mRNA_P-wetherbeei_contig55121.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig55121.1.1 vs. uniprot
Match: UPI0019CDEB65 (Polysaccharide deacetylase family protein n=1 Tax=Rhodoferax sp. TaxID=50421 RepID=UPI0019CDEB65) HSP 1 Score: 333 bits (855), Expect = 1.280e-113 Identity = 154/174 (88.51%), Postives = 160/174 (91.95%), Query Frame = 1
Query: 1 DAMDRCGMRGSVSLNVAMCEHHPEIIKDCADSGWEFYSHGTYNTRYLFNMDEAQERAVIQDSIDTIRKHTGQKLDGWLAPALTYTDNTLDLVADMGLTYVCDLFHDDQPGPVKVKKGRLVSVPYSLEMNDVIVYNVNLVSPRRYGEILKRQFDRLYAEGAESGTVMCIPLHPYL 522
DAM RC MRGSVSLNVA+CEHHPE+IK CAD+GWEFYSHGTYNTRYL MDE QER+VIQDSIDTI KHTGQKLDGWLAPALTYTDNTLDLVADMGLTYVCDLFHDDQPGPVKVKKGRL SVPYSLEMND I YNVNLV PRRY +ILKRQFDRLY EG +SGTVMCIPLHPYL
Sbjct: 77 DAMKRCNMRGSVSLNVAVCEHHPEVIKACADNGWEFYSHGTYNTRYLMGMDETQERSVIQDSIDTIHKHTGQKLDGWLAPALTYTDNTLDLVADMGLTYVCDLFHDDQPGPVKVKKGRLTSVPYSLEMNDTIAYNVNLVQPRRYADILKRQFDRLYQEGEQSGTVMCIPLHPYL 250
BLAST of mRNA_P-wetherbeei_contig55121.1.1 vs. uniprot
Match: UPI000A44DA43 (polysaccharide deacetylase family protein n=1 Tax=Limnohabitans sp. Rim11 TaxID=1100719 RepID=UPI000A44DA43) HSP 1 Score: 328 bits (841), Expect = 2.340e-111 Identity = 151/174 (86.78%), Postives = 159/174 (91.38%), Query Frame = 1
Query: 1 DAMDRCGMRGSVSLNVAMCEHHPEIIKDCADSGWEFYSHGTYNTRYLFNMDEAQERAVIQDSIDTIRKHTGQKLDGWLAPALTYTDNTLDLVADMGLTYVCDLFHDDQPGPVKVKKGRLVSVPYSLEMNDVIVYNVNLVSPRRYGEILKRQFDRLYAEGAESGTVMCIPLHPYL 522
D M RC MRGSVSLNVAMC+HHPE+IK CAD GWEFYSHGTYNTRYL M+EAQER VIQDSIDTI KHTGQKLDGWLAPALTYT NT+DLVADMGLTYVCDLFHDDQPGPVKVKKG+L S+PYSLEMND IVYNVNLVSPRRYG+I+KRQFDRLY EG SGTVMCIPLHPYL
Sbjct: 86 DVMKRCNMRGSVSLNVAMCDHHPEVIKACADEGWEFYSHGTYNTRYLMGMNEAQERQVIQDSIDTIYKHTGQKLDGWLAPALTYTPNTMDLVADMGLTYVCDLFHDDQPGPVKVKKGKLTSMPYSLEMNDTIVYNVNLVSPRRYGDIIKRQFDRLYEEGEHSGTVMCIPLHPYL 259
BLAST of mRNA_P-wetherbeei_contig55121.1.1 vs. uniprot
Match: A0A848HED6_9BURK (Polysaccharide deacetylase family protein n=2 Tax=Ramlibacter agri TaxID=2728837 RepID=A0A848HED6_9BURK) HSP 1 Score: 327 bits (838), Expect = 4.940e-111 Identity = 151/174 (86.78%), Postives = 159/174 (91.38%), Query Frame = 1
Query: 1 DAMDRCGMRGSVSLNVAMCEHHPEIIKDCADSGWEFYSHGTYNTRYLFNMDEAQERAVIQDSIDTIRKHTGQKLDGWLAPALTYTDNTLDLVADMGLTYVCDLFHDDQPGPVKVKKGRLVSVPYSLEMNDVIVYNVNLVSPRRYGEILKRQFDRLYAEGAESGTVMCIPLHPYL 522
+ M RC MRGSVSLNVAMCEHHPE+I CA GWEFYSHGTYNTRYL NM E QERAVIQDSIDTIRKHTGQKLDGWLAPALTYTD T+DLVA+MGLTYVCDLFHDDQPGPVKVK+G+L S+PYSLEMNDVIVYNVNLVSPRRY +ILKRQFDRLYAEG SGTVMCIPLHPYL
Sbjct: 77 ETMKRCNMRGSVSLNVAMCEHHPEVIAACAKEGWEFYSHGTYNTRYLMNMTEEQERAVIQDSIDTIRKHTGQKLDGWLAPALTYTDRTMDLVAEMGLTYVCDLFHDDQPGPVKVKQGKLTSIPYSLEMNDVIVYNVNLVSPRRYADILKRQFDRLYAEGERSGTVMCIPLHPYL 250
BLAST of mRNA_P-wetherbeei_contig55121.1.1 vs. uniprot
Match: A0A4Q6FHW3_9GAMM (Polysaccharide deacetylase n=1 Tax=Xanthomonadaceae bacterium TaxID=1926873 RepID=A0A4Q6FHW3_9GAMM) HSP 1 Score: 325 bits (833), Expect = 2.850e-110 Identity = 148/174 (85.06%), Postives = 161/174 (92.53%), Query Frame = 1
Query: 1 DAMDRCGMRGSVSLNVAMCEHHPEIIKDCADSGWEFYSHGTYNTRYLFNMDEAQERAVIQDSIDTIRKHTGQKLDGWLAPALTYTDNTLDLVADMGLTYVCDLFHDDQPGPVKVKKGRLVSVPYSLEMNDVIVYNVNLVSPRRYGEILKRQFDRLYAEGAESGTVMCIPLHPYL 522
+ M RC MRGSVSLNVAMCEHHPE+I+ CA++GWEFYSHGTYNTRYL M EAQERAVIQDSIDTI+KHTGQ+LDGWLAPALTYTD T+DLVA+MGLTYVCDLFHDDQPGPVK K GR+ S+PYSLEMND IVYNVNLVSPRRYG+ILKRQFDRLYAEG +SGTVMCIPLHPYL
Sbjct: 77 ETMKRCNMRGSVSLNVAMCEHHPEVIEACAENGWEFYSHGTYNTRYLMGMTEAQERAVIQDSIDTIKKHTGQRLDGWLAPALTYTDRTMDLVAEMGLTYVCDLFHDDQPGPVKTKTGRISSIPYSLEMNDTIVYNVNLVSPRRYGDILKRQFDRLYAEGEKSGTVMCIPLHPYL 250
BLAST of mRNA_P-wetherbeei_contig55121.1.1 vs. uniprot
Match: A0A521YKB8_9PROT (Polysaccharide deacetylase n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A521YKB8_9PROT) HSP 1 Score: 325 bits (832), Expect = 3.910e-110 Identity = 145/174 (83.33%), Postives = 162/174 (93.10%), Query Frame = 1
Query: 1 DAMDRCGMRGSVSLNVAMCEHHPEIIKDCADSGWEFYSHGTYNTRYLFNMDEAQERAVIQDSIDTIRKHTGQKLDGWLAPALTYTDNTLDLVADMGLTYVCDLFHDDQPGPVKVKKGRLVSVPYSLEMNDVIVYNVNLVSPRRYGEILKRQFDRLYAEGAESGTVMCIPLHPYL 522
+AMDRCGMRGSVSLNVA+C+HHPE+I+ C GWE YSHGTYNTRYLF M EAQERA+IQDSID +RKH+GQKLDGWLAPALTYT+ TLDLVA+MGLTYVCDLFHDDQPGPVKV+ GRL S+PYSLEMNDVI YN+NLVSPRRYG+I++RQFDRLYAEGA+SGTVMCIPLHPYL
Sbjct: 77 EAMDRCGMRGSVSLNVAVCDHHPEVIQACVQRGWELYSHGTYNTRYLFEMSEAQERALIQDSIDAVRKHSGQKLDGWLAPALTYTERTLDLVAEMGLTYVCDLFHDDQPGPVKVRDGRLASIPYSLEMNDVIAYNINLVSPRRYGDIIRRQFDRLYAEGADSGTVMCIPLHPYL 250
BLAST of mRNA_P-wetherbeei_contig55121.1.1 vs. uniprot
Match: A0A1Q8IYJ2_9BURK (Polysaccharide deacetylase n=8 Tax=Burkholderiales TaxID=80840 RepID=A0A1Q8IYJ2_9BURK) HSP 1 Score: 324 bits (830), Expect = 8.140e-110 Identity = 148/174 (85.06%), Postives = 157/174 (90.23%), Query Frame = 1
Query: 1 DAMDRCGMRGSVSLNVAMCEHHPEIIKDCADSGWEFYSHGTYNTRYLFNMDEAQERAVIQDSIDTIRKHTGQKLDGWLAPALTYTDNTLDLVADMGLTYVCDLFHDDQPGPVKVKKGRLVSVPYSLEMNDVIVYNVNLVSPRRYGEILKRQFDRLYAEGAESGTVMCIPLHPYL 522
D M RC MRGSVSLNVAMCEHHPE+I CA++GWEFYSHGTYNTRY+ M E QERAVIQDSIDTIRKHTGQKLDGWL+PALTYTD TLDLVA+MGLTYVCDLFHDDQPGPVK KGRL S+PYSLEMND IVYNVN VSPRRYG+I+KRQFDRLY EG ESGTVMCIPLHPYL
Sbjct: 77 DVMKRCNMRGSVSLNVAMCEHHPEVIAACAENGWEFYSHGTYNTRYMMGMSEEQERAVIQDSIDTIRKHTGQKLDGWLSPALTYTDRTLDLVAEMGLTYVCDLFHDDQPGPVKTSKGRLASIPYSLEMNDTIVYNVNQVSPRRYGDIIKRQFDRLYREGEESGTVMCIPLHPYL 250
BLAST of mRNA_P-wetherbeei_contig55121.1.1 vs. uniprot
Match: A0A4P5U0J0_9BURK (Polysaccharide deacetylase n=1 Tax=Comamonadaceae bacterium TaxID=1871071 RepID=A0A4P5U0J0_9BURK) HSP 1 Score: 322 bits (825), Expect = 4.690e-109 Identity = 147/174 (84.48%), Postives = 160/174 (91.95%), Query Frame = 1
Query: 1 DAMDRCGMRGSVSLNVAMCEHHPEIIKDCADSGWEFYSHGTYNTRYLFNMDEAQERAVIQDSIDTIRKHTGQKLDGWLAPALTYTDNTLDLVADMGLTYVCDLFHDDQPGPVKVKKGRLVSVPYSLEMNDVIVYNVNLVSPRRYGEILKRQFDRLYAEGAESGTVMCIPLHPYL 522
+AM RC MRGSVSLNVAMC+HHPE+I+ CAD GWEFYSHGTYNTRYL M EAQERAVIQDSIDT+R++TGQKLDGWLAPALTYT+ TLDLVA+MGLTYVCDLFHDDQPGPVKV++GRL SVPYSLEMND IVYNVNLV PRRY +ILKRQFDRLY EG +SGTVMCIPLHPYL
Sbjct: 77 EAMQRCNMRGSVSLNVAMCQHHPEVIQACADKGWEFYSHGTYNTRYLMGMTEAQERAVIQDSIDTVRQYTGQKLDGWLAPALTYTERTLDLVAEMGLTYVCDLFHDDQPGPVKVRQGRLTSVPYSLEMNDTIVYNVNLVQPRRYADILKRQFDRLYEEGEQSGTVMCIPLHPYL 250
BLAST of mRNA_P-wetherbeei_contig55121.1.1 vs. uniprot
Match: A0A1F3YAD8_9PROT (Polysaccharide deacetylase n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YAD8_9PROT) HSP 1 Score: 321 bits (822), Expect = 1.300e-108 Identity = 145/174 (83.33%), Postives = 160/174 (91.95%), Query Frame = 1
Query: 1 DAMDRCGMRGSVSLNVAMCEHHPEIIKDCADSGWEFYSHGTYNTRYLFNMDEAQERAVIQDSIDTIRKHTGQKLDGWLAPALTYTDNTLDLVADMGLTYVCDLFHDDQPGPVKVKKGRLVSVPYSLEMNDVIVYNVNLVSPRRYGEILKRQFDRLYAEGAESGTVMCIPLHPYL 522
+ MDRCGMRGSVSLNVA+CEHHPE+I C + GWE YSHGTYNTRYLFN+ E QERAVIQDSIDTIR+ +GQKLDGWLAPALTYT+ TLDLVA+MGL+YVCDLFHDDQPGP+KVKKGRL S+PYSLEMNDVI YNVNLV+PR YGEI++RQFDRLYAEG ESGTVMCIPLHPYL
Sbjct: 77 EVMDRCGMRGSVSLNVAVCEHHPEVIAACVERGWELYSHGTYNTRYLFNLSEDQERAVIQDSIDTIRRASGQKLDGWLAPALTYTERTLDLVAEMGLSYVCDLFHDDQPGPIKVKKGRLASIPYSLEMNDVIAYNVNLVAPRHYGEIIRRQFDRLYAEGEESGTVMCIPLHPYL 250
BLAST of mRNA_P-wetherbeei_contig55121.1.1 vs. uniprot
Match: A0A177QUM7_9PROT (Polysaccharide deacetylase (Fragment) n=1 Tax=Betaproteobacteria bacterium SCGC AG-212-J23 TaxID=1799662 RepID=A0A177QUM7_9PROT) HSP 1 Score: 307 bits (787), Expect = 1.700e-103 Identity = 138/174 (79.31%), Postives = 157/174 (90.23%), Query Frame = 1
Query: 1 DAMDRCGMRGSVSLNVAMCEHHPEIIKDCADSGWEFYSHGTYNTRYLFNMDEAQERAVIQDSIDTIRKHTGQKLDGWLAPALTYTDNTLDLVADMGLTYVCDLFHDDQPGPVKVKKGRLVSVPYSLEMNDVIVYNVNLVSPRRYGEILKRQFDRLYAEGAESGTVMCIPLHPYL 522
+AMDRCG+RGSVSLNVA+CEHHPE+I+ C + GWE YSHGTYNTRY F M EAQER +IQDSIDTI++ +GQKLDGWLAPALTYT+ TLDLVA+MGLTYVCDLFHDDQPGPVKVK+GRL S+PYSLEMND I +NV+ V+PR YGEI++RQFDRLY EG ESGTVMCIPLHPYL
Sbjct: 63 EAMDRCGVRGSVSLNVAVCEHHPEVIEACVERGWELYSHGTYNTRYTFGMSEAQERELIQDSIDTIKRVSGQKLDGWLAPALTYTERTLDLVAEMGLTYVCDLFHDDQPGPVKVKQGRLASIPYSLEMNDAIAFNVSSVTPRHYGEIIRRQFDRLYEEGRESGTVMCIPLHPYL 236
BLAST of mRNA_P-wetherbeei_contig55121.1.1 vs. uniprot
Match: UPI00199B544F (Polysaccharide deacetylase family protein n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI00199B544F) HSP 1 Score: 305 bits (781), Expect = 2.220e-102 Identity = 139/174 (79.89%), Postives = 155/174 (89.08%), Query Frame = 1
Query: 1 DAMDRCGMRGSVSLNVAMCEHHPEIIKDCADSGWEFYSHGTYNTRYLFNMDEAQERAVIQDSIDTIRKHTGQKLDGWLAPALTYTDNTLDLVADMGLTYVCDLFHDDQPGPVKVKKGRLVSVPYSLEMNDVIVYNVNLVSPRRYGEILKRQFDRLYAEGAESGTVMCIPLHPYL 522
+AMDRCG+R SVSLN A+CEHHPE++ C + WE YSHGTYNTRY+FNM E QER +IQDSIDTIR+ +GQKLDGWLAPALTYTD TLDLVA+MGL+YVCDLFHDDQPG VKV+KGRL S+PYSLEMND I Y+VN VSPR YGEI+KRQFDRLYAEGAESGTVMCIPLHPYL
Sbjct: 77 EAMDRCGVRCSVSLNAAVCEHHPEVVAACVERDWELYSHGTYNTRYMFNMSETQERVLIQDSIDTIRRVSGQKLDGWLAPALTYTDRTLDLVAEMGLSYVCDLFHDDQPGVVKVRKGRLSSIPYSLEMNDAISYSVNWVSPRHYGEIIKRQFDRLYAEGAESGTVMCIPLHPYL 250 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55121.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig55121.1.1 >prot_P-wetherbeei_contig55121.1.1 ID=prot_P-wetherbeei_contig55121.1.1|Name=mRNA_P-wetherbeei_contig55121.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=172bp MDRCGMRGSVSLNVAMCEHHPEIIKDCADSGWEFYSHGTYNTRYLFNMDEback to top mRNA from alignment at P-wetherbeei_contig55121:2..523- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig55121.1.1 ID=mRNA_P-wetherbeei_contig55121.1.1|Name=mRNA_P-wetherbeei_contig55121.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=522bp|location=Sequence derived from alignment at P-wetherbeei_contig55121:2..523- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig55121:2..523- >mRNA_P-wetherbeei_contig55121.1.1 ID=mRNA_P-wetherbeei_contig55121.1.1|Name=mRNA_P-wetherbeei_contig55121.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig55121:2..523- (Phaeothamnion wetherbeei SAG_119_79)back to top |