mRNA_P-wetherbeei_contig55104.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55104.1.1
Unique NamemRNA_P-wetherbeei_contig55104.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55104.1.1 vs. uniprot
Match: UPI001C3CD0A7 (diguanylate cyclase n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3CD0A7)

HSP 1 Score: 294 bits (752), Expect = 2.130e-92
Identity = 147/175 (84.00%), Postives = 156/175 (89.14%), Query Frame = 1
Query:    1 EVALHWAKVSGRNRAVLYSFHVAEEVFSRRGADRAEAPSLRAMRALAWAVDAKDPHTHRHSTRVADLAVQLATALGWTVPRAAQLREAGLVHDVGKIAVPDAILFKPGPLSEAEYAQMASHAAVGAQIVADVLSPEQAAWVRAHHERWDGAGYPDRLVGEDIPEEARLLTLADCW 525
            EVALHWAKVSGRNRAV YSF VAEEVF+RRG DRAE PSLRAMRALAWAVDAKDP+THRHSTRVADLAV LATALGWTV RAAQLREAGLVHDVGKIAVPDAILFKPGPL+  E  +++ HA +GA+IV DVLSPEQAAWVR HHERWDG GYPD L G+DIPEEARLL LAD W
Sbjct:  532 EVALHWAKVSGRNRAVAYSFAVAEEVFARRGGDRAETPSLRAMRALAWAVDAKDPYTHRHSTRVADLAVALATALGWTVARAAQLREAGLVHDVGKIAVPDAILFKPGPLTPHEREEVSRHAEIGARIVEDVLSPEQAAWVRGHHERWDGGGYPDGLAGDDIPEEARLLALADSW 706          
BLAST of mRNA_P-wetherbeei_contig55104.1.1 vs. uniprot
Match: UPI001C3C3E4F (diguanylate cyclase n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3C3E4F)

HSP 1 Score: 206 bits (525), Expect = 9.290e-59
Identity = 109/176 (61.93%), Postives = 127/176 (72.16%), Query Frame = 1
Query:    1 EVALHWAKVSGRNRAVLYSFHVAEEVFSRRGADR-AEAPSLRAMRALAWAVDAKDPHTHRHSTRVADLAVQLATALGWTVPRAAQLREAGLVHDVGKIAVPDAILFKPGPLSEAEYAQMASHAAVGAQIVADVLSPEQAAWVRAHHERWDGAGYPDRLVGEDIPEEARLLTLADCW 525
            E AL+WAK  GR+ A LYS  V EE+ +   A+R     +L+++R LA AVDAKD  T  HS RVADLAV L TA+GW   R  +LREAGLVHDVGKI VPD ILFKP  LS AEY ++  HA +GA++VADVL+PEQ AWVR HHERWDG GYPD L GE IPE AR+L LAD W
Sbjct:  729 EGALYWAKQHGRDVAFLYSPEVVEELSAEERAERLTRMQALQSIRVLARAVDAKDTSTREHSERVADLAVSLGTAMGWDSERLVRLREAGLVHDVGKIGVPDRILFKPARLSPAEYEEIMRHAEIGAEMVADVLTPEQVAWVRGHHERWDGRGYPDGLAGEAIPEGARILALADSW 904          
BLAST of mRNA_P-wetherbeei_contig55104.1.1 vs. uniprot
Match: UPI001C3C7CE6 (diguanylate cyclase n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3C7CE6)

HSP 1 Score: 199 bits (507), Expect = 3.660e-57
Identity = 102/174 (58.62%), Postives = 124/174 (71.26%), Query Frame = 1
Query:    7 ALHWAKVSGRNRAVLYSFHVAEEVFSRRGADRAEAP-SLRAMRALAWAVDAKDPHTHRHSTRVADLAVQLATALGWTVPRAAQLREAGLVHDVGKIAVPDAILFKPGPLSEAEYAQMASHAAVGAQIVADVLSPEQAAWVRAHHERWDGAGYPDRLVGEDIPEEARLLTLADCW 525
            AL+WAK  GR+ AV+Y   V  E+ +   A+R E   ++  +RALA AVDAKDP T RHS RVADLA QLA  LGW  P  A+LREAGL+HDVGKI VPDA+LFKPGPL+ +EY Q+  H+ +GA I A+VL  EQ AW+R HHERW+G GYPD L G   PE A++L LAD W
Sbjct:  311 ALYWAKAHGRDTAVMYCAEVVTELSAAERAERLEVVRAMAGLRALARAVDAKDPSTRRHSERVADLAGQLAGELGWPRPATARLREAGLLHDVGKIGVPDAVLFKPGPLTPSEYEQVKQHSPLGANIAAEVLDGEQVAWIRHHHERWNGGGYPDGLCGPQAPEGAQILALADAW 484          
BLAST of mRNA_P-wetherbeei_contig55104.1.1 vs. uniprot
Match: UPI001C3CF174 (diguanylate cyclase n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3CF174)

HSP 1 Score: 200 bits (509), Expect = 1.230e-56
Identity = 107/174 (61.49%), Postives = 130/174 (74.71%), Query Frame = 1
Query:    7 ALHWAKVSGRNRAVLYSFHVAEEVFSRRGADR-AEAPSLRAMRALAWAVDAKDPHTHRHSTRVADLAVQLATALGWTVPRAAQLREAGLVHDVGKIAVPDAILFKPGPLSEAEYAQMASHAAVGAQIVADVLSPEQAAWVRAHHERWDGAGYPDRLVGEDIPEEARLLTLADCW 525
            AL+WAK  GR+ A LYS  V E +     A+R     +L+++R LA AVDAKDP T +HS RV+++A  LATALGW+   A+ LR+AGLVHDVGKIAVPDAILFKP  L+E E+ ++ +HAA+GA+IVADVLS  Q AWVR HHERWDGAGYPD L GE IP  AR+LTLAD W
Sbjct:  691 ALYWAKQHGRDVAFLYSPEVVEVLSDAEHAERLTRXQALQSIRVLARAVDAKDPSTRQHSERVSEVAKVLATALGWSPDDASALRDAGLVHDVGKIAVPDAILFKPDRLTEEEFQRVRAHAALGAEIVADVLSNAQVAWVRGHHERWDGAGYPDGLAGEGIPVGARILTLADAW 864          
BLAST of mRNA_P-wetherbeei_contig55104.1.1 vs. uniprot
Match: UPI001C3C95BC (diguanylate cyclase n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3C95BC)

HSP 1 Score: 199 bits (507), Expect = 4.630e-56
Identity = 107/174 (61.49%), Postives = 127/174 (72.99%), Query Frame = 1
Query:    7 ALHWAKVSGRNRAVLYSFHVAEEVFSRRGADRAE-APSLRAMRALAWAVDAKDPHTHRHSTRVADLAVQLATALGWTVPRAAQLREAGLVHDVGKIAVPDAILFKPGPLSEAEYAQMASHAAVGAQIVADVLSPEQAAWVRAHHERWDGAGYPDRLVGEDIPEEARLLTLADCW 525
            AL+WAK  GR+ +  YS  V EE+ ++  ADR E + +L A+R LA AVDAKDP T RHS RV++LA Q+A  LGW   R A LR AGLVHDVGKI VPD+ILFKPG L+  EY Q+  HA +GAQIVADVLS EQ  WVR HHER DGAGYPD L G+DIPE +R+L +AD W
Sbjct:  978 ALYWAKGHGRDISFRYSPEVVEELSAQERADRLERSQALNAIRVLARAVDAKDPSTRRHSERVSELADQIAGELGWPAERRALLRGAGLVHDVGKIGVPDSILFKPGRLTSGEYEQVKQHARLGAQIVADVLSAEQVVWVRHHHERIDGAGYPDGLAGDDIPEGSRVLAVADAW 1151          
BLAST of mRNA_P-wetherbeei_contig55104.1.1 vs. uniprot
Match: UPI001FE87334 (diguanylate cyclase n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001FE87334)

HSP 1 Score: 190 bits (482), Expect = 6.170e-56
Identity = 102/172 (59.30%), Postives = 119/172 (69.19%), Query Frame = 1
Query:    7 ALHWAKVSGRNRAVLYSFHVAEEVFSRRGADRAE-APSLRAMRALAWAVDAKDPHTHRHSTRVADLAVQLATALGWTVPRAAQLREAGLVHDVGKIAVPDAILFKPGPLSEAEYAQMASHAAVGAQIVADVLSPEQAAWVRAHHERWDGAGYPDRLVGEDIPEEARLLTLAD 519
            AL+WAK  GR+ +  YS  V E + +   A R E + +L A+RALA AVDAKDPHT RHS RVA LA  +A  +GW   R A L EAGLVHDVGKI VPDA+L KP  L+ AEY Q+  HAA+GA I  ++LS EQ AWVR HHERWDG GYPD L G  IPE AR+L LAD
Sbjct:  167 ALYWAKAHGRDASCRYSPAVVEVLSAEERARRLERSQALAALRALARAVDAKDPHTQRHSERVAALAAGIAEVIGWPPERTALLHEAGLVHDVGKIGVPDAVLAKPAALTAAEYEQVKQHAALGADIAGEILSAEQTAWVRGHHERWDGRGYPDALAGAAIPEGARILALAD 338          
BLAST of mRNA_P-wetherbeei_contig55104.1.1 vs. uniprot
Match: UPI001C3C2F66 (diguanylate cyclase n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3C2F66)

HSP 1 Score: 193 bits (490), Expect = 8.380e-56
Identity = 101/174 (58.05%), Postives = 126/174 (72.41%), Query Frame = 1
Query:    7 ALHWAKVSGRNRAVLYSFHVAEEVFSRRGADRAE-APSLRAMRALAWAVDAKDPHTHRHSTRVADLAVQLATALGWTVPRAAQLREAGLVHDVGKIAVPDAILFKPGPLSEAEYAQMASHAAVGAQIVADVLSPEQAAWVRAHHERWDGAGYPDRLVGEDIPEEARLLTLADCW 525
            AL+WAK  GR+R + YS  V EE+ +   A R E   +L A+ ALA AVDAKDP+T RHS RVAD+AV+LA  LGW   R  +LREA ++HDVGKIAVPDAIL KPG L+  E+A +  H A GA+IVA+ L+PEQA+WVR HHER DG GYPD + G+ IP+ AR++ LAD W
Sbjct:  268 ALYWAKAHGRDRCIRYSPEVVEELSAGERAARLEHQQALNAVHALARAVDAKDPYTQRHSERVADIAVRLALELGWPAERLRELREAAVLHDVGKIAVPDAILTKPGALTPDEFALVREHPARGAEIVAEALTPEQASWVRGHHERVDGGGYPDGIAGDAIPDGARVMALADAW 441          
BLAST of mRNA_P-wetherbeei_contig55104.1.1 vs. uniprot
Match: UPI001C3C25A1 (diguanylate cyclase n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3C25A1)

HSP 1 Score: 195 bits (495), Expect = 1.070e-54
Identity = 104/174 (59.77%), Postives = 127/174 (72.99%), Query Frame = 1
Query:    7 ALHWAKVSGRNRAVLYSFHVAEEVFSRRGADR-AEAPSLRAMRALAWAVDAKDPHTHRHSTRVADLAVQLATALGWTVPRAAQLREAGLVHDVGKIAVPDAILFKPGPLSEAEYAQMASHAAVGAQIVADVLSPEQAAWVRAHHERWDGAGYPDRLVGEDIPEEARLLTLADCW 525
            AL+WAK  GR+ A LYS  V E +     A+R     +L+++R LA AVDAKD  T +HS RV+++A  LA ALGW    A+ LR+AGLVHDVGKIAVPDAILFKP  L+  E+ ++ +HAA+GAQ+VADVLS +Q AWVR HHERWDG GYPD L GE IPE AR+LTLAD W
Sbjct:  686 ALYWAKQHGRDVAFLYSPEVVEVLSDAEHAERLTRLQALQSIRVLARAVDAKDTSTRQHSERVSEVAGALAIALGWDAEAASALRDAGLVHDVGKIAVPDAILFKPDRLTPEEFRRVTAHAALGAQMVADVLSADQVAWVRGHHERWDGRGYPDGLAGEAIPEGARILTLADSW 859          
BLAST of mRNA_P-wetherbeei_contig55104.1.1 vs. uniprot
Match: UPI001C3E6391 (diguanylate cyclase n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3E6391)

HSP 1 Score: 189 bits (481), Expect = 1.300e-53
Identity = 100/176 (56.82%), Postives = 125/176 (71.02%), Query Frame = 1
Query:    1 EVALHWAKVSGRNRAVLYSFHVAEEVFSR-RGADRAEAPSLRAMRALAWAVDAKDPHTHRHSTRVADLAVQLATALGWTVPRAAQLREAGLVHDVGKIAVPDAILFKPGPLSEAEYAQMASHAAVGAQIVADVLSPEQAAWVRAHHERWDGAGYPDRLVGEDIPEEARLLTLADCW 525
            + AL+WAK +GR+   LY+    + +    R A+     +  ++R LA AVDAKDP T RHS RVA LA  LA  LGW   R A LREA LVHDVGKIAVPD +LFKPG L+ AE A+++ HAA+GA++++DVLSPEQ AWVR+HHERWDGAGYP+ L GE +PE ARL+ LA  W
Sbjct:  439 DTALYWAKRNGRDVVFLYTPEAMQAMGEEERAAELRRGQAFGSIRVLARAVDAKDPSTRRHSERVAGLAGLLAERLGWPAGRVALLREAALVHDVGKIAVPDTVLFKPGRLTAAERAKVSQHAALGAEMLSDVLSPEQTAWVRSHHERWDGAGYPEGLRGEAVPEGARLIHLASAW 614          
BLAST of mRNA_P-wetherbeei_contig55104.1.1 vs. uniprot
Match: UPI001C3CD9C4 (diguanylate cyclase n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3CD9C4)

HSP 1 Score: 192 bits (487), Expect = 1.890e-53
Identity = 104/176 (59.09%), Postives = 120/176 (68.18%), Query Frame = 1
Query:    1 EVALHWAKVSGRNRAVLYSFHVAEEVFSRRGADRAEAPSLRA-MRALAWAVDAKDPHTHRHSTRVADLAVQLATALGWTVPRAAQLREAGLVHDVGKIAVPDAILFKPGPLSEAEYAQMASHAAVGAQIVADVLSPEQAAWVRAHHERWDGAGYPDRLVGEDIPEEARLLTLADCW 525
            E AL+WAK  GR+ A LYS  V EE+ +   A+          +R LA AVDAKD  T  HS RVADLAV LA  LGW   R  +LREAGLVHDVGKI VPD ILFKP  L+  EYA +  HA +GA++VADVL+ EQ AWVR HHERWDG GYPD L GEDIP+ A++L LAD W
Sbjct:  762 EGALYWAKQHGRDVAFLYSPEVVEELSAEERAEXXXXXXXXXXIRVLARAVDAKDTSTREHSERVADLAVALAAELGWDGERLVRLREAGLVHDVGKIGVPDRILFKPDRLTPEEYADIKRHAEIGAEMVADVLTEEQVAWVRGHHERWDGRGYPDGLAGEDIPDGAQVLALADAW 937          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55104.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3CD0A72.130e-9284.00diguanylate cyclase n=1 Tax=Miltoncostaea oceani T... [more]
UPI001C3C3E4F9.290e-5961.93diguanylate cyclase n=1 Tax=Miltoncostaea oceani T... [more]
UPI001C3C7CE63.660e-5758.62diguanylate cyclase n=1 Tax=Miltoncostaea oceani T... [more]
UPI001C3CF1741.230e-5661.49diguanylate cyclase n=1 Tax=Miltoncostaea oceani T... [more]
UPI001C3C95BC4.630e-5661.49diguanylate cyclase n=1 Tax=Miltoncostaea oceani T... [more]
UPI001FE873346.170e-5659.30diguanylate cyclase n=1 Tax=Miltoncostaea marina T... [more]
UPI001C3C2F668.380e-5658.05diguanylate cyclase n=1 Tax=Miltoncostaea oceani T... [more]
UPI001C3C25A11.070e-5459.77diguanylate cyclase n=1 Tax=Miltoncostaea marina T... [more]
UPI001C3E63911.300e-5356.82diguanylate cyclase n=1 Tax=Miltoncostaea marina T... [more]
UPI001C3CD9C41.890e-5359.09diguanylate cyclase n=1 Tax=Miltoncostaea marina T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55104contigP-wetherbeei_contig55104:1..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1283299.AUKG01000001_gene2449
PFAMsGGDEF,HD,MASE1
Model size525
Max annot lvl84995|Rubrobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.03e-49
EggNOG OGsCOG3437@1|root,COG3437@2|Bacteria,2I49F@201174|Actinobacteria,4CRG8@84995|Rubrobacteria
DescriptionHD domain
Cds size525
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186821.9748552-CDS-P-wetherbeei_contig55104:0..5251683186821.9748552-CDS-P-wetherbeei_contig55104:0..525Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55104 1..525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55104.1.1prot_P-wetherbeei_contig55104.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55104 1..525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55104.1.1

>prot_P-wetherbeei_contig55104.1.1 ID=prot_P-wetherbeei_contig55104.1.1|Name=mRNA_P-wetherbeei_contig55104.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=175bp
EVALHWAKVSGRNRAVLYSFHVAEEVFSRRGADRAEAPSLRAMRALAWAV
DAKDPHTHRHSTRVADLAVQLATALGWTVPRAAQLREAGLVHDVGKIAVP
DAILFKPGPLSEAEYAQMASHAAVGAQIVADVLSPEQAAWVRAHHERWDG
AGYPDRLVGEDIPEEARLLTLADCW
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mRNA from alignment at P-wetherbeei_contig55104:1..525-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55104.1.1 ID=mRNA_P-wetherbeei_contig55104.1.1|Name=mRNA_P-wetherbeei_contig55104.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig55104:1..525- (Phaeothamnion wetherbeei SAG_119_79)
GAGGTGGCCCTCCACTGGGCCAAGGTGTCGGGGCGCAACCGGGCGGTGCT CTACTCGTTCCATGTGGCCGAGGAGGTCTTCTCGCGCCGCGGCGCCGATC GTGCCGAGGCTCCCAGCCTGCGCGCCATGCGCGCCCTGGCATGGGCGGTG GACGCGAAGGACCCTCACACCCATCGCCACTCGACGCGCGTCGCCGACCT GGCCGTGCAGCTGGCCACTGCCCTGGGCTGGACCGTGCCCCGAGCGGCCC AGCTGCGCGAGGCCGGGCTGGTGCACGATGTGGGCAAGATCGCGGTGCCC GACGCGATTCTCTTCAAGCCGGGCCCACTCTCGGAGGCCGAGTACGCCCA GATGGCGTCCCACGCCGCGGTGGGTGCGCAGATCGTGGCCGACGTGCTCT CGCCCGAGCAGGCCGCCTGGGTGCGGGCGCACCACGAACGCTGGGACGGC GCCGGATATCCGGATCGTCTCGTGGGCGAGGACATCCCGGAGGAGGCCCG CCTGTTGACCCTCGCCGACTGTTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55104:1..525-

>mRNA_P-wetherbeei_contig55104.1.1 ID=mRNA_P-wetherbeei_contig55104.1.1|Name=mRNA_P-wetherbeei_contig55104.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=525bp|location=Sequence derived from alignment at P-wetherbeei_contig55104:1..525- (Phaeothamnion wetherbeei SAG_119_79)
GAGGTGGCCCTCCACTGGGCCAAGGTGTCGGGGCGCAACCGGGCGGTGCT
CTACTCGTTCCATGTGGCCGAGGAGGTCTTCTCGCGCCGCGGCGCCGATC
GTGCCGAGGCTCCCAGCCTGCGCGCCATGCGCGCCCTGGCATGGGCGGTG
GACGCGAAGGACCCTCACACCCATCGCCACTCGACGCGCGTCGCCGACCT
GGCCGTGCAGCTGGCCACTGCCCTGGGCTGGACCGTGCCCCGAGCGGCCC
AGCTGCGCGAGGCCGGGCTGGTGCACGATGTGGGCAAGATCGCGGTGCCC
GACGCGATTCTCTTCAAGCCGGGCCCACTCTCGGAGGCCGAGTACGCCCA
GATGGCGTCCCACGCCGCGGTGGGTGCGCAGATCGTGGCCGACGTGCTCT
CGCCCGAGCAGGCCGCCTGGGTGCGGGCGCACCACGAACGCTGGGACGGC
GCCGGATATCCGGATCGTCTCGTGGGCGAGGACATCCCGGAGGAGGCCCG
CCTGTTGACCCTCGCCGACTGTTGG
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