mRNA_P-wetherbeei_contig55130.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55130.1.1
Unique NamemRNA_P-wetherbeei_contig55130.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55130.1.1 vs. uniprot
Match: A0A523NXD4_9PROT (PPOX class F420-dependent oxidoreductase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NXD4_9PROT)

HSP 1 Score: 201 bits (510), Expect = 2.510e-64
Identity = 91/130 (70.00%), Postives = 113/130 (86.92%), Query Frame = 1
Query:    1 MAATIPENFQDMLTSKTTFAHLGTVMSNGTPQVTPVWFSYDGKQILLNSAKGRVKDKNMRARPHVALSILDPDNAYRYIQIIGEITEFTEQGADAHIDSLAKKYLGQDSYPFRQPGEVRVIYKVTPSKVQ 390
            M+  IP+ ++D+LT+K   AHLGT+M +G PQVTP+WFSYDG+ ILLNSAKGRVKD+NMRARP VALSI+DPDNA+RY+QI+G ITE TE GADAH+D+LA+KYLG+  YP+RQPGEVRVIYK+TP + Q
Sbjct:    1 MSDVIPDKYKDLLTTKAALAHLGTIMRDGRPQVTPIWFSYDGEHILLNSAKGRVKDRNMRARPKVALSIVDPDNAFRYVQIMGTITEITEDGADAHVDTLAQKYLGKPRYPWRQPGEVRVIYKITPDRAQ 130          
BLAST of mRNA_P-wetherbeei_contig55130.1.1 vs. uniprot
Match: A0A1F9KY24_9DELT (PPOX class F420-dependent enzyme n=1 Tax=Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19 TaxID=1797894 RepID=A0A1F9KY24_9DELT)

HSP 1 Score: 189 bits (480), Expect = 9.050e-60
Identity = 93/132 (70.45%), Postives = 106/132 (80.30%), Query Frame = 1
Query:    1 MAATIPENFQDMLTSKTTFAHLGTVMSNGTPQVTPVWFSYDGKQILLNSAKGRVKDKNMRARPHVALSILDPDNAYRYIQIIGEITEFTEQGADAHIDSLAKKYLGQDSYPFRQPGEVRVIYKVTPSKVQTM 396
            MAATIP  F+D+ T K  FAHLGT+M++G+PQVTPVW  YDG  I +NSAKGRVKDKNMR    VALSI+DPD+ YRY+ + G I E TEQGADAHIDSLAKKYLG+D YPF QPGEVRVIYK+ P KV TM
Sbjct:    1 MAATIPAKFRDLFT-KQAFAHLGTLMADGSPQVTPVWCDYDGTHIRINSAKGRVKDKNMRRNKKVALSIMDPDDPYRYLAVQGVIVEITEQGADAHIDSLAKKYLGKDKYPFGQPGEVRVIYKIRPEKVSTM 131          
BLAST of mRNA_P-wetherbeei_contig55130.1.1 vs. uniprot
Match: A0A534NHZ6_9DELT (PPOX class F420-dependent oxidoreductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534NHZ6_9DELT)

HSP 1 Score: 186 bits (472), Expect = 1.500e-58
Identity = 89/132 (67.42%), Postives = 107/132 (81.06%), Query Frame = 1
Query:    1 MAATIPENFQDMLTSKTTFAHLGTVMSNGTPQVTPVWFSYDGKQILLNSAKGRVKDKNMRARPHVALSILDPDNAYRYIQIIGEITEFTEQGADAHIDSLAKKYLGQDSYPFRQPGEVRVIYKVTPSKVQTM 396
            MAATIPEN++D+  SK  FA L T+MS+G+PQVTPVW  YDG  I +N+AKGRVKD+NMR    VAL+ILDPDN YR++ + GE+ E TEQGADAHID LAKKYLG+D YPFRQPGEVRV+YK+ P KV +M
Sbjct:    1 MAATIPENYRDLF-SKKAFAQLATLMSDGSPQVTPVWCDYDGSHIRINTAKGRVKDRNMRRNRKVALAILDPDNPYRHLAVRGEVAEITEQGADAHIDLLAKKYLGKDKYPFRQPGEVRVLYKIRPEKVSSM 131          
BLAST of mRNA_P-wetherbeei_contig55130.1.1 vs. uniprot
Match: A0A1F9DP64_9DELT (PPOX class F420-dependent enzyme n=5 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1F9DP64_9DELT)

HSP 1 Score: 184 bits (468), Expect = 6.090e-58
Identity = 87/132 (65.91%), Postives = 106/132 (80.30%), Query Frame = 1
Query:    1 MAATIPENFQDMLTSKTTFAHLGTVMSNGTPQVTPVWFSYDGKQILLNSAKGRVKDKNMRARPHVALSILDPDNAYRYIQIIGEITEFTEQGADAHIDSLAKKYLGQDSYPFRQPGEVRVIYKVTPSKVQTM 396
            MA TIP +++D+  +K  FAHLGTVM++G+PQVTPVW   DG  I +N+AKGRVKD+NMR    VAL+I+DPDNAYRY+ + GE+ E TEQGADAHID L KKYLG+D YPFRQPGEVRVIYK+ P K+ TM
Sbjct:    1 MAVTIPGSYRDLF-AKRAFAHLGTVMADGSPQVTPVWCDLDGSYIRINTAKGRVKDRNMRRNKKVALAIIDPDNAYRYLAVHGEVAEITEQGADAHIDLLTKKYLGKDKYPFRQPGEVRVIYKIRPEKISTM 131          
BLAST of mRNA_P-wetherbeei_contig55130.1.1 vs. uniprot
Match: A0A521QH54_9BACT (PPOX class F420-dependent oxidoreductase n=1 Tax=bacterium TaxID=1869227 RepID=A0A521QH54_9BACT)

HSP 1 Score: 184 bits (466), Expect = 1.230e-57
Identity = 88/132 (66.67%), Postives = 106/132 (80.30%), Query Frame = 1
Query:    1 MAATIPENFQDMLTSKTTFAHLGTVMSNGTPQVTPVWFSYDGKQILLNSAKGRVKDKNMRARPHVALSILDPDNAYRYIQIIGEITEFTEQGADAHIDSLAKKYLGQDSYPFRQPGEVRVIYKVTPSKVQTM 396
            MA TIPE+++D+ T K  FAHLGTVM +GTPQVTPVW  +DG  I +N+AKGRVKD+NMR   +VA++I DPDN YRY+ + GEI E TEQGADAHID LAKKYLG+D YPFR+PGEVRV+YK+ P KV  M
Sbjct:    1 MAVTIPESYRDLFTKKA-FAHLGTVMPDGTPQVTPVWCDFDGGCIRINTAKGRVKDRNMRRNKNVAITISDPDNPYRYLAVRGEIEEITEQGADAHIDLLAKKYLGKDKYPFRRPGEVRVLYKIRPEKVSIM 131          
BLAST of mRNA_P-wetherbeei_contig55130.1.1 vs. uniprot
Match: A0A534SH06_9DELT (PPOX class F420-dependent oxidoreductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534SH06_9DELT)

HSP 1 Score: 184 bits (466), Expect = 1.230e-57
Identity = 86/131 (65.65%), Postives = 104/131 (79.39%), Query Frame = 1
Query:    1 MAATIPENFQDMLTSKTTFAHLGTVMSNGTPQVTPVWFSYDGKQILLNSAKGRVKDKNMRARPHVALSILDPDNAYRYIQIIGEITEFTEQGADAHIDSLAKKYLGQDSYPFRQPGEVRVIYKVTPSKVQT 393
            MAATIPE F+D+ T K  FAHL T M++G+PQVTPVW  YDG  + +NSAKGRVKDKNMR    VALSI DPDN YRY+++ GE+ + TE+GAD HID+LAKKYLG++ YPFR PGEVRVIYK+ P K+ T
Sbjct:    1 MAATIPEKFKDLFT-KVAFAHLATSMADGSPQVTPVWVDYDGTHVRVNSAKGRVKDKNMRRNKRVALSIQDPDNPYRYLEVRGEVVDITEEGADTHIDALAKKYLGKERYPFRSPGEVRVIYKIRPDKIST 130          
BLAST of mRNA_P-wetherbeei_contig55130.1.1 vs. uniprot
Match: A0A6I1QYG2_9DELT (TIGR03618 family F420-dependent PPOX class oxidoreductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A6I1QYG2_9DELT)

HSP 1 Score: 181 bits (460), Expect = 1.010e-56
Identity = 86/132 (65.15%), Postives = 101/132 (76.52%), Query Frame = 1
Query:    1 MAATIPENFQDMLTSKTTFAHLGTVMSNGTPQVTPVWFSYDGKQILLNSAKGRVKDKNMRARPHVALSILDPDNAYRYIQIIGEITEFTEQGADAHIDSLAKKYLGQDSYPFRQPGEVRVIYKVTPSKVQTM 396
            MA  IPE F+D+   K  +AHL TVM +G+PQVTPVWF YDG  + +NSAKGR+KDKNMR    +AL+I DPDN YRY+ + GE+ E TE GADAHID LAKKYLG+D YPFR PGEVRVIYK+ P KV TM
Sbjct:    1 MADKIPEEFKDVF-GKVAYAHLATVMPDGSPQVTPVWFDYDGNHLRVNSAKGRIKDKNMRRNKKIALTIQDPDNPYRYLAVRGEVDEITEDGADAHIDFLAKKYLGKDQYPFRSPGEVRVIYKIRPEKVSTM 131          
BLAST of mRNA_P-wetherbeei_contig55130.1.1 vs. uniprot
Match: A0A2V7BEU7_9BACT (PPOX class F420-dependent oxidoreductase n=5 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A2V7BEU7_9BACT)

HSP 1 Score: 181 bits (458), Expect = 1.970e-56
Identity = 85/130 (65.38%), Postives = 104/130 (80.00%), Query Frame = 1
Query:    7 ATIPENFQDMLTSKTTFAHLGTVMSNGTPQVTPVWFSYDGKQILLNSAKGRVKDKNMRARPHVALSILDPDNAYRYIQIIGEITEFTEQGADAHIDSLAKKYLGQDSYPFRQPGEVRVIYKVTPSKVQTM 396
            ATIPEN++D+ T KT FAHL TV +N TPQVTPVW  +DG  + +N+A+GRVKD+N+R  P VALSI DPDN YRYIQ+ G + E TEQGADAHID+LAKKYLG+D YP+R+P EVRV  K+ P KVQT+
Sbjct:    2 ATIPENYRDLFTKKT-FAHLATVGANNTPQVTPVWCDWDGTYVRINTARGRVKDRNLRKNPRVALSIQDPDNPYRYIQVRGRVAEMTEQGADAHIDALAKKYLGKDKYPYRRPDEVRVTVKILPEKVQTL 130          
BLAST of mRNA_P-wetherbeei_contig55130.1.1 vs. uniprot
Match: A0A1F4QZ40_9BACT (PPOX class F420-dependent enzyme n=1 Tax=candidate division NC10 bacterium RIFCSPLOWO2_12_FULL_66_18 TaxID=1801659 RepID=A0A1F4QZ40_9BACT)

HSP 1 Score: 180 bits (457), Expect = 2.880e-56
Identity = 85/132 (64.39%), Postives = 103/132 (78.03%), Query Frame = 1
Query:    1 MAATIPENFQDMLTSKTTFAHLGTVMSNGTPQVTPVWFSYDGKQILLNSAKGRVKDKNMRARPHVALSILDPDNAYRYIQIIGEITEFTEQGADAHIDSLAKKYLGQDSYPFRQPGEVRVIYKVTPSKVQTM 396
            M+ATIP+ F+D+LT K  FAHL T+M +G+PQVTPVW  +DG  + +NSAKGR+KDKNMR    VAL+I DPDN YRY+ + G + E TE GADAHIDSLAKKYLGQD YP RQP EVRVIY++ P +V TM
Sbjct:    1 MSATIPQEFRDLLTKKA-FAHLATIMPDGSPQVTPVWIDFDGGHVRVNSAKGRIKDKNMRRNGRVALAIQDPDNPYRYLAVRGRVEEITEAGADAHIDSLAKKYLGQDRYPHRQPAEVRVIYRIRPERVSTM 131          
BLAST of mRNA_P-wetherbeei_contig55130.1.1 vs. uniprot
Match: A0A534UYE8_9DELT (PPOX class F420-dependent oxidoreductase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534UYE8_9DELT)

HSP 1 Score: 179 bits (455), Expect = 5.630e-56
Identity = 87/129 (67.44%), Postives = 101/129 (78.29%), Query Frame = 1
Query:    7 ATIPENFQDMLTSKTTFAHLGTVMSNGTPQVTPVWFSYDGKQILLNSAKGRVKDKNMRARPHVALSILDPDNAYRYIQIIGEITEFTEQGADAHIDSLAKKYLGQDSYPFRQPGEVRVIYKVTPSKVQT 393
            ATIPE F+D+  SK  FAHL T+M++G+PQVTPVW  YDG  + +NSAKGRVKDKNMR    VALSI DPDN YRY+ I GE+ E TE GADAHID+LAKKYLG++ YPFR P EVRVIYK+ P KV T
Sbjct:    2 ATIPEQFKDLF-SKVAFAHLATLMADGSPQVTPVWVDYDGAYVRVNSAKGRVKDKNMRRDKRVALSIQDPDNPYRYLAIRGEVAEITENGADAHIDALAKKYLGKERYPFRSPAEVRVIYKIRPDKVST 129          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55130.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A523NXD4_9PROT2.510e-6470.00PPOX class F420-dependent oxidoreductase n=1 Tax=P... [more]
A0A1F9KY24_9DELT9.050e-6070.45PPOX class F420-dependent enzyme n=1 Tax=Deltaprot... [more]
A0A534NHZ6_9DELT1.500e-5867.42PPOX class F420-dependent oxidoreductase n=1 Tax=D... [more]
A0A1F9DP64_9DELT6.090e-5865.91PPOX class F420-dependent enzyme n=5 Tax=unclassif... [more]
A0A521QH54_9BACT1.230e-5766.67PPOX class F420-dependent oxidoreductase n=1 Tax=b... [more]
A0A534SH06_9DELT1.230e-5765.65PPOX class F420-dependent oxidoreductase n=1 Tax=D... [more]
A0A6I1QYG2_9DELT1.010e-5665.15TIGR03618 family F420-dependent PPOX class oxidore... [more]
A0A2V7BEU7_9BACT1.970e-5665.38PPOX class F420-dependent oxidoreductase n=5 Tax=u... [more]
A0A1F4QZ40_9BACT2.880e-5664.39PPOX class F420-dependent enzyme n=1 Tax=candidate... [more]
A0A534UYE8_9DELT5.630e-5667.44PPOX class F420-dependent oxidoreductase n=1 Tax=D... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55130contigP-wetherbeei_contig55130:130..525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1187851.A33M_3396
PFAMsPutative_PNPOx,Pyridox_ox_2
Model size396
Max annot lvl2|Bacteria
KEGG koko:K07005
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.48e-42
EggNOG OGsCOG3467@1|root,COG3467@2|Bacteria
Descriptionpyridoxamine 5'-phosphate
Cds size396
COG categoryT
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.4080143-CDS-P-wetherbeei_contig55130:129..5251683186822.4080143-CDS-P-wetherbeei_contig55130:129..525Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55130 130..525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55130.1.1prot_P-wetherbeei_contig55130.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55130 130..525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55130.1.1

>prot_P-wetherbeei_contig55130.1.1 ID=prot_P-wetherbeei_contig55130.1.1|Name=mRNA_P-wetherbeei_contig55130.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
MAATIPENFQDMLTSKTTFAHLGTVMSNGTPQVTPVWFSYDGKQILLNSA
KGRVKDKNMRARPHVALSILDPDNAYRYIQIIGEITEFTEQGADAHIDSL
AKKYLGQDSYPFRQPGEVRVIYKVTPSKVQTM
back to top

mRNA from alignment at P-wetherbeei_contig55130:130..525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55130.1.1 ID=mRNA_P-wetherbeei_contig55130.1.1|Name=mRNA_P-wetherbeei_contig55130.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig55130:130..525+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCCACTATTCCGGAAAACTTTCAGGACATGCTCACCAGCAAGAC TACCTTCGCCCACCTCGGCACCGTCATGAGCAACGGCACTCCGCAGGTCA CGCCCGTCTGGTTCAGCTACGACGGTAAACAGATCCTGTTGAACTCGGCC AAGGGGCGCGTCAAAGACAAGAACATGCGTGCCCGCCCGCATGTCGCACT GTCCATACTCGATCCCGATAACGCCTACCGTTACATCCAGATCATCGGCG AGATCACTGAGTTCACTGAACAGGGTGCCGATGCGCACATCGACTCACTG GCCAAGAAATATCTCGGTCAGGACAGCTATCCCTTCCGCCAGCCGGGCGA AGTGCGGGTGATCTACAAGGTCACGCCGAGCAAGGTGCAGACCATG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig55130:130..525+

>mRNA_P-wetherbeei_contig55130.1.1 ID=mRNA_P-wetherbeei_contig55130.1.1|Name=mRNA_P-wetherbeei_contig55130.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig55130:130..525+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCCACTATTCCGGAAAACTTTCAGGACATGCTCACCAGCAAGAC
TACCTTCGCCCACCTCGGCACCGTCATGAGCAACGGCACTCCGCAGGTCA
CGCCCGTCTGGTTCAGCTACGACGGTAAACAGATCCTGTTGAACTCGGCC
AAGGGGCGCGTCAAAGACAAGAACATGCGTGCCCGCCCGCATGTCGCACT
GTCCATACTCGATCCCGATAACGCCTACCGTTACATCCAGATCATCGGCG
AGATCACTGAGTTCACTGAACAGGGTGCCGATGCGCACATCGACTCACTG
GCCAAGAAATATCTCGGTCAGGACAGCTATCCCTTCCGCCAGCCGGGCGA
AGTGCGGGTGATCTACAAGGTCACGCCGAGCAAGGTGCAGACCATG
back to top