mRNA_P-wetherbeei_contig55124.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55124.1.1
Unique NamemRNA_P-wetherbeei_contig55124.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55124.1.1 vs. uniprot
Match: A0A5C7NNQ6_9PROT (Ferric uptake regulation protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A5C7NNQ6_9PROT)

HSP 1 Score: 116 bits (290), Expect = 9.050e-32
Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = 1
Query:    1 LHQFTEVGMLREVVIEPGRSYFDTNVSNHHHFYLEEDGALMDIPGEHIALAELPAPPAGLKVSRVDVVVRVTR 219
            LHQFT+ G+LREVVIEPGRSYFDTNV++HHHF+ E+DG L DIPG+ IALA +P  P+G  VSRVDV+VRVT+
Sbjct:   65 LHQFTQAGLLREVVIEPGRSYFDTNVTDHHHFFFEDDGQLQDIPGDEIALARVPTAPSGTHVSRVDVIVRVTK 137          
BLAST of mRNA_P-wetherbeei_contig55124.1.1 vs. uniprot
Match: UPI0004BA812B (transcriptional repressor n=3 Tax=Rhodovibrio TaxID=85274 RepID=UPI0004BA812B)

HSP 1 Score: 114 bits (285), Expect = 7.540e-31
Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    1 LHQFTEVGMLREVVIEPGRSYFDTNVSNHHHFYLEEDGALMDIPGEHIALAELPAPPAGLKVSRVDVVVRVTR 219
            L+QFTEVG+LREVV+EPGRSYFDTN+ +HHHFY ++DG+L DIPGE + LAELP  P G +V RVDV+VRV R
Sbjct:   77 LNQFTEVGLLREVVVEPGRSYFDTNIHDHHHFYYQDDGSLQDIPGEQVRLAELPQAPDGTRVDRVDVIVRVRR 149          
BLAST of mRNA_P-wetherbeei_contig55124.1.1 vs. uniprot
Match: A0A4R6WTA4_9PROT (Ferric uptake regulation protein n=1 Tax=Dongia mobilis TaxID=578943 RepID=A0A4R6WTA4_9PROT)

HSP 1 Score: 112 bits (279), Expect = 4.370e-30
Identity = 50/71 (70.42%), Postives = 60/71 (84.51%), Query Frame = 1
Query:    1 LHQFTEVGMLREVVIEPGRSYFDTNVSNHHHFYLEEDGALMDIPGEHIALAELPAPPAGLKVSRVDVVVRV 213
            LHQFT  G+LREVV+EPGRSYFDTN   HHHF++E  G LMDIP + +ALA LPAPPAG+KV+RVDV+VR+
Sbjct:   65 LHQFTAAGLLREVVVEPGRSYFDTNTRPHHHFFVEGSGRLMDIPADDVALAHLPAPPAGMKVARVDVIVRL 135          
BLAST of mRNA_P-wetherbeei_contig55124.1.1 vs. uniprot
Match: UPI001872BB3D (transcriptional repressor n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI001872BB3D)

HSP 1 Score: 111 bits (277), Expect = 9.860e-30
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    1 LHQFTEVGMLREVVIEPGRSYFDTNVSNHHHFYLEEDGALMDIPGEHIALAELPAPPAGLKVSRVDVVVRV 213
            LHQFTE G+LREVV+E GRSYFDTNV++HHHFY E+ G L DIPGE + L  LP PP G KV+RVDV++RV
Sbjct:   68 LHQFTEAGLLREVVVESGRSYFDTNVTDHHHFYFEDSGRLQDIPGEMVQLENLPTPPVGAKVARVDVIIRV 138          
BLAST of mRNA_P-wetherbeei_contig55124.1.1 vs. uniprot
Match: A0A3S2Z8D3_9PROT (Ferric uptake regulation protein n=1 Tax=Hwanghaeella grinnelliae TaxID=2500179 RepID=A0A3S2Z8D3_9PROT)

HSP 1 Score: 110 bits (276), Expect = 1.180e-29
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 LHQFTEVGMLREVVIEPGRSYFDTNVSNHHHFYLEEDGALMDIPGEHIALAELPAPPAGLKVSRVDVVVRVT 216
            LHQF E G+LREVV+EPGRSYFDTN+ NHHHFY  + G L+DIP  H+ LA LP PP+G KV RVDVVVR++
Sbjct:   63 LHQFKEAGLLREVVVEPGRSYFDTNIDNHHHFYDPQTGELIDIPSSHVTLASLPTPPSGKKVDRVDVVVRLS 134          
BLAST of mRNA_P-wetherbeei_contig55124.1.1 vs. uniprot
Match: UPI000E5CDBC6 (transcriptional repressor n=1 Tax=Algihabitans albus TaxID=2164067 RepID=UPI000E5CDBC6)

HSP 1 Score: 110 bits (276), Expect = 1.360e-29
Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    1 LHQFTEVGMLREVVIEPGRSYFDTNVSNHHHFYLEEDGALMDIPGEHIALAELPAPPAGLKVSRVDVVVRV 213
            LHQFT+ G+LREVV+E GRSYFDTNV +HHHFY E+DG L DIPG+H+ LAELP  P G  + RVDV++RV
Sbjct:   69 LHQFTDAGLLREVVVESGRSYFDTNVDDHHHFYFEDDGRLQDIPGDHVRLAELPDAPEGAAIRRVDVIIRV 139          
BLAST of mRNA_P-wetherbeei_contig55124.1.1 vs. uniprot
Match: UPI0003B6E7EA (transcriptional repressor n=2 Tax=Fodinicurvata TaxID=1121829 RepID=UPI0003B6E7EA)

HSP 1 Score: 110 bits (276), Expect = 1.360e-29
Identity = 47/72 (65.28%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 LHQFTEVGMLREVVIEPGRSYFDTNVSNHHHFYLEEDGALMDIPGEHIALAELPAPPAGLKVSRVDVVVRVT 216
            L+QFTE G+LREVV+EPGRSYFDTN+ +HHHF+ EE G L+DIPGE + L+ +P PP G KV RVDV++RV+
Sbjct:   69 LNQFTEAGLLREVVVEPGRSYFDTNIGDHHHFFFEESGKLVDIPGEEVQLSSVPTPPEGAKVQRVDVIIRVS 140          
BLAST of mRNA_P-wetherbeei_contig55124.1.1 vs. uniprot
Match: A0A831XVS2_9GAMM (Ferric uptake regulation protein n=1 Tax=Halothiobacillaceae bacterium TaxID=2268194 RepID=A0A831XVS2_9GAMM)

HSP 1 Score: 110 bits (276), Expect = 1.480e-29
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    1 LHQFTEVGMLREVVIEPGRSYFDTNVSNHHHFYLEEDGALMDIPGEHIALAELPAPPAGLKVSRVDVVVRV 213
            LHQFTE G+LREVV+EPGRSYFDTN S+HHHF+ EE G L DIPGE IA+ +LP PP G  V RVD++VRV
Sbjct:   66 LHQFTEAGLLREVVVEPGRSYFDTNTSDHHHFFHEETGDLQDIPGEAIAVGQLPLPPEGTSVQRVDIIVRV 136          
BLAST of mRNA_P-wetherbeei_contig55124.1.1 vs. uniprot
Match: A0A8I1S0A0_9PROT (Ferric uptake regulation protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A8I1S0A0_9PROT)

HSP 1 Score: 110 bits (276), Expect = 1.800e-29
Identity = 51/73 (69.86%), Postives = 62/73 (84.93%), Query Frame = 1
Query:    1 LHQFTEVGMLREVVIEPGRSYFDTNVSNHHHFYLEEDGALMDIPGEHIALAELPAPPAGLKVSRVDVVVRVTR 219
            LHQFTE G+LR+VV++ GRSYFDTNV +H HF+LEE+G L+DIPGE IA++ +PAPP GL V RVDVVVRV R
Sbjct:   79 LHQFTEAGLLRQVVVDAGRSYFDTNVGDHQHFFLEEEGYLIDIPGETIAVSNVPAPPEGLAVDRVDVVVRVKR 151          
BLAST of mRNA_P-wetherbeei_contig55124.1.1 vs. uniprot
Match: UPI001423E480 (transcriptional repressor n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI001423E480)

HSP 1 Score: 109 bits (273), Expect = 4.340e-29
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 LHQFTEVGMLREVVIEPGRSYFDTNVSNHHHFYLEEDGALMDIPGEHIALAELPAPPAGLKVSRVDVVVRVT 216
            LHQFT  G+LREVV+EPGRSYFDTNVS+HHHFY E+ G L DIPGE + L  LP PP G +V+R+DV+VR++
Sbjct:   68 LHQFTGAGLLREVVVEPGRSYFDTNVSDHHHFYFEDGGRLQDIPGEQVHLEGLPTPPEGTRVARIDVIVRLS 139          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55124.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C7NNQ6_9PROT9.050e-3271.23Ferric uptake regulation protein n=1 Tax=Rhodospir... [more]
UPI0004BA812B7.540e-3169.86transcriptional repressor n=3 Tax=Rhodovibrio TaxI... [more]
A0A4R6WTA4_9PROT4.370e-3070.42Ferric uptake regulation protein n=1 Tax=Dongia mo... [more]
UPI001872BB3D9.860e-3069.01transcriptional repressor n=1 Tax=Pelagibius sp. N... [more]
A0A3S2Z8D3_9PROT1.180e-2968.06Ferric uptake regulation protein n=1 Tax=Hwanghaee... [more]
UPI000E5CDBC61.360e-2967.61transcriptional repressor n=1 Tax=Algihabitans alb... [more]
UPI0003B6E7EA1.360e-2965.28transcriptional repressor n=2 Tax=Fodinicurvata Ta... [more]
A0A831XVS2_9GAMM1.480e-2970.42Ferric uptake regulation protein n=1 Tax=Halothiob... [more]
A0A8I1S0A0_9PROT1.800e-2969.86Ferric uptake regulation protein n=1 Tax=Alphaprot... [more]
UPI001423E4804.340e-2966.67transcriptional repressor n=1 Tax=Pelagibius litor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55124contigP-wetherbeei_contig55124:2..226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1089552.KI911559_gene421
PFAMsFUR
Model size225
Max annot lvl204441|Rhodospirillales
KEGG koko:K09826
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.81e-26
EggNOG OGsCOG0735@1|root,COG0735@2|Bacteria,1RH58@1224|Proteobacteria,2U75R@28211|Alphaproteobacteria,2JT3E@204441|Rhodospirillales
DescriptionBelongs to the Fur family
Cds size201
COG categoryK
BRITEko00000,ko03000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.2254558-UTR-P-wetherbeei_contig55124:1..251683186822.2254558-UTR-P-wetherbeei_contig55124:1..25Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig55124 2..25 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186822.2379313-CDS-P-wetherbeei_contig55124:25..2261683186822.2379313-CDS-P-wetherbeei_contig55124:25..226Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55124 26..226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55124.1.1prot_P-wetherbeei_contig55124.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55124 26..226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55124.1.1

>prot_P-wetherbeei_contig55124.1.1 ID=prot_P-wetherbeei_contig55124.1.1|Name=mRNA_P-wetherbeei_contig55124.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
MLREVVIEPGRSYFDTNVSNHHHFYLEEDGALMDIPGEHIALAELPAPPA
GLKVSRVDVVVRVTRR*
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mRNA from alignment at P-wetherbeei_contig55124:2..226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55124.1.1 ID=mRNA_P-wetherbeei_contig55124.1.1|Name=mRNA_P-wetherbeei_contig55124.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig55124:2..226+ (Phaeothamnion wetherbeei SAG_119_79)
CTGCACCAGTTCACCGAGGTCGGCATGCTGCGCGAGGTGGTGATCGAGCC GGGCCGCTCCTATTTCGACACCAATGTCAGCAACCACCATCACTTCTATC TGGAAGAGGATGGCGCGCTGATGGACATCCCCGGCGAGCATATTGCGCTC GCCGAACTGCCCGCCCCGCCCGCGGGGCTGAAGGTCAGCCGGGTCGATGT CGTGGTCCGGGTCACGCGCCGTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55124:2..226+

>mRNA_P-wetherbeei_contig55124.1.1 ID=mRNA_P-wetherbeei_contig55124.1.1|Name=mRNA_P-wetherbeei_contig55124.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig55124:2..226+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGCGCGAGGTGGTGATCGAGCCGGGCCGCTCCTATTTCGACACCAA
TGTCAGCAACCACCATCACTTCTATCTGGAAGAGGATGGCGCGCTGATGG
ACATCCCCGGCGAGCATATTGCGCTCGCCGAACTGCCCGCCCCGCCCGCG
GGGCTGAAGGTCAGCCGGGTCGATGTCGTGGTCCGGGTCACGCGCCGTTG
A
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