mRNA_P-wetherbeei_contig55125.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55125.2.1
Unique NamemRNA_P-wetherbeei_contig55125.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig55125.2.1 vs. uniprot
Match: A0A1F3AC54_9PROT (Transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_66_14 TaxID=1797225 RepID=A0A1F3AC54_9PROT)

HSP 1 Score: 125 bits (313), Expect = 2.140e-34
Identity = 58/67 (86.57%), Postives = 62/67 (92.54%), Query Frame = 1 
Query:   73 MADDRLTARDWVNAGLKALARSGFTALKADTLSKALGVSRGSFYWHFADVGAFHAAVLQRWREVAYE 273
            M+DDRLT+RDWVNAGLK LA++GFTALKADTLSK LG SRGSFYWHFADVGAFHAAVL  WREVAYE
Sbjct:    1 MSDDRLTSRDWVNAGLKVLAKTGFTALKADTLSKGLGASRGSFYWHFADVGAFHAAVLHHWREVAYE 67
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BLAST of mRNA_P-wetherbeei_contig55125.2.1 vs. uniprot
Match: A0A0S6UNV9_9BRAD (HTH tetR-type domain-containing protein n=2 Tax=Bradyrhizobium sp. DOA9 TaxID=1126627 RepID=A0A0S6UNV9_9BRAD)

HSP 1 Score: 120 bits (301), Expect = 4.910e-32
Identity = 59/95 (62.11%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:    1 HLHTYLYGKIVPRIEPVNTQLYGIMA----DDRLTARDWVNAGLKALARSGFTALKADTLSKALGVSRGSFYWHFADVGAFHAAVLQRWREVAYE 273
            HLHT +YG I      VNT +YG +     + +L+A DW + GLKALA+ GFTALKAD L+KA+GVSRGSFYWHFAD+ AFHAAVL RWRE+A E
Sbjct:   22 HLHTLMYGSIASGKAHVNTLVYGTLPGNDMNQQLSADDWTSQGLKALAKGGFTALKADPLAKAMGVSRGSFYWHFADLAAFHAAVLARWREIAAE 116
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BLAST of mRNA_P-wetherbeei_contig55125.2.1 vs. uniprot
Match: A0A0D7NV98_9BRAD (Transcriptional regulator n=2 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=A0A0D7NV98_9BRAD)

HSP 1 Score: 110 bits (276), Expect = 6.640e-29
Identity = 49/64 (76.56%), Postives = 60/64 (93.75%), Query Frame = 1 
Query:   82 DRLTARDWVNAGLKALARSGFTALKADTLSKALGVSRGSFYWHFADVGAFHAAVLQRWREVAYE 273
            ++L+A DW+NAGLKALA+ GFTALKAD L+KA+GVSRGSFYWHFAD+GAFHAA+L+RWRE+A E
Sbjct:    3 EQLSADDWINAGLKALAKGGFTALKADPLAKAMGVSRGSFYWHFADLGAFHAAILKRWREIAAE 66
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BLAST of mRNA_P-wetherbeei_contig55125.2.1 vs. uniprot
Match: A0A410UYE0_9BRAD (TetR/AcrR family transcriptional regulator n=1 Tax=Bradyrhizobium guangdongense TaxID=1325090 RepID=A0A410UYE0_9BRAD)

HSP 1 Score: 110 bits (275), Expect = 9.400e-29
Identity = 51/64 (79.69%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:   82 DRLTARDWVNAGLKALARSGFTALKADTLSKALGVSRGSFYWHFADVGAFHAAVLQRWREVAYE 273
            ++L+A DW+  GLKALARSGFTALKAD L+KALGVSRGSFYWHFAD+GAFHAAVL+RWRE+A E
Sbjct:    3 EQLSADDWIKQGLKALARSGFTALKADPLAKALGVSRGSFYWHFADLGAFHAAVLKRWREIAAE 66
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BLAST of mRNA_P-wetherbeei_contig55125.2.1 vs. uniprot
Match: UPI001BA58FE5 (TetR/AcrR family transcriptional regulator n=2 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BA58FE5)

HSP 1 Score: 110 bits (275), Expect = 1.070e-28
Identity = 50/64 (78.12%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:   82 DRLTARDWVNAGLKALARSGFTALKADTLSKALGVSRGSFYWHFADVGAFHAAVLQRWREVAYE 273
            D+L+A+DWV+ GLK LARSGFTALKA+ L+KA+GVSRGSFYWHFAD+GAFHAA+L RWREVA E
Sbjct:    3 DQLSAKDWVDLGLKILARSGFTALKAEPLAKAMGVSRGSFYWHFADIGAFHAAILDRWREVATE 66
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BLAST of mRNA_P-wetherbeei_contig55125.2.1 vs. uniprot
Match: J3I4R0_9BRAD (Transcriptional regulator n=8 Tax=Bradyrhizobium TaxID=374 RepID=J3I4R0_9BRAD)

HSP 1 Score: 109 bits (273), Expect = 1.890e-28
Identity = 49/64 (76.56%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:   82 DRLTARDWVNAGLKALARSGFTALKADTLSKALGVSRGSFYWHFADVGAFHAAVLQRWREVAYE 273
            ++LTA DW+  GLKALA++GFTALKAD L+KA+GVSRGSFYWHFAD+GAFHAAVL+RWRE+A E
Sbjct:    3 EQLTAEDWIKEGLKALAKNGFTALKADPLAKAMGVSRGSFYWHFADLGAFHAAVLKRWREIAAE 66
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BLAST of mRNA_P-wetherbeei_contig55125.2.1 vs. uniprot
Match: A0A537PN83_9PROT (TetR/AcrR family transcriptional regulator n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537PN83_9PROT)

HSP 1 Score: 109 bits (273), Expect = 1.890e-28
Identity = 49/64 (76.56%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:   82 DRLTARDWVNAGLKALARSGFTALKADTLSKALGVSRGSFYWHFADVGAFHAAVLQRWREVAYE 273
            D+LTA+DW++ GLK LARSGFTALKA+ L+KA+GVSRGSFYWHFAD+GAFHAA+L+ WREVA E
Sbjct:    3 DQLTAKDWLDEGLKTLARSGFTALKAEPLAKAMGVSRGSFYWHFADIGAFHAAILKHWREVAAE 66
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BLAST of mRNA_P-wetherbeei_contig55125.2.1 vs. uniprot
Match: A0A6G8TVW6_9BRAD (TetR/AcrR family transcriptional regulator n=3 Tax=Bradyrhizobium TaxID=374 RepID=A0A6G8TVW6_9BRAD)

HSP 1 Score: 109 bits (272), Expect = 2.890e-28
Identity = 49/64 (76.56%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:   82 DRLTARDWVNAGLKALARSGFTALKADTLSKALGVSRGSFYWHFADVGAFHAAVLQRWREVAYE 273
            ++L+A DW+  GLKALARSGFTALKAD L+KA+GVSRGSFYWHFAD+GAFHAA+L+RWRE+A E
Sbjct:    3 EQLSAEDWIKEGLKALARSGFTALKADPLAKAMGVSRGSFYWHFADLGAFHAALLKRWREIAAE 66
[Close]
BLAST of mRNA_P-wetherbeei_contig55125.2.1 vs. uniprot
Match: UPI001BA5A369 (TetR/AcrR family transcriptional regulator n=2 Tax=Bradyrhizobium diazoefficiens TaxID=1355477 RepID=UPI001BA5A369)

HSP 1 Score: 108 bits (271), Expect = 3.780e-28
Identity = 49/64 (76.56%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:   82 DRLTARDWVNAGLKALARSGFTALKADTLSKALGVSRGSFYWHFADVGAFHAAVLQRWREVAYE 273
            ++L+A DW+NAGLKAL + GFTALKAD L++A+GVSRGSFYWHFAD+GAFHAAVL+RWREVA E
Sbjct:    3 EQLSADDWINAGLKALTKGGFTALKADPLARAMGVSRGSFYWHFADLGAFHAAVLKRWREVAAE 66
[Close]
BLAST of mRNA_P-wetherbeei_contig55125.2.1 vs. uniprot
Match: I2QKI2_9BRAD (HTH tetR-type domain-containing protein n=20 Tax=Bradyrhizobiaceae TaxID=41294 RepID=I2QKI2_9BRAD)

HSP 1 Score: 108 bits (270), Expect = 5.360e-28
Identity = 49/64 (76.56%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:   82 DRLTARDWVNAGLKALARSGFTALKADTLSKALGVSRGSFYWHFADVGAFHAAVLQRWREVAYE 273
            ++LTA DW+  GLKALAR GFTALKAD L+KA+GVSRGSFYWHFAD+GAFHAA+L+RWRE+A E
Sbjct:    3 EQLTADDWIKQGLKALARDGFTALKADPLAKAMGVSRGSFYWHFADLGAFHAALLKRWREIAAE 66
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55125.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F3AC54_9PROT2.140e-3486.57Transcriptional regulator n=1 Tax=Alphaproteobacte... [more]
A0A0S6UNV9_9BRAD4.910e-3262.11HTH tetR-type domain-containing protein n=2 Tax=Br... [more]
A0A0D7NV98_9BRAD6.640e-2976.56Transcriptional regulator n=2 Tax=unclassified Bra... [more]
A0A410UYE0_9BRAD9.400e-2979.69TetR/AcrR family transcriptional regulator n=1 Tax... [more]
UPI001BA58FE51.070e-2878.13TetR/AcrR family transcriptional regulator n=2 Tax... [more]
J3I4R0_9BRAD1.890e-2876.56Transcriptional regulator n=8 Tax=Bradyrhizobium T... [more]
A0A537PN83_9PROT1.890e-2876.56TetR/AcrR family transcriptional regulator n=2 Tax... [more]
A0A6G8TVW6_9BRAD2.890e-2876.56TetR/AcrR family transcriptional regulator n=3 Tax... [more]
UPI001BA5A3693.780e-2876.56TetR/AcrR family transcriptional regulator n=2 Tax... [more]
I2QKI2_9BRAD5.360e-2876.56HTH tetR-type domain-containing protein n=20 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55125contigP-wetherbeei_contig55125:254..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1038860.AXAP01000026_gene1818
PFAMsTetR_N
Model size273
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1e-31
EggNOG OGsCOG1309@1|root,COG1309@2|Bacteria,1R59A@1224|Proteobacteria,2U08S@28211|Alphaproteobacteria,3JYCX@41294|Bradyrhizobiaceae
DescriptionBacterial regulatory proteins, tetR family
Cds size273
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.303097-CDS-P-wetherbeei_contig55125:253..5261683186822.303097-CDS-P-wetherbeei_contig55125:253..526Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55125 254..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55125.2.1prot_P-wetherbeei_contig55125.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55125 254..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55125.2.1

>prot_P-wetherbeei_contig55125.2.1 ID=prot_P-wetherbeei_contig55125.2.1|Name=mRNA_P-wetherbeei_contig55125.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
HLHTYLYGKIVPRIEPVNTQLYGIMADDRLTARDWVNAGLKALARSGFTA
LKADTLSKALGVSRGSFYWHFADVGAFHAAVLQRWREVAYE
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mRNA from alignment at P-wetherbeei_contig55125:254..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55125.2.1 ID=mRNA_P-wetherbeei_contig55125.2.1|Name=mRNA_P-wetherbeei_contig55125.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig55125:254..526+ (Phaeothamnion wetherbeei SAG_119_79)
CATCTCCATACATACCTGTATGGTAAAATAGTACCGCGGATCGAACCCGT
CAATACACAACTGTATGGAATCATGGCCGACGATCGTTTGACCGCCCGGG
ATTGGGTGAACGCAGGTCTGAAGGCACTGGCCAGATCGGGCTTTACCGCG
CTCAAGGCCGATACTCTGTCGAAGGCGCTCGGCGTCTCGCGCGGCAGCTT
CTACTGGCACTTTGCCGATGTCGGCGCATTCCATGCTGCCGTCCTGCAAC
GCTGGCGCGAAGTCGCCTACGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55125:254..526+

>mRNA_P-wetherbeei_contig55125.2.1 ID=mRNA_P-wetherbeei_contig55125.2.1|Name=mRNA_P-wetherbeei_contig55125.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig55125:254..526+ (Phaeothamnion wetherbeei SAG_119_79)
CATCTCCATACATACCTGTATGGTAAAATAGTACCGCGGATCGAACCCGT
CAATACACAACTGTATGGAATCATGGCCGACGATCGTTTGACCGCCCGGG
ATTGGGTGAACGCAGGTCTGAAGGCACTGGCCAGATCGGGCTTTACCGCG
CTCAAGGCCGATACTCTGTCGAAGGCGCTCGGCGTCTCGCGCGGCAGCTT
CTACTGGCACTTTGCCGATGTCGGCGCATTCCATGCTGCCGTCCTGCAAC
GCTGGCGCGAAGTCGCCTACGAG
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