL VVRDI A + AE+HQFFLMRELSHRSKNLLAVIQAMARQTAR S+   DVF++RF+QRL GLATSHDLLVHQNWRHV L DL++QQLAPFV+ DS RL + GP VAV PEA
Sbjct:  184 DLTFADDLYSDESQMQDLLDGKISSFALDKRFIRKDGSTIWVGITVSLERDNAGHPLYFLHVVRDISAHREAEQHQFFLMRELSHRSKNLLAVIQAMARQTARASNNDIDVFLDRFSQRLQGLATSHDLLVHQNWRHVLLVDLVRQQLAPFVDIDSDRLEVGGPMVAVIPEA 355          
BLAST of mRNA_P-wetherbeei_contig55151.1.1 vs. uniprot
Match: A0A1H4WWM1_9HYPH (Blue-light-activated histidine kinase n=2 Tax=Beijerinckia sp. 28-YEA-48 TaxID=1882748 RepID=A0A1H4WWM1_9HYPH)

HSP 1 Score: 238 bits (608), Expect = 1.980e-70
Identity = 118/171 (69.01%), Postives = 141/171 (82.46%), Query Frame = 1
Query:    7 DITHPGDIDANDGEMQDLIDGKISFFSKDKRYVHKDGEIVWVGLTVSLERDSLGEPAYFLEVVRDIEARKRAEEHQFFLMRELSHRSKNLLAVIQAMARQTARISDGTDVFIERFTQRLHGLATSHDLLVHQNWRHVPLKDLLKQQLAPFVETDSGRLVLDGPDVAVTPEA 519
            D+T   D+ A++ +M+DL+DGKI  F+ DKR++ KDG   WVG+TVSLERDS G+P YFL VVRDI A + AE+HQFFLMRELSHRSKNLLAVIQAMARQTAR+S   D F++RF+ RL GLATSHDLLVHQNW+HV L DL++QQLAPFV+ DSGRLV+ GP VAV PEA
Sbjct:  683 DLTFTDDLYADEDQMRDLLDGKIPSFALDKRFIRKDGSTTWVGITVSLERDSAGQPLYFLHVVRDISAHREAEQHQFFLMRELSHRSKNLLAVIQAMARQTARVSYDIDTFLDRFSLRLQGLATSHDLLVHQNWKHVLLTDLVQQQLAPFVDMDSGRLVVGGPMVAVIPEA 853          
BLAST of mRNA_P-wetherbeei_contig55151.1.1 vs. uniprot
Match: A0A2W2BK77_9HYPH (Blue-light-activated histidine kinase n=2 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2BK77_9HYPH)

HSP 1 Score: 138 bits (348), Expect = 3.260e-35
Identity = 79/170 (46.47%), Postives = 103/170 (60.59%), Query Frame = 1
Query:   10 ITHPGDIDANDGEMQDLIDGKISFFSKDKRYVHKDGEIVWVGLTVSLERDSLGEPAYFLEVVRDIEARKRAEEHQFFLMRELSHRSKNLLAVIQAMARQTARISDGTDVFIERFTQRLHGLATSHDLLVHQNWRHVPLKDLLKQQLAPFVETDSGRLVLDGPDVAVTPEA 519
            I HP D DAN  EM+ L+  ++ +F    R +HK G  VWV   V L RD  G P   + +V D+  RKR EE    LMRE++HRSKNLLAV+Q++ARQTA   D    F ERF+ RL GLA SHDLLV+  WR V L +L+  QLA F +    R+++ GP + +   A
Sbjct:  285 IVHPDDRDANLREMERLVRQEVPYFEIFNRSIHKTGRTVWVHKFVLLLRDRQGTPVSIVALVTDMTERKRQEEQIKLLMREVNHRSKNLLAVVQSVARQTASYGDPAR-FAERFSDRLQGLAASHDLLVNNAWRGVELGELVSSQLAHFKDLVGRRIMVAGPPLRINASA 453          
BLAST of mRNA_P-wetherbeei_contig55151.1.1 vs. uniprot
Match: A0A842HXM4_9SPHN (Histidine kinase n=1 Tax=Parasphingopyxis marina TaxID=2761622 RepID=A0A842HXM4_9SPHN)

HSP 1 Score: 129 bits (324), Expect = 3.750e-33
Identity = 67/171 (39.18%), Postives = 98/171 (57.31%), Query Frame = 1
Query:    7 DITHPGDIDANDGEMQDLIDGKISFFSKDKRYVHKDGEIVWVGLTVSLERDSLGEPAYFLEVVRDIEARKRAEEHQFFLMRELSHRSKNLLAVIQAMARQTARISDGTDVFIERFTQRLHGLATSHDLLVHQNWRHVPLKDLLKQQLAPFVETDSGRLVLDGPDVAVTPEA 519
            DITHP D+DA+  ++  LI G I  ++ +KRY HKDG ++W+ LTV L+RD  GEP + +  + DI  RK  EE    L+ EL+HR KN LA +QA+A  + R  +        FT RLH L+ +HDLL  + W    +  ++ + L  F   D  R  + GP + ++P A
Sbjct:   60 DITHPDDLDADLEQLDALIKGDIPAYTMEKRYFHKDGGLIWINLTVGLQRDEDGEPLFCISAIEDITERKANEERLRVLVDELNHRVKNTLATVQAIAHMSFRKDEPIADARAEFTSRLHALSGAHDLLTEEKWMGADIMSVVDRALRAFRLADETRFHVAGPRIRLSPRA 230          
BLAST of mRNA_P-wetherbeei_contig55151.1.1 vs. uniprot
Match: UPI0008BBFF09 (PAS domain S-box-containing protein n=2 Tax=Marinovum algicola TaxID=42444 RepID=UPI0008BBFF09)

HSP 1 Score: 133 bits (335), Expect = 4.170e-33
Identity = 72/171 (42.11%), Postives = 106/171 (61.99%), Query Frame = 1
Query:    7 DITHPGDIDANDGEMQDLIDGKISFFSKDKRYVHKDGEIVWVGLTVSLERDSLGEPAYFLEVVRDIEARKRAEEHQFFLMRELSHRSKNLLAVIQAMARQTARISDGTDVFIERFTQRLHGLATSHDLLVHQNWRHVPLKDLLKQQLAPFVETDSGRLVLDGPDVAVTPEA 519
            D THP D+  N      L  G    +  +KRY+H+DG +VW   TVS  R S G  AY +++++DI AR+R++E +  LMRE++HRSKNLL+++Q +ARQTA  S   + F++ F +RL  LA + DLLV+  W+ + L DL+  QL  F  T   R+++ GP V + P A
Sbjct:  397 DFTHPDDLTLNHEAWSRLASGAADEYDLEKRYLHRDGAVVWGHTTVSCVRHSDGRIAYLIKIIQDITARRRSDEARQMLMREVNHRSKNLLSIVQVIARQTAAHSP--EGFVKIFGERLQALAANQDLLVNNEWQRINLSDLVTSQLRHF-GTIGSRVMISGPPVVLPPAA 564          
BLAST of mRNA_P-wetherbeei_contig55151.1.1 vs. uniprot
Match: A0A1D2TS83_9CAUL (Histidine kinase n=1 Tax=Phenylobacterium sp. SCN 69-14 TaxID=1660128 RepID=A0A1D2TS83_9CAUL)

HSP 1 Score: 131 bits (329), Expect = 7.380e-33
Identity = 74/175 (42.29%), Postives = 104/175 (59.43%), Query Frame = 1
Query:   10 ITHPGDIDANDGEMQDLIDGKISFFSKDKRYVHKDGEIVWVGLTVSLERDSLGEPAYFLEVVRDIEARKRAEEHQF-------FLMRELSHRSKNLLAVIQAMARQTARISDGTDVFIERFTQRLHGLATSHDLLVHQNWRHVPLKDLLKQQLAPFVETDSGRLVLDGPDVAVTP 513
            ITHP DI+ N    + L+ G+I  ++ +KRYV K GE++W+ LTVSL RD  G P YF+ +V DI ARKRAE  Q         L+ EL+HR KN LA +Q+MA QT R +       E+   RL GL+ +HD+L  + W    L+++ ++ LAPF  T  G + + GP V + P
Sbjct:  188 ITHPDDIEGNLAYTRALLAGEIDTYALEKRYVTKLGEVLWISLTVSLVRDGAGRPDYFVSIVEDIGARKRAEAEQARHQDQMRLLVNELNHRVKNTLATVQSMASQTLRGATDPAQVYEKLEARLLGLSQAHDVLTRERWHGADLREVAERALAPFDSTP-GTVRVSGPKVWLPP 361          
BLAST of mRNA_P-wetherbeei_contig55151.1.1 vs. uniprot
Match: V9VVQ2_9RHOB (Histidine kinase n=2 Tax=Leisingera methylohalidivorans TaxID=133924 RepID=V9VVQ2_9RHOB)

HSP 1 Score: 132 bits (332), Expect = 1.010e-32
Identity = 74/166 (44.58%), Postives = 102/166 (61.45%), Query Frame = 1
Query:   10 ITHPGDIDANDGEMQDLIDGKISFFSKDKRYVHKDGEIVWVGLTVSLERDSLGEPAYFLEVVRDIEARKRAEEHQFFLMRELSHRSKNLLAVIQAMARQTARISDGTDVFIERFTQRLHGLATSHDLLVHQNWRHVPLKDLLKQQLAPFVETDSGRLVLDGPDVAV 507
            + HP D   + G++  L+ G I+    + R++  DG  VW  ++V+L+R+   EPAY + V+RD+  RK A+EHQ  LM ELSHRSKN LAV+ A+ARQTAR +     F     QRL+GLA S DLLV Q+W    L+DL+ +QL  F      RL  DGP+V +
Sbjct:  385 LLHPEDRPVDPGKVDRLLSGTIANLQYEARHLCADGSDVWWDVSVALQRNGESEPAYLIYVIRDVSDRKAAQEHQNILMHELSHRSKNQLAVVGAIARQTARTAGSMQDFRALLEQRLNGLAVSIDLLVKQSWTGASLRDLIDKQLEAFAGGGE-RLERDGPEVVL 549          
BLAST of mRNA_P-wetherbeei_contig55151.1.1 vs. uniprot
Match: A0A7Y0BM35_9SPHN (Histidine kinase n=1 Tax=Novosphingobium olei TaxID=2728851 RepID=A0A7Y0BM35_9SPHN)

HSP 1 Score: 128 bits (321), Expect = 1.520e-32
Identity = 66/171 (38.60%), Postives = 104/171 (60.82%), Query Frame = 1
Query:    7 DITHPGDIDANDGEMQDLIDGKISFFSKDKRYVHKDGEIVWVGLTVSLERDSLGEPAYFLEVVRDIEARKRAEEHQFFLMRELSHRSKNLLAVIQAMARQTARISDGTDVFIERFTQRLHGLATSHDLLVHQNWRHVPLKDLLKQQLAPFVETDSGRLVLDGPDVAVTPEA 519
            DITHP D+DA+ G +QDL++G +  ++ +KRY+  DG  VW  L+VSL RD+ G P  F+ V+ DI  RK A+E    L+ E  HR +NL+AV+ A+   +A+++          +QRL G+A SHDLL+ +     PL  L+++QL  F    + R++++G  + + P A
Sbjct:   83 DITHPDDLDADLGYVQDLLNGALDVYTMEKRYIRADGTTVWTELSVSLLRDASGAPLNFISVISDIHKRKEAQEQVQLLLDESGHRVRNLIAVVGAIVSGSAKVASSAAELERSISQRLAGIAASHDLLLGKATAGGPLDKLIERQLEIFAHGSADRVLIEGEHLELLPSA 253          
BLAST of mRNA_P-wetherbeei_contig55151.1.1 vs. uniprot
Match: UPI0006787E20 (PAS domain-containing protein n=1 Tax=Bradyrhizobium sp. LTSPM299 TaxID=1619233 RepID=UPI0006787E20)

HSP 1 Score: 130 bits (328), Expect = 1.530e-32
Identity = 73/159 (45.91%), Postives = 101/159 (63.52%), Query Frame = 1
Query:   46 EMQDLIDGKISFFSKDKRYVHKDGEIVWV-GLTVSLERDSLGEPAYFLEVVRDIEARKRAEEHQFFLMRELSHRSKNLLAVIQAMARQTARISDGTDVFIERFTQRLHGLATSHDLLVHQNWRHVPLKDLLKQQLAPFVETDSGRLVLDGPDVAVTPEA 519
            +  +L D + SF S+  R V  DG  +W+ G    + R   G+    + +V D+  RK AE+H  FLM ELSHRSKNLLAVIQ+++R+TAR +   + F  RF +RL GLA SHD+L+  +W+  PL DL++QQL PF +  S R+ L GPD+ VT EA
Sbjct:  254 KFHELADEQDSFTSE-YRVVWADGTTLWLRGHGQVVARTPDGKAHRLVSIVTDVTERKAAEDHAQFLMHELSHRSKNLLAVIQSISRRTARTTTTMEEFESRFGRRLQGLAASHDVLIRNSWQGAPLADLMRQQLVPFTDIQSSRVKLAGPDIVVTAEA 411          
BLAST of mRNA_P-wetherbeei_contig55151.1.1 vs. uniprot
Match: UPI0015A40B21 (PAS domain S-box protein n=1 Tax=Parasphingopyxis algicola TaxID=2026624 RepID=UPI0015A40B21)

HSP 1 Score: 127 bits (319), Expect = 1.970e-32
Identity = 63/162 (38.89%), Postives = 99/162 (61.11%), Query Frame = 1
Query:    7 DITHPGDIDANDGEMQDLIDGKISFFSKDKRYVHKDGEIVWVGLTVSLERDSLGEPAYFLEVVRDIEARKRAEEHQFFLMRELSHRSKNLLAVIQAMARQTARISDGTDVFIERFTQRLHGLATSHDLLVHQNWRHVPLKDLLKQQLAPFVETDSGRLVLDG 492
            DITHP D++ + G++Q LI G+I  +  +KRY  KDGE++W+ LTV L+R   G P + + ++ DI  RK  EEH   L+ EL+HR KN LA +QA+A  + R  +      + FT RL  L+++HD+L  + W     + ++++ L PF   ++ RL L+G
Sbjct:   60 DITHPDDLETDLGQLQALIRGEIPHYQMEKRYFRKDGELIWINLTVGLQRGPDGAPDFCISLIEDITRRKADEEHLRILVDELNHRVKNTLATVQAVAHMSFRKDEPVAEAKKDFTGRLQALSSAHDILTEEKWTGADFRQVVRRALRPFNLDNADRLSLEG 221          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55151.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q4BCG7_9HYPH1.800e-7369.19Blue-light-activated histidine kinase n=1 Tax=Rhiz... [more]
A0A1H4WWM1_9HYPH1.980e-7069.01Blue-light-activated histidine kinase n=2 Tax=Beij... [more]
A0A2W2BK77_9HYPH3.260e-3546.47Blue-light-activated histidine kinase n=2 Tax=Aest... [more]
A0A842HXM4_9SPHN3.750e-3339.18Histidine kinase n=1 Tax=Parasphingopyxis marina T... [more]
UPI0008BBFF094.170e-3342.11PAS domain S-box-containing protein n=2 Tax=Marino... [more]
A0A1D2TS83_9CAUL7.380e-3342.29Histidine kinase n=1 Tax=Phenylobacterium sp. SCN ... [more]
V9VVQ2_9RHOB1.010e-3244.58Histidine kinase n=2 Tax=Leisingera methylohalidiv... [more]
A0A7Y0BM35_9SPHN1.520e-3238.60Histidine kinase n=1 Tax=Novosphingobium olei TaxI... [more]
UPI0006787E201.530e-3245.91PAS domain-containing protein n=1 Tax=Bradyrhizobi... [more]
UPI0015A40B211.970e-3238.89PAS domain S-box protein n=1 Tax=Parasphingopyxis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55151contigP-wetherbeei_contig55151:6..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog426117.M446_0827
PFAMsGAF,HATPase_c,HWE_HK,HisKA,HisKA_2,PAS,PAS_3,PAS_4,PAS_9,Response_reg
Model size519
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.3e-33
EggNOG OGsCOG0642@1|root,COG3920@1|root,COG2205@2|Bacteria,COG3920@2|Bacteria,1NRP8@1224|Proteobacteria
DescriptionHistidine kinase
Cds size519
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.6916862-CDS-P-wetherbeei_contig55151:5..5241683186822.6916862-CDS-P-wetherbeei_contig55151:5..524Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55151 6..524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55151.1.1prot_P-wetherbeei_contig55151.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55151 6..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55151.1.1

>prot_P-wetherbeei_contig55151.1.1 ID=prot_P-wetherbeei_contig55151.1.1|Name=mRNA_P-wetherbeei_contig55151.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
ANDITHPGDIDANDGEMQDLIDGKISFFSKDKRYVHKDGEIVWVGLTVSL
ERDSLGEPAYFLEVVRDIEARKRAEEHQFFLMRELSHRSKNLLAVIQAMA
RQTARISDGTDVFIERFTQRLHGLATSHDLLVHQNWRHVPLKDLLKQQLA
PFVETDSGRLVLDGPDVAVTPEA
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mRNA from alignment at P-wetherbeei_contig55151:6..524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55151.1.1 ID=mRNA_P-wetherbeei_contig55151.1.1|Name=mRNA_P-wetherbeei_contig55151.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig55151:6..524+ (Phaeothamnion wetherbeei SAG_119_79)
GCCAACGACATCACCCATCCGGGCGATATCGACGCCAACGACGGCGAAAT GCAGGACCTGATCGACGGCAAGATTTCATTCTTCTCGAAAGACAAGCGCT ACGTCCACAAGGACGGCGAGATCGTCTGGGTCGGGTTGACCGTTTCGCTG GAGCGCGACAGTCTGGGAGAGCCCGCCTATTTTCTCGAGGTCGTACGCGA TATCGAGGCGCGCAAGCGGGCCGAGGAACATCAGTTCTTCCTCATGCGCG AACTCTCCCATCGCTCGAAGAACCTGCTGGCGGTTATCCAGGCGATGGCG CGGCAGACGGCCCGCATATCGGACGGAACGGATGTTTTCATCGAGCGCTT CACCCAGCGCCTGCATGGTCTGGCGACGTCCCACGATCTGCTGGTTCACC AGAACTGGCGGCATGTCCCGCTGAAAGATCTGCTGAAGCAGCAGCTGGCG CCGTTCGTCGAGACCGACAGCGGCCGGCTTGTTCTGGACGGCCCGGACGT CGCCGTGACGCCGGAAGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55151:6..524+

>mRNA_P-wetherbeei_contig55151.1.1 ID=mRNA_P-wetherbeei_contig55151.1.1|Name=mRNA_P-wetherbeei_contig55151.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig55151:6..524+ (Phaeothamnion wetherbeei SAG_119_79)
GCCAACGACATCACCCATCCGGGCGATATCGACGCCAACGACGGCGAAAT
GCAGGACCTGATCGACGGCAAGATTTCATTCTTCTCGAAAGACAAGCGCT
ACGTCCACAAGGACGGCGAGATCGTCTGGGTCGGGTTGACCGTTTCGCTG
GAGCGCGACAGTCTGGGAGAGCCCGCCTATTTTCTCGAGGTCGTACGCGA
TATCGAGGCGCGCAAGCGGGCCGAGGAACATCAGTTCTTCCTCATGCGCG
AACTCTCCCATCGCTCGAAGAACCTGCTGGCGGTTATCCAGGCGATGGCG
CGGCAGACGGCCCGCATATCGGACGGAACGGATGTTTTCATCGAGCGCTT
CACCCAGCGCCTGCATGGTCTGGCGACGTCCCACGATCTGCTGGTTCACC
AGAACTGGCGGCATGTCCCGCTGAAAGATCTGCTGAAGCAGCAGCTGGCG
CCGTTCGTCGAGACCGACAGCGGCCGGCTTGTTCTGGACGGCCCGGACGT
CGCCGTGACGCCGGAAGCC
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