mRNA_P-wetherbeei_contig55087.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig55087.1.1
Unique NamemRNA_P-wetherbeei_contig55087.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: UPI001CE32360 (hypothetical protein n=1 Tax=Bradyrhizobium sp. WSM 1738 TaxID=2821405 RepID=UPI001CE32360)

HSP 1 Score: 56.6 bits (135), Expect = 4.540e-9
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1
Query:   25 REMAKSYSGVIVREGGRSSIPETLMIEPRGRGVLDHPPSRVTTVE 159
            RE A ++S VIVREGGR SIPE +MI+P  RGVLD P +R  TVE
Sbjct:   14 RENADAHSPVIVREGGRFSIPEAIMIKPMSRGVLDPPHARGMTVE 58          
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: UPI001AEC852B (hypothetical protein n=1 Tax=Bradyrhizobium sp. AT1 TaxID=574934 RepID=UPI001AEC852B)

HSP 1 Score: 55.8 bits (133), Expect = 4.950e-9
Identity = 32/53 (60.38%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    7 NSGAMCREMAK----SYSGVIVREGGRSSIPETLMIEPRGRGVLDHPPSRVTT 153
            NSG   RE AK        VI REGGRSSIPET++IEP  RGVLD PP+R  T
Sbjct:    6 NSGESSREKAKVRVHHTLTVIAREGGRSSIPETIVIEPISRGVLDSPPARGMT 58          
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: A0A2S6MKY7_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. AC87j1 TaxID=2055894 RepID=A0A2S6MKY7_9BRAD)

HSP 1 Score: 57.4 bits (137), Expect = 1.380e-8
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = -1
Query:   49 CH-PRRRVIQYAAASRLYHQRLWDTGSSAFADDDT 150
            CH PRRR IQYAAASR  H  LW+TGSSAFADDDT
Sbjct:   12 CHAPRRRGIQYAAASRFNHYALWNTGSSAFADDDT 46          
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: A0A1I3J1W1_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. cf659 TaxID=1761771 RepID=A0A1I3J1W1_9BRAD)

HSP 1 Score: 55.1 bits (131), Expect = 1.750e-7
Identity = 30/50 (60.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:   10 SGAMCREMAKSYS-GVIVREGGRSSIPETLMIEPRGRGVLDHPPSRVTTV 156
            S A  R     Y+  VI REGGRSSIPE +++EPRG GVLD PPSR  TV
Sbjct:  176 SAARLRRRVCDYTLAVIAREGGRSSIPEAVVMEPRGCGVLDSPPSRGMTV 225          
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: A0A2M8QYD1_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium forestalis TaxID=1419263 RepID=A0A2M8QYD1_9BRAD)

HSP 1 Score: 51.6 bits (122), Expect = 2.680e-7
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = -1
Query:   49 LNCCHPRRRVIQYAAASRLYHQRLWDTGSSAFADDDT 159
            L C  PR+R +QYAAASRL H  LW+TGS AFA DD+
Sbjct:    9 LRCHSPRKRGMQYAAASRLNHNCLWNTGSPAFAGDDS 45          
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: A0A7S7QU09_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. CCBAU 51753 TaxID=1325100 RepID=A0A7S7QU09_9BRAD)

HSP 1 Score: 51.6 bits (122), Expect = 4.980e-7
Identity = 26/38 (68.42%), Postives = 26/38 (68.42%), Query Frame = -2
Query:   21 G*SSTPRPLGSIINVSGILDRPPSRTMTPEYDFAISRH 134
            G SSTPRPLGSI  VSGILD PPSR MTP     I  H
Sbjct:   31 GRSSTPRPLGSITAVSGILDHPPSRVMTPRLLIVIEDH 68          
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: J2W714_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 TaxID=1144344 RepID=J2W714_9BRAD)

HSP 1 Score: 49.7 bits (117), Expect = 1.500e-6
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = -1
Query:    4 PRRRVIQYAAASRLYHQRLWDTGSSAFADDDT*I*LCHLAAHCARVV 144
            P +  IQYAAA RL H RLW+TGS AFA DD  +  C++ ++  R +
Sbjct:    5 PAKAGIQYAAAFRLNHSRLWNTGSPAFAGDDQRVWDCYILSNACRSI 51          
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: A0A7S7TLI9_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium sp. CCBAU 51753 TaxID=1325100 RepID=A0A7S7TLI9_9BRAD)

HSP 1 Score: 48.9 bits (115), Expect = 1.970e-6
Identity = 22/29 (75.86%), Postives = 24/29 (82.76%), Query Frame = -2
Query:   48 G*SSTPRPLGSIINVSGILDRPPSRTMTP 134
            G SSTPRPLGS+  VSGILD PP+R MTP
Sbjct:   27 GRSSTPRPLGSVTTVSGILDHPPARVMTP 55          
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: UPI001E549531 (hypothetical protein n=1 Tax=Bradyrhizobium ivorense TaxID=2511166 RepID=UPI001E549531)

HSP 1 Score: 50.4 bits (119), Expect = 2.310e-6
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = -1
Query:   49 RVIQYAAASRLYHQRLWDTGSSAFADDDT 135
            R IQYAAASR Y++RLW+TGS AFA DDT
Sbjct:   28 RAIQYAAASRFYYRRLWNTGSPAFAGDDT 56          
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Match: A0A1M5J585_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5J585_9BRAD)

HSP 1 Score: 51.2 bits (121), Expect = 2.600e-6
Identity = 27/37 (72.97%), Postives = 28/37 (75.68%), Query Frame = -2
Query:   45 TVVTREGG*SSTPRPLGSIINVSGILDRPPSRTMTPE 155
            TV+ R  G SSTPR LGSI NVSGILDRPPSR  T E
Sbjct:   16 TVIPRACGVSSTPRRLGSIKNVSGILDRPPSRATTIE 52          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig55087.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
UPI001CE323604.540e-964.44hypothetical protein n=1 Tax=Bradyrhizobium sp. WS... [more]
UPI001AEC852B4.950e-960.38hypothetical protein n=1 Tax=Bradyrhizobium sp. AT... [more]
A0A2S6MKY7_9BRAD1.380e-880.00Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
A0A1I3J1W1_9BRAD1.750e-760.00Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
A0A2M8QYD1_9BRAD2.680e-764.86Uncharacterized protein n=1 Tax=Bradyrhizobium for... [more]
A0A7S7QU09_9BRAD4.980e-768.42Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
J2W714_9BRAD1.500e-648.94Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
A0A7S7TLI9_9BRAD1.970e-675.86Uncharacterized protein n=1 Tax=Bradyrhizobium sp.... [more]
UPI001E5495312.310e-675.86hypothetical protein n=1 Tax=Bradyrhizobium ivoren... [more]
A0A1M5J585_9BRAD2.600e-672.97Uncharacterized protein n=1 Tax=Bradyrhizobium ery... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig55087contigP-wetherbeei_contig55087:16..177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186821.6545382-CDS-P-wetherbeei_contig55087:15..1771683186821.6545382-CDS-P-wetherbeei_contig55087:15..177Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig55087 16..177 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig55087.1.1prot_P-wetherbeei_contig55087.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig55087 16..177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig55087.1.1

>prot_P-wetherbeei_contig55087.1.1 ID=prot_P-wetherbeei_contig55087.1.1|Name=mRNA_P-wetherbeei_contig55087.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=54bp
MDNSGAMCREMAKSYSGVIVREGGRSSIPETLMIEPRGRGVLDHPPSRVT
TVEC
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mRNA from alignment at P-wetherbeei_contig55087:16..177-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig55087.1.1 ID=mRNA_P-wetherbeei_contig55087.1.1|Name=mRNA_P-wetherbeei_contig55087.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=162bp|location=Sequence derived from alignment at P-wetherbeei_contig55087:16..177- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACAACTCGGGCGCAATGTGCCGCGAGATGGCAAAGTCATATTCAGG TGTCATCGTCCGCGAAGGCGGACGATCCAGTATCCCAGAGACGTTGATGA TAGAGCCGAGAGGCCGCGGCGTACTGGATCACCCGCCTTCGCGGGTGACA ACAGTTGAGTGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig55087:16..177-

>mRNA_P-wetherbeei_contig55087.1.1 ID=mRNA_P-wetherbeei_contig55087.1.1|Name=mRNA_P-wetherbeei_contig55087.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=162bp|location=Sequence derived from alignment at P-wetherbeei_contig55087:16..177- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACAACTCGGGCGCAATGTGCCGCGAGATGGCAAAGTCATATTCAGG
TGTCATCGTCCGCGAAGGCGGACGATCCAGTATCCCAGAGACGTTGATGA
TAGAGCCGAGAGGCCGCGGCGTACTGGATCACCCGCCTTCGCGGGTGACA
ACAGTTGAGTGC
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