mRNA_P-wetherbeei_contig5510.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5510.3.1
Unique NamemRNA_P-wetherbeei_contig5510.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5510.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5510contigP-wetherbeei_contig5510:1683..2578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size896
Hectar predicted targeting categorymitochondrion
Exons1
Cds size477
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186821.8679278-UTR-P-wetherbeei_contig5510:1682..20681683186821.8679278-UTR-P-wetherbeei_contig5510:1682..2068Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5510 1683..2068 +
1683186821.8903334-UTR-P-wetherbeei_contig5510:2545..25781683186821.8903334-UTR-P-wetherbeei_contig5510:2545..2578Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5510 2546..2578 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186821.8799021-CDS-P-wetherbeei_contig5510:2068..25451683186821.8799021-CDS-P-wetherbeei_contig5510:2068..2545Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5510 2069..2545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5510.3.1prot_P-wetherbeei_contig5510.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5510 2069..2545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5510.3.1

>prot_P-wetherbeei_contig5510.3.1 ID=prot_P-wetherbeei_contig5510.3.1|Name=mRNA_P-wetherbeei_contig5510.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
MHRYLFRRSFFPAAASSQDGPRLRNPFPVGRSQASQSALGMIPVRGRGLR
EQSSIASLVAAPPVCLLSNSVRFRMAVLFGGESEAAWYRLRLAVHTSSAP
AVEGVGAAAATAALGFAKGRRRVGDWKAGNGPFIGSRTVVEFLFHAFTSK
FNHPAFVP*
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mRNA from alignment at P-wetherbeei_contig5510:1683..2578+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5510.3.1 ID=mRNA_P-wetherbeei_contig5510.3.1|Name=mRNA_P-wetherbeei_contig5510.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=896bp|location=Sequence derived from alignment at P-wetherbeei_contig5510:1683..2578+ (Phaeothamnion wetherbeei SAG_119_79)
GCTTGTGGGCTGGCGTCTTCTGCCAGAAGAGGTTTGGAGCGTGAGCCACC
GCCAGTGGTCTCGTTCCGATGCTGCCTTCCACTCTGGGTAGGATGGTGTG
CTGAGCACACCTGAAAACAACTTTTTCAGTTCGCGTGCCTGCAGTGTCTC
CGATCCTCCGGACGAATGTTTACGCCCCGTGTGCTTCGGCAGCGCGTCTC
TTTCGGAGAGAGGAGCGGCGGAATGAGATTAAGAGTGGCGGGAAGCTGGT
TGGTTTTAGAAGCTGGTTGGTTAGATATCACACGATCTTCTCTACCGTTC
CTTTTTTTCCTTGTTCTGTTGGACTCCTCTAGGTACTGCTCTTGTTGCTG
GCCTTCTATCTTCCGGCGTCCTTCCACGACTTCGAGATGCATCGTTATCT
TTTTCGCCGATCGTTTTTCCCGGCTGCCGCTTCTTCCCAGGACGGACCCA
GGCTTCGCAATCCATTTCCGGTTGGTAGAAGCCAGGCTTCTCAATCCGCG
CTGGGCATGATTCCGGTAAGGGGACGTGGTTTGAGGGAGCAGAGTAGCAT
TGCATCTTTGGTGGCTGCCCCGCCCGTGTGCTTGTTATCAAACAGCGTCA
GGTTCAGGATGGCCGTTCTCTTCGGCGGTGAATCAGAAGCCGCGTGGTAC
CGCCTGCGCTTGGCCGTCCACACTTCCTCGGCACCAGCGGTTGAGGGCGT
TGGTGCGGCGGCCGCGACAGCCGCCTTGGGCTTCGCGAAAGGCAGACGGC
GCGTCGGCGATTGGAAAGCGGGAAATGGGCCATTCATAGGATCGAGGACG
GTGGTGGAATTTTTGTTCCATGCGTTTACTTCCAAATTTAATCATCCCGC
ATTTGTACCTTGAAAGAAGCCGGCTTGCCCCCGTCTGTAACTCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5510:1683..2578+

>mRNA_P-wetherbeei_contig5510.3.1 ID=mRNA_P-wetherbeei_contig5510.3.1|Name=mRNA_P-wetherbeei_contig5510.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig5510:1683..2578+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCATCGTTATCTTTTTCGCCGATCGTTTTTCCCGGCTGCCGCTTCTTC
CCAGGACGGACCCAGGCTTCGCAATCCATTTCCGGTTGGTAGAAGCCAGG
CTTCTCAATCCGCGCTGGGCATGATTCCGGTAAGGGGACGTGGTTTGAGG
GAGCAGAGTAGCATTGCATCTTTGGTGGCTGCCCCGCCCGTGTGCTTGTT
ATCAAACAGCGTCAGGTTCAGGATGGCCGTTCTCTTCGGCGGTGAATCAG
AAGCCGCGTGGTACCGCCTGCGCTTGGCCGTCCACACTTCCTCGGCACCA
GCGGTTGAGGGCGTTGGTGCGGCGGCCGCGACAGCCGCCTTGGGCTTCGC
GAAAGGCAGACGGCGCGTCGGCGATTGGAAAGCGGGAAATGGGCCATTCA
TAGGATCGAGGACGGTGGTGGAATTTTTGTTCCATGCGTTTACTTCCAAA
TTTAATCATCCCGCATTTGTACCTTGA
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