mRNA_P-wetherbeei_contig5501.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5501.1.1
Unique NamemRNA_P-wetherbeei_contig5501.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5501.1.1 vs. uniprot
Match: A0A7S3XP16_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XP16_HETAK)

HSP 1 Score: 51.2 bits (121), Expect = 6.730e-6
Identity = 28/67 (41.79%), Postives = 35/67 (52.24%), Query Frame = 1 
Query:    1 WPAHTSVVASIVWLDL----QGKACFLV-TAGTDGDVHVFTDTGAHVGTFGQRCPWSLAQRSSWQRP 186
            W AH   V S  + D      GK   LV TAG+DGDV ++T  G H+G FG    W L   +SW+ P
Sbjct:  533 WQAHQGSVVSAQFCDHVDEGTGKGGRLVLTAGSDGDVSLWTPAGHHIGIFGGATQWKLDSLASWKSP 599
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5501.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XP16_HETAK6.730e-641.79Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5501contigP-wetherbeei_contig5501:281..466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FNP1
Preferred nameWDR64
PFAMsWD40
Model size186
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.75e-14
EggNOG OGsKOG0274@1|root,KOG0274@2759|Eukaryota
DescriptionSCF-dependent proteasomal ubiquitin-dependent protein catabolic process
Cds size186
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186820.8329108-CDS-P-wetherbeei_contig5501:280..4661683186820.8329108-CDS-P-wetherbeei_contig5501:280..466Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5501 281..466 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5501.1.1prot_P-wetherbeei_contig5501.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5501 281..466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5501.1.1

>prot_P-wetherbeei_contig5501.1.1 ID=prot_P-wetherbeei_contig5501.1.1|Name=mRNA_P-wetherbeei_contig5501.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=62bp
WPAHTSVVASIVWLDLQGKACFLVTAGTDGDVHVFTDTGAHVGTFGQRCP
WSLAQRSSWQRP
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mRNA from alignment at P-wetherbeei_contig5501:281..466+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5501.1.1 ID=mRNA_P-wetherbeei_contig5501.1.1|Name=mRNA_P-wetherbeei_contig5501.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig5501:281..466+ (Phaeothamnion wetherbeei SAG_119_79)
TGGCCGGCGCACACCTCTGTCGTCGCAAGCATCGTCTGGCTCGACCTGCA
GGGCAAGGCGTGCTTCCTCGTCACTGCCGGCACCGACGGCGACGTCCACG
TCTTTACTGACACCGGCGCGCACGTCGGCACCTTCGGGCAGCGCTGTCCG
TGGTCACTGGCGCAGCGGTCGTCCTGGCAGCGGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5501:281..466+

>mRNA_P-wetherbeei_contig5501.1.1 ID=mRNA_P-wetherbeei_contig5501.1.1|Name=mRNA_P-wetherbeei_contig5501.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig5501:281..466+ (Phaeothamnion wetherbeei SAG_119_79)
TGGCCGGCGCACACCTCTGTCGTCGCAAGCATCGTCTGGCTCGACCTGCA
GGGCAAGGCGTGCTTCCTCGTCACTGCCGGCACCGACGGCGACGTCCACG
TCTTTACTGACACCGGCGCGCACGTCGGCACCTTCGGGCAGCGCTGTCCG
TGGTCACTGGCGCAGCGGTCGTCCTGGCAGCGGCCC
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