mRNA_P-wetherbeei_contig55149.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55149.1.1
Unique NamemRNA_P-wetherbeei_contig55149.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55149.1.1 vs. uniprot
Match: A0A7W6JCE2_9CAUL (PAT family beta-lactamase induction signal transducer AmpG n=1 Tax=Brevundimonas lenta TaxID=424796 RepID=A0A7W6JCE2_9CAUL)

HSP 1 Score: 187 bits (476), Expect = 1.850e-53
Identity = 105/177 (59.32%), Postives = 126/177 (71.19%), Query Frame = 1
Query:    1 AADDARQGPMAAAYQWGYRIAMIVAGAAPLILAELYSWRFSYAAMAALMILGVAAVFAAPREAEHSVRPIPMGDTVARPVLEVAEWVLRLAILVTGGLLLGSGLAASADFLASILTALGAGGLG-EAMKGAW-ASDNKVWFQLLAVIGGLAVIAAATLRIPGVSTRPGAYLSGALGQ 525
            A+DD R G MAAAYQWGYRIA+IVAGA PLILA+LY+W  SYA MAALM LGVA V  APRE  H++RPIP+GD  +RP LEV EWV RL +++   L++GSGL  +AD LA  L   G    G EA+K AW A    V+ Q+ AVIGGL ++  A   IPGV TRPGAYL+G+ GQ
Sbjct:  150 ASDDTRHGAMAAAYQWGYRIAIIVAGAVPLILADLYNWNLSYAVMAALMGLGVAGVLLAPRERAHTIRPIPVGDVPSRPPLEVLEWVARLLVIIIAALIVGSGLTGAADLLAGGLGLAGLSAEGKEALKAAWEAKPQGVYLQVAAVIGGLTLLVVACWPIPGVKTRPGAYLAGSFGQ 326          
BLAST of mRNA_P-wetherbeei_contig55149.1.1 vs. uniprot
Match: A0A7V9SIM3_9BACT (MFS transporter n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7V9SIM3_9BACT)

HSP 1 Score: 183 bits (465), Expect = 7.370e-52
Identity = 100/173 (57.80%), Postives = 119/173 (68.79%), Query Frame = 1
Query:    1 AADDARQGPMAAAYQWGYRIAMIVAGAAPLILAELYSWRFSYAAMAALMILGVAAVFAAPREAEHSVRPIPMGDTVARPVLEVAEWVLRLAILVTGGLLLGSGLAASADFLASILTALGAGGLGEAMKGAWASDNKVWFQLLAVIGGLAVIAAATLRIPGVSTRPGAYLSGAL 519
            AA  +RQG MAAAYQWGYR+A+IVAGA PL+LAE Y W FSYA MAALM +GV  V AAPRE  H++RPI  G     P  E  EW  RLA+L  G L+LGSGLAA+A  L  +L A+GA G  + +  AWAS+ +VW  L AV+ G A+I  ATL +PG  TRPG YLS AL
Sbjct:  151 AAGVSRQGVMAAAYQWGYRVAIIVAGAVPLLLAESYGWNFSYAVMAALMAVGVLGVLAAPREERHAIRPIQTGGIQPAPAREALEWAARLALLAAGALVLGSGLAANAGVLGGVLGAVGATGPRDLVLSAWASEARVWIHLAAVLAGFALIVLATLPLPGARTRPGVYLSSAL 323          
BLAST of mRNA_P-wetherbeei_contig55149.1.1 vs. uniprot
Match: A0A522CFU6_9CAUL (MFS transporter n=1 Tax=Phenylobacterium sp. TaxID=1871053 RepID=A0A522CFU6_9CAUL)

HSP 1 Score: 180 bits (457), Expect = 4.990e-51
Identity = 103/175 (58.86%), Postives = 120/175 (68.57%), Query Frame = 1
Query:    1 AADDARQGPMAAAYQWGYRIAMIVAGAAPLILAELYSWRFSYAAMAALMILGVAAVFAAPREAEHSVRPIPMGDTVARPVLEVAEWVLRLAILVTGGLLLGSGLAASADFLASILTALGAGGLGEAMKGAWASDNK-VWFQLLAVIGGLAVIAAATLRIPGVSTRPGAYLSGALG 522
            AA   +QG MAAAYQWGYRIAMIVAGAAPL++AE Y W  SYA MA LM+ GVA V  APRE EH +RPI      +RP LE+ EW+ RLA+ V G LLLGSGLAA A  LA+ L +LG     EA+K AW    + V+FQLL+V  GL +I  A L IPG+ TRPG YL  ALG
Sbjct:  123 AAPTEKQGAMAAAYQWGYRIAMIVAGAAPLLIAESYGWSASYAVMAGLMLAGVAGVLGAPREKEHVIRPIHAEGVPSRPALELPEWIARLAVFVFGALLLGSGLAADASLLAAGLNSLGLPAAAEAVKAAWEMKPQGVYFQLLSVAAGLGIIVVAILPIPGLKTRPGVYLFAALG 297          
BLAST of mRNA_P-wetherbeei_contig55149.1.1 vs. uniprot
Match: A0A519IXZ7_9CAUL (MFS transporter n=1 Tax=Brevundimonas sp. TaxID=1871086 RepID=A0A519IXZ7_9CAUL)

HSP 1 Score: 181 bits (459), Expect = 5.240e-51
Identity = 96/177 (54.24%), Postives = 121/177 (68.36%), Query Frame = 1
Query:    1 AADDARQGPMAAAYQWGYRIAMIVAGAAPLILAELYSWRFSYAAMAALMILGVAAVFAAPREAEHSVRPIPMGDTVARPVLEVAEWVLRLAILVTGGLLLGSGLAASADFLASILTALGAGGLG-EAMKGAW-ASDNKVWFQLLAVIGGLAVIAAATLRIPGVSTRPGAYLSGALGQ 525
            AADD R G MAAAYQWGYR+AM+VAGA PL+LA+LY+W  SYA MAALM +GVA V  APRE  H++RPIP+GD  +RP  E+ EW++RL I+    L++GSGL   AD L S L  LG    G EA+  AW A     + Q+ A +GGL ++  A   +P V TRPGAYL+G+ GQ
Sbjct:  151 AADDTRHGAMAAAYQWGYRVAMLVAGAVPLVLADLYNWNLSYAVMAALMAVGVAGVLFAPREKAHTIRPIPVGDVPSRPAFEIVEWIVRLLIIAVAALIIGSGLTGKADLLVSALGLLGQSAEGGEALTAAWSAKPEGTYIQVAATLGGLLLLVLACWPVPNVQTRPGAYLAGSFGQ 327          
BLAST of mRNA_P-wetherbeei_contig55149.1.1 vs. uniprot
Match: A0A328BK24_9CAUL (Permease n=2 Tax=Phenylobacterium TaxID=20 RepID=A0A328BK24_9CAUL)

HSP 1 Score: 180 bits (457), Expect = 8.350e-51
Identity = 102/175 (58.29%), Postives = 122/175 (69.71%), Query Frame = 1
Query:    1 AADDARQGPMAAAYQWGYRIAMIVAGAAPLILAELYSWRFSYAAMAALMILGVAAVFAAPREAEHSVRPIPMGDTVARPVLEVAEWVLRLAILVTGGLLLGSGLAASADFLASILTALGAGGLGEAMKGAWASDNK-VWFQLLAVIGGLAVIAAATLRIPGVSTRPGAYLSGALG 522
            AA+  +QG MAAAYQWGYRIAMIVAGAAPL+LAE Y W  SYA MA LM+ GV  V  APRE  H++RPI      +RP LE+ EW+ RLA+   G LLLGSGLAA A  L+++L+A GA G  +A++GAW    + V+ QLLAV  GLA+I  A   IPGV TRPG YL  ALG
Sbjct:  149 AAEVEKQGAMAAAYQWGYRIAMIVAGAAPLLLAEAYGWSASYAVMAGLMLFGVLGVLGAPREKAHAIRPIHAEGVPSRPALEIPEWIGRLAVFALGALLLGSGLAADASMLSALLSAQGANGAADAVRGAWEMKPEGVYVQLLAVAVGLAIIVLAICPIPGVRTRPGVYLFAALG 323          
BLAST of mRNA_P-wetherbeei_contig55149.1.1 vs. uniprot
Match: A0A1E4GZ97_9CAUL (Permease n=1 Tax=Phenylobacterium sp. SCN 70-31 TaxID=1660129 RepID=A0A1E4GZ97_9CAUL)

HSP 1 Score: 180 bits (456), Expect = 1.280e-50
Identity = 105/175 (60.00%), Postives = 122/175 (69.71%), Query Frame = 1
Query:    1 AADDARQGPMAAAYQWGYRIAMIVAGAAPLILAELYSWRFSYAAMAALMILGVAAVFAAPREAEHSVRPIPMGDTVARPVLEVAEWVLRLAILVTGGLLLGSGLAASADFLASILTALGAGGLGEAMKGAWASDNK-VWFQLLAVIGGLAVIAAATLRIPGVSTRPGAYLSGALG 522
            AA+  +QG MAAAYQWGYRIAMIVAGA PLILAE Y W  SYA MAALM+ GVA V  APRE  H+VRPI      +RP+LE+ EW+ R A+   G LLLGSGLAA A  LA++L   GA   GEA++ AWA+  + V+ QLL+V  GL VI  A L IPGV TRPG YL  ALG
Sbjct:  137 AAEVEKQGAMAAAYQWGYRIAMIVAGAVPLILAEAYGWSASYAVMAALMLAGVAGVLGAPREKAHAVRPIHAEGVPSRPLLELPEWLARFAVFGLGALLLGSGLAADASLLAALLAGAGAPDAGEAVRAAWAARPEGVYLQLLSVAVGLGVIVLAILPIPGVRTRPGVYLFAALG 311          
BLAST of mRNA_P-wetherbeei_contig55149.1.1 vs. uniprot
Match: A0A1G2W718_9CAUL (Permease n=2 Tax=Phenylobacterium TaxID=20 RepID=A0A1G2W718_9CAUL)

HSP 1 Score: 179 bits (454), Expect = 2.140e-50
Identity = 103/176 (58.52%), Postives = 122/176 (69.32%), Query Frame = 1
Query:    1 AADDARQGPMAAAYQWGYRIAMIVAGAAPLILAELYSWRFSYAAMAALMILGVAAVFAAPREAEHSVRPIPMGDTVARPVLEVAEWVLRLAILVTGGLLLGSGLAASADFLASILTALGAGGLGEAMKGAWASDNK-VWFQLLAVIGGLAVIAAATLRIPGVSTRPGAYLSGALGQ 525
            AA+  +QG MAAAYQWGYR+AMIVAGAAPL+LAE Y W  SYA MA LM+LGVA V  APRE  H+VRPI      +RP LE+ EW+ RLA+   G LLLG+GLAA A  LA+ L+A+G    G A+  AWA   + V+FQL AV  GLAVI  A   IPG+ TRPG YL  ALG+
Sbjct:  148 AAEVEKQGAMAAAYQWGYRVAMIVAGAAPLLLAEAYGWSASYAVMAGLMLLGVAGVLGAPREKVHAVRPIHAEGVPSRPALELPEWIARLAVFALGALLLGTGLAADASLLAAGLSAIGLPDAGLALTDAWAMKPQGVYFQLAAVAAGLAVIVLAVCPIPGLKTRPGVYLFAALGE 323          
BLAST of mRNA_P-wetherbeei_contig55149.1.1 vs. uniprot
Match: A0A524HZV1_9HYPH (MFS transporter n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A524HZV1_9HYPH)

HSP 1 Score: 179 bits (454), Expect = 2.960e-50
Identity = 96/169 (56.80%), Postives = 120/169 (71.01%), Query Frame = 1
Query:   16 RQGPMAAAYQWGYRIAMIVAGAAPLILAELYSWRFSYAAMAALMILGVAAVFAAPREAEHSVRPIPMGDTVARPVLEVAEWVLRLAILVTGGLLLGSGLAASADFLASILTALGAGGLGEAMKGAWASDNKVWFQLLAVIGGLAVIAAATLRIPGVSTRPGAYLSGALG 522
            +QG MAA+YQWGYRIA++VAGA PL+LAE YSW FSY  MA LMI+G+ AVFAAPRE +HS+R I +  T   P +E  EW +R  ILV G LL+GSGLAA++D L  +L+       G+A   AW SD +V +QLL+V+ G AVI  A L IPG+ +RPG YLS ALG
Sbjct:  160 KQGAMAASYQWGYRIALLVAGAVPLLLAEYYSWNFSYGVMAGLMIVGMLAVFAAPREEQHSIRSISVAGTQTSPGIESLEWAVRFCILVLGALLVGSGLAANSDALVWVLSIARLSSAGDAAAAAWQSDYRVLYQLLSVVLGFAVITMAALPIPGIRSRPGIYLSAALG 328          
BLAST of mRNA_P-wetherbeei_contig55149.1.1 vs. uniprot
Match: A0A7Y5WV63_9BACT (MFS transporter n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7Y5WV63_9BACT)

HSP 1 Score: 177 bits (448), Expect = 1.700e-49
Identity = 95/173 (54.91%), Postives = 122/173 (70.52%), Query Frame = 1
Query:    1 AADDARQGPMAAAYQWGYRIAMIVAGAAPLILAELYSWRFSYAAMAALMILGVAAVFAAPREAEHSVRPIPMGDTVARPVLEVAEWVLRLAILVTGGLLLGSGLAASADFLASILTALGAGGLGEAMKGAWASDNKVWFQLLAVIGGLAVIAAATLRIPGVSTRPGAYLSGAL 519
            AA+ ++QG MAAAYQWGYR+A+IVAGA PL+LA+ Y W F+YA MAALM +GV AV AAPRE  H++RPI        P+ +V EW++RLA++  G L+LGSGLA +A  + S+L ALGA     A+  AW+S  +VW Q+ AV+ G AVI  A L +P V TRPG YLS AL
Sbjct:  151 AAETSKQGAMAAAYQWGYRVAIIVAGAVPLLLAQKYGWNFAYALMAALMTIGVLAVLAAPREQRHAIRPIHTEGIPPAPLRDVVEWLVRLAVVAGGALVLGSGLAGNAGVMGSVLGALGAANARSAVLAAWSSSARVWVQVGAVVAGFAVIILAALPLPHVRTRPGVYLSSAL 323          
BLAST of mRNA_P-wetherbeei_contig55149.1.1 vs. uniprot
Match: A0A258DFU8_CAUVI (Permease n=1 Tax=Caulobacter vibrioides TaxID=155892 RepID=A0A258DFU8_CAUVI)

HSP 1 Score: 174 bits (441), Expect = 1.990e-48
Identity = 99/175 (56.57%), Postives = 121/175 (69.14%), Query Frame = 1
Query:    1 AADDARQGPMAAAYQWGYRIAMIVAGAAPLILAELYSWRFSYAAMAALMILGVAAVFAAPREAEHSVRPIPMGDTVARPVLEVAEWVLRLAILVTGGLLLGSGLAASADFLASILTALGAGGLGEAMKGAW-ASDNKVWFQLLAVIGGLAVIAAATLRIPGVSTRPGAYLSGALG 522
            A D++RQG MAAAYQWGYRIAMIVAGA PL+LA+   W FSY  MAALM++G AAV  APRE  H +RP+  G    RP  ++ EWV+RLA+L+TG LLLGSGLAA+A  L  +L    +    EA+  AW A  N VW QL  VI G+A++AA+   +PG  TRPGAYLS A G
Sbjct:  152 AVDESRQGAMAAAYQWGYRIAMIVAGALPLVLAQSLGWNFSYGLMAALMLVGSAAVLLAPREKAHLIRPVETGGAPRRPGADLGEWVVRLAVLLTGALLLGSGLAANATMLGQVLGPFLSEASVEALVKAWTARPNGVWLQLGGVIAGMALVAASAWPMPGRPTRPGAYLSQAFG 326          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55149.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W6JCE2_9CAUL1.850e-5359.32PAT family beta-lactamase induction signal transdu... [more]
A0A7V9SIM3_9BACT7.370e-5257.80MFS transporter n=1 Tax=Acidobacteria bacterium Ta... [more]
A0A522CFU6_9CAUL4.990e-5158.86MFS transporter n=1 Tax=Phenylobacterium sp. TaxID... [more]
A0A519IXZ7_9CAUL5.240e-5154.24MFS transporter n=1 Tax=Brevundimonas sp. TaxID=18... [more]
A0A328BK24_9CAUL8.350e-5158.29Permease n=2 Tax=Phenylobacterium TaxID=20 RepID=A... [more]
A0A1E4GZ97_9CAUL1.280e-5060.00Permease n=1 Tax=Phenylobacterium sp. SCN 70-31 Ta... [more]
A0A1G2W718_9CAUL2.140e-5058.52Permease n=2 Tax=Phenylobacterium TaxID=20 RepID=A... [more]
A0A524HZV1_9HYPH2.960e-5056.80MFS transporter n=1 Tax=Hyphomicrobiales bacterium... [more]
A0A7Y5WV63_9BACT1.700e-4954.91MFS transporter n=1 Tax=Acidobacteria bacterium Ta... [more]
A0A258DFU8_CAUVI1.990e-4856.57Permease n=1 Tax=Caulobacter vibrioides TaxID=1558... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55149contigP-wetherbeei_contig55149:1..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog366602.Caul_0190
PFAMsAcatn,MFS_1
Model size525
Max annot lvl204458|Caulobacterales
KEGG koko:K08218
KEGG TC2.A.1.25
KEGG Pathwayko01501,map01501
KEGG ModuleM00628
Hectar predicted targeting categorysignal peptide
Exons1
Evalue7.05e-45
EggNOG OGsCOG2271@1|root,COG2271@2|Bacteria,1QUF4@1224|Proteobacteria,2TW2A@28211|Alphaproteobacteria,2KGKY@204458|Caulobacterales
Descriptionmajor facilitator superfamily
Cds size498
COG categoryG
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.5342224-CDS-P-wetherbeei_contig55149:0..4981683186822.5342224-CDS-P-wetherbeei_contig55149:0..498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55149 1..498 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.5454056-UTR-P-wetherbeei_contig55149:498..5251683186822.5454056-UTR-P-wetherbeei_contig55149:498..525Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig55149 499..525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55149.1.1prot_P-wetherbeei_contig55149.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55149 1..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55149.1.1

>prot_P-wetherbeei_contig55149.1.1 ID=prot_P-wetherbeei_contig55149.1.1|Name=mRNA_P-wetherbeei_contig55149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
MAAAYQWGYRIAMIVAGAAPLILAELYSWRFSYAAMAALMILGVAAVFAA
PREAEHSVRPIPMGDTVARPVLEVAEWVLRLAILVTGGLLLGSGLAASAD
FLASILTALGAGGLGEAMKGAWASDNKVWFQLLAVIGGLAVIAAATLRIP
GVSTRPGAYLSGALGQ
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mRNA from alignment at P-wetherbeei_contig55149:1..525-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55149.1.1 ID=mRNA_P-wetherbeei_contig55149.1.1|Name=mRNA_P-wetherbeei_contig55149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig55149:1..525- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGACGACGCCCGGCAGGGCCCGATGGCCGCCGCCTACCAATGGGG CTACCGCATCGCCATGATCGTGGCCGGCGCCGCGCCCCTCATCCTCGCCG AGCTCTACAGCTGGCGCTTCTCCTACGCCGCGATGGCCGCGCTGATGATC CTCGGCGTCGCCGCCGTCTTCGCCGCACCGCGCGAAGCGGAGCATTCGGT GAGGCCGATCCCGATGGGCGACACCGTGGCGAGGCCGGTGCTGGAGGTGG CGGAGTGGGTTCTGCGCCTCGCCATCCTGGTGACCGGCGGTCTGCTTCTG GGCTCCGGTCTCGCCGCCAGCGCGGACTTCCTGGCCTCGATCCTGACGGC CCTCGGCGCCGGAGGCCTTGGGGAGGCGATGAAGGGCGCATGGGCGTCGG ACAACAAAGTCTGGTTCCAGCTGCTTGCGGTCATTGGGGGTCTCGCGGTG ATCGCGGCCGCCACGCTCAGGATTCCGGGCGTCAGCACCCGGCCCGGGGC CTACCTCTCCGGCGCTCTCGGCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55149:1..525-

>mRNA_P-wetherbeei_contig55149.1.1 ID=mRNA_P-wetherbeei_contig55149.1.1|Name=mRNA_P-wetherbeei_contig55149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig55149:1..525- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCCGCCTACCAATGGGGCTACCGCATCGCCATGATCGTGGCCGG
CGCCGCGCCCCTCATCCTCGCCGAGCTCTACAGCTGGCGCTTCTCCTACG
CCGCGATGGCCGCGCTGATGATCCTCGGCGTCGCCGCCGTCTTCGCCGCA
CCGCGCGAAGCGGAGCATTCGGTGAGGCCGATCCCGATGGGCGACACCGT
GGCGAGGCCGGTGCTGGAGGTGGCGGAGTGGGTTCTGCGCCTCGCCATCC
TGGTGACCGGCGGTCTGCTTCTGGGCTCCGGTCTCGCCGCCAGCGCGGAC
TTCCTGGCCTCGATCCTGACGGCCCTCGGCGCCGGAGGCCTTGGGGAGGC
GATGAAGGGCGCATGGGCGTCGGACAACAAAGTCTGGTTCCAGCTGCTTG
CGGTCATTGGGGGTCTCGCGGTGATCGCGGCCGCCACGCTCAGGATTCCG
GGCGTCAGCACCCGGCCCGGGGCCTACCTCTCCGGCGCTCTCGGCCAG
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